Wall clock time and date at job start Mon Mar 30 2020 02:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46135 * 2 1 4 4 C 1.53036 * 109.46228 * 119.97717 * 2 1 3 5 5 C 1.53123 * 109.27643 * 179.18626 * 4 2 1 6 6 H 1.08998 * 109.52660 * 62.31307 * 5 4 2 7 7 O 1.42902 * 109.52208 * 182.44303 * 5 4 2 8 8 C 1.34927 * 116.99908 * 209.99880 * 7 5 4 9 9 H 1.08005 * 119.99959 * 0.02562 * 8 7 5 10 10 C 1.38632 * 119.99897 * 179.97438 * 8 7 5 11 11 N 1.31585 * 120.00487 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99903 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47294 * 90.00100 * 12 10 8 14 14 H 1.48500 * 109.47188 * 210.00023 * 12 10 8 15 15 H 1.48503 * 109.47114 * 330.00081 * 12 10 8 16 16 C 1.53124 * 109.15987 * 302.34589 * 5 4 2 17 17 C 1.53035 * 109.27796 * 57.65478 * 16 5 4 18 18 N 1.46848 * 109.52299 * 300.81845 * 17 16 5 19 19 H 1.08998 * 109.46794 * 299.99909 * 1 2 3 20 20 H 1.08992 * 109.47327 * 60.00272 * 1 2 3 21 21 H 1.09002 * 109.46587 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.50475 * 299.12849 * 4 2 1 23 23 H 1.09003 * 109.50424 * 59.20946 * 4 2 1 24 24 H 0.96996 * 120.00366 * 180.02562 * 11 10 8 25 25 H 1.08996 * 109.50044 * 177.60068 * 16 5 4 26 26 H 1.09005 * 109.50178 * 297.71210 * 16 5 4 27 27 H 1.08994 * 109.46449 * 60.83936 * 17 16 5 28 28 H 1.09000 * 109.45876 * 180.81594 * 17 16 5 29 29 H 1.00900 * 110.99780 * 297.64694 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 3.5710 -0.7363 1.2354 6 1 3.9459 0.2867 1.2681 7 8 4.0521 -1.4578 2.3712 8 6 5.2468 -1.0829 2.8740 9 1 5.7932 -0.2701 2.4187 10 6 5.7723 -1.7402 3.9756 11 7 5.1064 -2.7302 4.5306 12 14 7.4259 -1.2207 4.6721 13 1 7.2210 -0.1743 5.7058 14 1 8.0967 -2.3959 5.2837 15 1 8.2746 -0.6788 3.5807 16 6 4.0546 -1.4191 -0.0470 17 6 3.4863 -0.6779 -1.2593 18 7 2.0191 -0.6918 -1.1994 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5137 -0.8899 21 1 -0.3632 -1.0277 0.0005 22 1 1.6896 -0.1982 2.1399 23 1 1.6653 -1.7445 1.2579 24 1 5.4739 -3.1898 5.3016 25 1 5.1437 -1.3952 -0.0835 26 1 3.7122 -2.4539 -0.0597 27 1 3.8403 0.3530 -1.2535 28 1 3.8170 -1.1703 -2.1738 29 1 1.6644 -1.6354 -1.2426 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261058954.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:21 Heat of formation + Delta-G solvation = -49.992753 kcal Electronic energy + Delta-G solvation = -11640.970715 eV Core-core repulsion = 9563.846517 eV Total energy + Delta-G solvation = -2077.124198 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.71560 -35.75371 -32.10539 -31.72811 -29.69966 -26.69453 -24.49995 -22.48472 -21.01287 -19.88586 -17.51381 -15.63724 -14.92997 -14.79934 -14.17815 -13.82622 -13.62285 -12.92208 -12.63074 -12.03914 -11.72086 -11.61103 -11.29527 -11.09507 -11.01175 -10.65553 -10.58624 -10.31953 -9.89632 -9.38478 -9.12009 -8.11855 -7.95016 -5.94359 -3.57669 3.30661 3.33292 3.37239 4.29244 4.51688 5.02224 5.29351 5.39271 5.47248 5.56678 5.66896 5.77910 5.87479 5.94671 5.99862 6.16543 6.25797 6.34437 6.45517 6.50450 6.75837 6.89890 6.95606 7.33295 7.47327 7.63155 8.43847 9.49154 10.18765 11.26756 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.069941 B = 0.009856 C = 0.009237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.240022 B = 2840.197763 C = 3030.403192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.084 3.916 3 H 0.077 0.923 4 C -0.145 4.145 5 C 0.099 3.901 6 H 0.037 0.963 7 O -0.287 6.287 8 C -0.358 4.358 9 H 0.061 0.939 10 C 0.022 3.978 11 N -0.890 5.890 12 Si 0.924 3.076 13 H -0.281 1.281 14 H -0.283 1.283 15 H -0.276 1.276 16 C -0.175 4.175 17 C 0.060 3.940 18 N -0.684 5.684 19 H 0.059 0.941 20 H 0.059 0.941 21 H 0.053 0.947 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.258 0.742 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.979 4.448 -8.695 10.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.026 4.026 3 H 0.095 0.905 4 C -0.184 4.184 5 C 0.040 3.960 6 H 0.055 0.945 7 O -0.202 6.202 8 C -0.438 4.438 9 H 0.079 0.921 10 C -0.176 4.176 11 N -0.534 5.534 12 Si 0.751 3.249 13 H -0.207 1.207 14 H -0.209 1.209 15 H -0.201 1.201 16 C -0.215 4.215 17 C -0.070 4.070 18 N -0.313 5.313 19 H 0.078 0.922 20 H 0.078 0.922 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.139 4.745 -8.899 11.319 hybrid contribution 1.310 -0.304 1.048 1.705 sum -3.830 4.441 -7.851 9.799 Atomic orbital electron populations 1.21775 0.94607 1.01872 1.01640 1.21547 0.94855 0.98227 0.87967 0.90527 1.22338 0.96351 1.01250 0.98464 1.21706 0.92280 0.94427 0.87596 0.94505 1.85684 1.36229 1.56631 1.41672 1.20870 0.95112 1.16006 1.11770 0.92114 1.24946 0.98835 0.96921 0.96935 1.70019 1.37975 1.22630 1.22743 0.85989 0.82033 0.77801 0.79098 1.20721 1.20900 1.20076 1.22815 1.01812 1.00434 0.96440 1.21982 0.87226 1.00540 0.97253 1.60817 1.09042 1.22154 1.39302 0.92226 0.92238 0.92818 0.91441 0.91762 0.93260 0.91541 0.91999 0.91435 0.91260 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.47 37.16 0.35 -1.39 15 2 C 0.08 1.26 3.03 -67.72 -0.21 1.05 15 3 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 4 C -0.14 -2.71 5.01 -26.65 -0.13 -2.85 15 5 C 0.10 2.22 2.72 -26.60 -0.07 2.15 15 6 H 0.04 0.83 7.80 -51.93 -0.41 0.42 15 7 O -0.29 -8.36 9.43 -16.50 -0.16 -8.51 15 8 C -0.36 -10.68 9.78 30.88 0.30 -10.38 15 9 H 0.06 1.71 7.64 -52.48 -0.40 1.31 15 10 C 0.02 0.64 5.49 -17.51 -0.10 0.55 15 11 N -0.89 -28.37 13.68 55.48 0.76 -27.61 15 12 Si 0.92 22.36 29.55 -169.99 -5.02 17.34 15 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 14 H -0.28 -6.76 7.11 56.52 0.40 -6.35 15 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 16 C -0.18 -3.39 5.70 -26.65 -0.15 -3.54 15 17 C 0.06 0.91 6.55 -3.83 -0.03 0.89 15 18 N -0.68 -9.96 6.50 -106.76 -0.69 -10.65 15 19 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 20 H 0.06 0.68 8.14 -51.93 -0.42 0.25 15 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 23 H 0.06 1.24 8.14 -51.93 -0.42 0.82 15 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 15 25 H 0.07 1.35 8.14 -51.93 -0.42 0.92 15 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 15 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 28 H 0.07 0.94 8.14 -51.93 -0.42 0.51 15 29 H 0.34 4.66 8.79 -39.29 -0.35 4.32 15 LS Contribution 242.21 15.07 3.65 3.65 Total: -1.00 -32.55 242.21 -6.01 -38.56 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.51 Total: 0.75 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -0.03 Total: -13.52 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.06 Total: -38.26 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.16 Total: -8.51 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -32.55 -6.01 -38.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058954.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.435 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds