Wall clock time and date at job start Mon Mar 30 2020 02:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99977 * 2 1 4 4 C 1.53003 * 109.46893 * 180.02562 * 3 2 1 5 5 H 1.09010 * 109.46794 * 184.61724 * 4 3 2 6 6 C 1.50703 * 109.47136 * 304.61295 * 4 3 2 7 7 H 1.08000 * 119.99666 * 94.59583 * 6 4 3 8 8 C 1.37870 * 120.00127 * 274.59997 * 6 4 3 9 9 N 1.31519 * 120.00327 * 6.42564 * 8 6 4 10 10 Si 1.86803 * 120.00019 * 186.42714 * 8 6 4 11 11 H 1.48504 * 109.47357 * 180.02562 * 10 8 6 12 12 H 1.48503 * 109.46826 * 299.99675 * 10 8 6 13 13 H 1.48495 * 109.47040 * 59.99742 * 10 8 6 14 14 N 1.46891 * 109.47609 * 64.61734 * 4 3 2 15 15 C 1.46901 * 111.00183 * 84.99942 * 14 4 3 16 16 C 1.53006 * 117.49989 * 223.62648 * 15 14 4 17 17 C 1.53001 * 117.50049 * 155.00173 * 15 14 4 18 18 H 1.08995 * 109.47670 * 59.99836 * 1 2 3 19 19 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47245 * 299.99834 * 1 2 3 21 21 H 1.08995 * 109.47088 * 60.00567 * 3 2 1 22 22 H 1.09003 * 109.47213 * 300.00213 * 3 2 1 23 23 H 0.97002 * 119.99782 * 355.04552 * 9 8 6 24 24 H 1.00904 * 111.00230 * 321.04516 * 14 4 3 25 25 H 1.09002 * 115.54672 * 9.32807 * 15 14 4 26 26 H 1.08996 * 117.49657 * 359.97438 * 16 15 14 27 27 H 1.08993 * 117.50075 * 145.01974 * 16 15 14 28 28 H 1.08995 * 117.49786 * 214.97886 * 17 15 14 29 29 H 1.09002 * 117.49719 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9786 2.1771 0.0821 6 6 3.9729 0.3401 1.1684 7 1 4.1404 -0.7187 1.0369 8 6 4.1593 0.9192 2.4056 9 7 3.8352 2.1793 2.5975 10 14 4.8723 -0.0860 3.8095 11 1 4.9706 0.7615 5.0250 12 1 3.9881 -1.2466 4.0861 13 1 6.2241 -0.5720 3.4336 14 7 3.9762 0.5543 -1.2521 15 6 4.1178 1.5509 -2.3221 16 6 3.5722 1.1859 -3.7042 17 6 5.0828 1.2284 -3.4648 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.6886 1.8463 0.8900 22 1 1.6885 1.8464 -0.8900 23 1 3.5328 2.7212 1.8520 24 1 3.3458 -0.1840 -1.5268 25 1 4.0391 2.5918 -2.0084 26 1 3.1086 0.2062 -3.8196 27 1 3.1343 1.9867 -4.3000 28 1 5.6387 2.0572 -3.9031 29 1 5.6130 0.2769 -3.4224 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261137094.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:09 Heat of formation + Delta-G solvation = -23.230384 kcal Electronic energy + Delta-G solvation = -11629.635453 eV Core-core repulsion = 9553.671758 eV Total energy + Delta-G solvation = -2075.963695 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.85358 -36.55958 -33.93584 -31.41618 -27.40840 -25.53296 -24.35898 -21.97620 -20.95410 -20.35462 -16.92578 -15.87369 -15.14029 -14.87048 -14.72218 -13.96010 -13.66789 -12.82370 -12.42225 -12.26632 -11.36367 -11.26758 -11.14344 -10.81942 -10.67143 -10.29461 -10.26972 -10.01829 -9.84123 -8.93695 -8.54398 -8.28211 -7.20559 -6.30671 -3.96417 3.50764 3.53496 3.71538 4.31765 4.53739 4.67790 4.97436 5.35191 5.40951 5.45576 5.72422 5.80738 5.87791 5.95506 6.04544 6.08152 6.18054 6.31031 6.48439 6.52349 6.75632 6.80944 7.89931 7.97527 8.30438 8.45087 8.67838 8.93652 9.69746 11.07644 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.033627 B = 0.013882 C = 0.011007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.463040 B = 2016.569802 C = 2543.215264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.040 3.960 4 C 0.204 3.796 5 H 0.052 0.948 6 C -0.553 4.553 7 H 0.056 0.944 8 C 0.014 3.986 9 N -0.920 5.920 10 Si 1.073 2.927 11 H -0.285 1.285 12 H -0.289 1.289 13 H -0.288 1.288 14 N -0.642 5.642 15 C 0.034 3.966 16 C -0.219 4.219 17 C -0.179 4.179 18 H 0.025 0.975 19 H 0.075 0.925 20 H 0.033 0.967 21 H 0.045 0.955 22 H 0.010 0.990 23 H 0.263 0.737 24 H 0.338 0.662 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.293 -1.276 -7.506 8.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C -0.039 4.039 4 C 0.096 3.904 5 H 0.070 0.930 6 C -0.592 4.592 7 H 0.075 0.925 8 C -0.189 4.189 9 N -0.558 5.558 10 Si 0.902 3.098 11 H -0.211 1.211 12 H -0.215 1.215 13 H -0.214 1.214 14 N -0.271 5.271 15 C -0.078 4.078 16 C -0.258 4.258 17 C -0.218 4.218 18 H 0.044 0.956 19 H 0.094 0.906 20 H 0.051 0.949 21 H 0.063 0.937 22 H 0.028 0.972 23 H 0.074 0.926 24 H 0.157 0.843 25 H 0.116 0.884 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.124 -1.388 -5.680 6.221 hybrid contribution -1.674 0.455 -1.979 2.632 sum -3.798 -0.933 -7.659 8.600 Atomic orbital electron populations 1.22611 0.83768 1.01386 0.98766 1.87950 1.17055 1.28655 1.94963 1.23585 0.99678 0.83493 0.97157 1.19569 0.86455 0.96311 0.88067 0.93049 1.21690 1.47425 0.96190 0.93874 0.92528 1.25831 0.95142 0.97648 1.00251 1.70868 1.43098 1.07873 1.33935 0.83477 0.76282 0.74741 0.75337 1.21062 1.21547 1.21409 1.60509 1.54065 1.10523 1.02028 1.22595 1.02110 0.96590 0.86530 1.23373 0.97350 1.02425 1.02619 1.23049 0.91858 1.02995 1.03900 0.95628 0.90646 0.94872 0.93706 0.97199 0.92614 0.84282 0.88409 0.89255 0.89763 0.89572 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 101.05 1.11 1.67 15 2 O -0.37 -8.32 9.54 -35.23 -0.34 -8.66 15 3 C 0.04 0.92 5.53 37.16 0.21 1.13 15 4 C 0.20 5.15 1.99 -68.87 -0.14 5.02 15 5 H 0.05 1.38 6.39 -51.92 -0.33 1.05 15 6 C -0.55 -15.75 8.16 -34.44 -0.28 -16.03 15 7 H 0.06 1.67 7.82 -52.49 -0.41 1.26 15 8 C 0.01 0.39 5.45 -17.82 -0.10 0.29 15 9 N -0.92 -27.56 13.63 55.43 0.76 -26.80 15 10 Si 1.07 25.81 29.91 -169.99 -5.08 20.72 15 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 13 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 14 N -0.64 -14.39 6.51 -100.95 -0.66 -15.05 15 15 C 0.03 0.63 6.04 -67.71 -0.41 0.22 15 16 C -0.22 -3.39 10.23 -26.72 -0.27 -3.66 15 17 C -0.18 -2.88 10.46 -26.73 -0.28 -3.16 15 18 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 15 19 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 20 H 0.03 0.57 8.14 -51.93 -0.42 0.14 15 21 H 0.04 1.12 7.68 -51.93 -0.40 0.72 15 22 H 0.01 0.21 7.99 -51.93 -0.42 -0.21 15 23 H 0.26 7.75 6.28 -40.82 -0.26 7.49 15 24 H 0.34 7.42 7.71 -39.29 -0.30 7.12 15 25 H 0.10 1.85 7.60 -51.93 -0.39 1.45 15 26 H 0.09 1.37 8.09 -51.93 -0.42 0.95 15 27 H 0.08 1.16 8.14 -51.93 -0.42 0.73 15 28 H 0.09 1.22 8.14 -51.93 -0.42 0.79 15 29 H 0.09 1.53 8.14 -51.93 -0.42 1.11 15 LS Contribution 248.19 15.07 3.74 3.74 Total: -1.00 -30.27 248.19 -6.00 -36.27 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.26 Total: 4.29 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -0.16 Total: -14.51 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.10 Total: -41.85 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.34 Total: -8.66 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -5.08 Total: 20.72 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.27 -6.00 -36.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137094.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.040 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds