Wall clock time and date at job start Mon Mar 30 2020 02:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.46629 * 2 1 4 4 C 1.53045 * 109.45799 * 240.08965 * 2 1 3 5 5 C 1.53118 * 109.27302 * 180.86969 * 4 2 1 6 6 H 1.09006 * 109.52626 * 297.62579 * 5 4 2 7 7 O 1.42901 * 109.52202 * 177.49909 * 5 4 2 8 8 C 1.34934 * 116.99894 * 150.12777 * 7 5 4 9 9 H 1.08004 * 119.99676 * 359.72930 * 8 7 5 10 10 C 1.38628 * 119.99943 * 179.97438 * 8 7 5 11 11 N 1.31581 * 120.00158 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00049 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47055 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.47016 * 120.00168 * 12 10 8 15 15 H 1.48495 * 109.47483 * 240.00525 * 12 10 8 16 16 C 1.53118 * 109.21352 * 57.56549 * 5 4 2 17 17 C 1.53043 * 109.27577 * 302.37681 * 16 5 4 18 18 N 1.46848 * 109.52355 * 59.17811 * 17 16 5 19 19 H 1.09002 * 109.47130 * 300.02716 * 1 2 3 20 20 H 1.09005 * 109.47074 * 60.01778 * 1 2 3 21 21 H 1.08996 * 109.48104 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.55503 * 60.90488 * 4 2 1 23 23 H 1.08994 * 109.45827 * 300.77905 * 4 2 1 24 24 H 0.97005 * 120.00168 * 179.97438 * 11 10 8 25 25 H 1.08999 * 109.50667 * 62.31409 * 16 5 4 26 26 H 1.08998 * 109.50928 * 182.43689 * 16 5 4 27 27 H 1.08999 * 109.46016 * 179.19564 * 17 16 5 28 28 H 1.09000 * 109.46371 * 299.16326 * 17 16 5 29 29 H 1.00899 * 111.00244 * 174.16201 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0398 -0.7196 -1.2508 5 6 3.5708 -0.7361 -1.2357 6 1 3.9466 0.2866 -1.2678 7 8 4.0519 -1.4575 -2.3716 8 6 5.2483 -1.0850 -2.8721 9 1 5.7943 -0.2716 -2.4174 10 6 5.7743 -1.7431 -3.9730 11 7 5.1067 -2.7305 -4.5303 12 14 7.4303 -1.2269 -4.6664 13 1 7.9726 -0.0998 -3.8659 14 1 8.3715 -2.3741 -4.6061 15 1 7.2637 -0.7969 -6.0779 16 6 4.0547 -1.4190 0.0466 17 6 3.4864 -0.6779 1.2590 18 7 2.0192 -0.6919 1.1993 19 1 -0.3633 0.5143 0.8898 20 1 -0.3633 0.5136 -0.8902 21 1 -0.3635 -1.0276 0.0005 22 1 1.6904 -0.1961 -2.1408 23 1 1.6649 -1.7430 -1.2592 24 1 5.4746 -3.1908 -5.3009 25 1 3.7123 -2.4538 0.0593 26 1 5.1438 -1.3950 0.0831 27 1 3.8174 -1.1702 2.1734 28 1 3.8403 0.3530 1.2532 29 1 1.6194 -0.2927 2.0353 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261058951.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:17 Heat of formation + Delta-G solvation = -71.790580 kcal Electronic energy + Delta-G solvation = -11623.405177 eV Core-core repulsion = 9545.335754 eV Total energy + Delta-G solvation = -2078.069423 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.05910 -37.63466 -34.05720 -33.21279 -31.71241 -27.95974 -26.70069 -23.99880 -22.50406 -20.78705 -19.57633 -17.62033 -17.13326 -16.00521 -15.93586 -15.40437 -15.27051 -14.54116 -14.27869 -13.41416 -13.25233 -13.16544 -12.81794 -12.72112 -12.53754 -12.30730 -12.09791 -11.91921 -11.42656 -11.22819 -11.01497 -10.11407 -9.39735 -8.17867 -5.87072 1.37803 1.43929 1.54486 2.31998 3.14647 3.21654 3.56646 3.95442 3.99530 4.15393 4.26000 4.42171 4.48167 4.60619 4.68042 4.84385 4.94912 5.00553 5.10629 5.11195 5.15772 5.33353 5.37150 5.44628 6.06661 6.21367 6.61227 7.24971 8.08041 9.07570 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.070151 B = 0.009828 C = 0.009199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.043876 B = 2848.193647 C = 3043.109762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.093 3.907 3 H 0.041 0.959 4 C -0.102 4.102 5 C 0.085 3.915 6 H 0.029 0.971 7 O -0.331 6.331 8 C -0.372 4.372 9 H 0.069 0.931 10 C -0.045 4.045 11 N -0.942 5.942 12 Si 1.005 2.995 13 H -0.257 1.257 14 H -0.275 1.275 15 H -0.275 1.275 16 C -0.131 4.131 17 C 0.073 3.927 18 N -0.689 5.689 19 H 0.078 0.922 20 H 0.065 0.935 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.260 0.740 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.035 0.965 29 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.832 7.135 10.775 13.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.016 4.016 3 H 0.059 0.941 4 C -0.140 4.140 5 C 0.027 3.973 6 H 0.047 0.953 7 O -0.247 6.247 8 C -0.451 4.451 9 H 0.087 0.913 10 C -0.237 4.237 11 N -0.587 5.587 12 Si 0.827 3.173 13 H -0.181 1.181 14 H -0.201 1.201 15 H -0.200 1.200 16 C -0.169 4.169 17 C -0.057 4.057 18 N -0.324 5.324 19 H 0.097 0.903 20 H 0.084 0.916 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.113 0.887 28 H 0.053 0.947 29 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.969 6.280 10.307 13.052 hybrid contribution 1.072 0.917 -0.332 1.449 sum -3.897 7.197 9.975 12.903 Atomic orbital electron populations 1.21760 0.92084 1.02686 1.02902 1.21385 0.96658 0.94422 0.89174 0.94134 1.21633 0.93475 1.00994 0.97876 1.22139 0.94586 0.93534 0.87090 0.95294 1.85624 1.36144 1.58655 1.44258 1.21387 0.95469 1.16102 1.12136 0.91340 1.26232 1.03504 0.96865 0.97142 1.70212 1.40348 1.24526 1.23618 0.84700 0.76208 0.78218 0.78130 1.18124 1.20079 1.20042 1.22022 0.99602 1.00106 0.95202 1.21792 0.87774 0.98400 0.97703 1.60223 1.07063 1.59914 1.05168 0.90346 0.91559 0.92355 0.92353 0.92767 0.93100 0.93107 0.92891 0.88687 0.94698 0.82278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.43 71.98 0.68 -2.37 15 2 C 0.09 2.68 3.04 44.94 0.14 2.82 15 3 H 0.04 1.13 8.14 -2.39 -0.02 1.11 15 4 C -0.10 -4.01 5.03 30.65 0.15 -3.86 15 5 C 0.08 3.96 2.72 30.67 0.08 4.05 15 6 H 0.03 1.34 7.80 -2.38 -0.02 1.32 15 7 O -0.33 -20.20 9.43 -82.04 -0.77 -20.97 15 8 C -0.37 -22.78 9.78 67.91 0.66 -22.12 15 9 H 0.07 3.93 7.64 -2.91 -0.02 3.91 15 10 C -0.04 -2.73 5.49 84.82 0.47 -2.26 15 11 N -0.94 -61.90 13.67 21.61 0.30 -61.60 15 12 Si 1.01 46.26 29.55 68.60 2.03 48.29 15 13 H -0.26 -10.96 7.11 99.48 0.71 -10.26 15 14 H -0.28 -12.23 7.11 99.48 0.71 -11.53 15 15 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 16 C -0.13 -5.30 5.72 30.65 0.18 -5.12 15 17 C 0.07 2.11 6.55 86.33 0.57 2.68 15 18 N -0.69 -18.56 6.50 -491.66 -3.20 -21.76 15 19 H 0.08 1.32 8.14 -2.39 -0.02 1.30 15 20 H 0.07 1.41 8.14 -2.38 -0.02 1.39 15 21 H 0.06 1.39 8.14 -2.39 -0.02 1.37 15 22 H 0.06 2.33 8.14 -2.39 -0.02 2.31 15 23 H 0.05 2.31 8.14 -2.39 -0.02 2.29 15 24 H 0.26 15.82 8.31 -92.70 -0.77 15.05 15 25 H 0.05 2.23 8.14 -2.39 -0.02 2.21 15 26 H 0.05 2.21 8.14 -2.39 -0.02 2.19 15 27 H 0.09 2.31 8.14 -2.39 -0.02 2.29 15 28 H 0.03 0.96 8.14 -2.39 -0.02 0.94 15 29 H 0.36 7.11 8.79 -89.69 -0.79 6.32 15 Total: -1.00 -73.10 242.21 1.60 -71.50 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.33 Total: 10.72 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 2.92 Total: -26.19 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -2.90 Total: -83.36 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.77 Total: -20.97 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -73.10 1.60 -71.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058951.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.289 kcal (2) G-P(sol) polarization free energy of solvation -73.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds