Wall clock time and date at job start Mon Mar 30 2020 02:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46135 * 2 1 4 4 C 1.53036 * 109.46228 * 119.97717 * 2 1 3 5 5 C 1.53123 * 109.27643 * 179.18626 * 4 2 1 6 6 H 1.08998 * 109.52660 * 62.31307 * 5 4 2 7 7 O 1.42902 * 109.52208 * 182.44303 * 5 4 2 8 8 C 1.34927 * 116.99908 * 209.99880 * 7 5 4 9 9 H 1.08005 * 119.99959 * 0.02562 * 8 7 5 10 10 C 1.38632 * 119.99897 * 179.97438 * 8 7 5 11 11 N 1.31585 * 120.00487 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99903 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47294 * 90.00100 * 12 10 8 14 14 H 1.48500 * 109.47188 * 210.00023 * 12 10 8 15 15 H 1.48503 * 109.47114 * 330.00081 * 12 10 8 16 16 C 1.53124 * 109.15987 * 302.34589 * 5 4 2 17 17 C 1.53035 * 109.27796 * 57.65478 * 16 5 4 18 18 N 1.46848 * 109.52299 * 300.81845 * 17 16 5 19 19 H 1.08998 * 109.46794 * 299.99909 * 1 2 3 20 20 H 1.08992 * 109.47327 * 60.00272 * 1 2 3 21 21 H 1.09002 * 109.46587 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.50475 * 299.12849 * 4 2 1 23 23 H 1.09003 * 109.50424 * 59.20946 * 4 2 1 24 24 H 0.96996 * 120.00366 * 180.02562 * 11 10 8 25 25 H 1.08996 * 109.50044 * 177.60068 * 16 5 4 26 26 H 1.09005 * 109.50178 * 297.71210 * 16 5 4 27 27 H 1.08994 * 109.46449 * 60.83936 * 17 16 5 28 28 H 1.09000 * 109.45876 * 180.81594 * 17 16 5 29 29 H 1.00900 * 110.99780 * 297.64694 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 3.5710 -0.7363 1.2354 6 1 3.9459 0.2867 1.2681 7 8 4.0521 -1.4578 2.3712 8 6 5.2468 -1.0829 2.8740 9 1 5.7932 -0.2701 2.4187 10 6 5.7723 -1.7402 3.9756 11 7 5.1064 -2.7302 4.5306 12 14 7.4259 -1.2207 4.6721 13 1 7.2210 -0.1743 5.7058 14 1 8.0967 -2.3959 5.2837 15 1 8.2746 -0.6788 3.5807 16 6 4.0546 -1.4191 -0.0470 17 6 3.4863 -0.6779 -1.2593 18 7 2.0191 -0.6918 -1.1994 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5137 -0.8899 21 1 -0.3632 -1.0277 0.0005 22 1 1.6896 -0.1982 2.1399 23 1 1.6653 -1.7445 1.2579 24 1 5.4739 -3.1898 5.3016 25 1 5.1437 -1.3952 -0.0835 26 1 3.7122 -2.4539 -0.0597 27 1 3.8403 0.3530 -1.2535 28 1 3.8170 -1.1703 -2.1738 29 1 1.6644 -1.6354 -1.2426 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261058954.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:21 Heat of formation + Delta-G solvation = -74.127945 kcal Electronic energy + Delta-G solvation = -11642.017296 eV Core-core repulsion = 9563.846517 eV Total energy + Delta-G solvation = -2078.170779 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.22955 -37.65921 -34.04413 -33.24764 -31.38690 -27.96771 -26.70669 -23.94687 -22.39474 -21.42563 -19.67671 -17.53237 -16.54475 -16.08467 -15.99906 -15.31433 -15.29724 -14.48946 -14.39229 -13.45123 -13.36498 -13.16912 -12.92266 -12.68356 -12.52922 -12.24990 -12.13161 -11.86449 -11.66800 -11.24139 -11.07854 -10.14956 -9.42568 -8.20543 -5.89884 1.36239 1.42975 1.52111 2.29894 3.11900 3.26376 3.52593 3.95801 4.06353 4.12588 4.24394 4.34188 4.44135 4.62530 4.71833 4.88381 4.92825 4.99804 5.03839 5.10944 5.17199 5.32419 5.34669 5.36831 6.05038 6.18402 6.45381 7.22343 8.04574 9.04384 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.069941 B = 0.009856 C = 0.009237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.240022 B = 2840.197763 C = 3030.403192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.092 3.908 3 H 0.079 0.921 4 C -0.137 4.137 5 C 0.084 3.916 6 H 0.031 0.969 7 O -0.332 6.332 8 C -0.373 4.373 9 H 0.069 0.931 10 C -0.044 4.044 11 N -0.942 5.942 12 Si 1.005 2.995 13 H -0.269 1.269 14 H -0.278 1.278 15 H -0.259 1.259 16 C -0.167 4.167 17 C 0.071 3.929 18 N -0.674 5.674 19 H 0.065 0.935 20 H 0.076 0.924 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.260 0.740 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.783 5.498 -9.845 12.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.018 4.018 3 H 0.098 0.902 4 C -0.177 4.177 5 C 0.026 3.974 6 H 0.049 0.951 7 O -0.248 6.248 8 C -0.452 4.452 9 H 0.086 0.914 10 C -0.237 4.237 11 N -0.587 5.587 12 Si 0.827 3.173 13 H -0.195 1.195 14 H -0.203 1.203 15 H -0.183 1.183 16 C -0.206 4.206 17 C -0.059 4.059 18 N -0.303 5.303 19 H 0.084 0.916 20 H 0.095 0.905 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.114 0.886 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.965 5.810 -10.084 12.653 hybrid contribution 1.183 -0.624 1.356 1.904 sum -3.782 5.186 -8.728 10.835 Atomic orbital electron populations 1.21734 0.92166 1.02548 1.02825 1.21553 0.96708 0.97644 0.85925 0.90241 1.22352 0.93793 1.01139 1.00392 1.22126 0.94461 0.93782 0.87026 0.95071 1.85612 1.36314 1.58519 1.44342 1.21338 0.95605 1.16165 1.12107 0.91386 1.26228 1.03497 0.96811 0.97143 1.70195 1.40529 1.24357 1.23617 0.84772 0.76299 0.77698 0.78576 1.19490 1.20297 1.18328 1.22727 1.00935 1.00072 0.96909 1.21963 0.87455 1.00490 0.96029 1.60862 1.08353 1.22627 1.38411 0.91604 0.90502 0.92443 0.92534 0.92798 0.93082 0.93086 0.93158 0.90806 0.88636 0.83803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.47 71.98 0.68 -2.31 15 2 C 0.09 2.58 3.03 44.94 0.14 2.72 15 3 H 0.08 2.23 8.14 -2.39 -0.02 2.21 15 4 C -0.14 -5.16 5.01 30.65 0.15 -5.00 15 5 C 0.08 3.83 2.72 30.68 0.08 3.91 15 6 H 0.03 1.42 7.80 -2.39 -0.02 1.40 15 7 O -0.33 -19.95 9.43 -81.96 -0.77 -20.72 15 8 C -0.37 -22.70 9.78 67.91 0.66 -22.03 15 9 H 0.07 3.88 7.64 -2.91 -0.02 3.86 15 10 C -0.04 -2.67 5.49 84.82 0.47 -2.20 15 11 N -0.94 -61.45 13.68 21.61 0.30 -61.15 15 12 Si 1.00 46.02 29.55 68.60 2.03 48.04 15 13 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 14 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 15 H -0.26 -11.06 7.11 99.48 0.71 -10.35 15 16 C -0.17 -6.42 5.70 30.65 0.17 -6.25 15 17 C 0.07 2.00 6.55 86.32 0.57 2.57 15 18 N -0.67 -17.88 6.50 -491.68 -3.20 -21.07 15 19 H 0.06 1.38 8.14 -2.39 -0.02 1.36 15 20 H 0.08 1.48 8.14 -2.39 -0.02 1.46 15 21 H 0.06 1.23 8.14 -2.39 -0.02 1.21 15 22 H 0.06 2.20 8.14 -2.39 -0.02 2.18 15 23 H 0.05 2.10 8.14 -2.39 -0.02 2.08 15 24 H 0.26 15.77 8.31 -92.71 -0.77 15.00 15 25 H 0.05 2.08 8.14 -2.39 -0.02 2.06 15 26 H 0.05 2.02 8.14 -2.38 -0.02 2.00 15 27 H 0.07 2.04 8.14 -2.39 -0.02 2.02 15 28 H 0.10 2.28 8.14 -2.39 -0.02 2.26 15 29 H 0.34 8.65 8.79 -89.69 -0.79 7.86 15 Total: -1.00 -71.19 242.21 1.60 -69.58 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.33 Total: 13.92 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 2.93 Total: -28.59 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -2.90 Total: -82.22 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.77 Total: -20.72 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -71.19 1.60 -69.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058954.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.547 kcal (2) G-P(sol) polarization free energy of solvation -71.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds