Wall clock time and date at job start Mon Mar 30 2020 02:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99977 * 2 1 4 4 C 1.53003 * 109.46893 * 180.02562 * 3 2 1 5 5 H 1.09010 * 109.46794 * 184.61724 * 4 3 2 6 6 C 1.50703 * 109.47136 * 304.61295 * 4 3 2 7 7 H 1.08000 * 119.99666 * 94.59583 * 6 4 3 8 8 C 1.37870 * 120.00127 * 274.59997 * 6 4 3 9 9 N 1.31519 * 120.00327 * 6.42564 * 8 6 4 10 10 Si 1.86803 * 120.00019 * 186.42714 * 8 6 4 11 11 H 1.48504 * 109.47357 * 180.02562 * 10 8 6 12 12 H 1.48503 * 109.46826 * 299.99675 * 10 8 6 13 13 H 1.48495 * 109.47040 * 59.99742 * 10 8 6 14 14 N 1.46891 * 109.47609 * 64.61734 * 4 3 2 15 15 C 1.46901 * 111.00183 * 84.99942 * 14 4 3 16 16 C 1.53006 * 117.49989 * 223.62648 * 15 14 4 17 17 C 1.53001 * 117.50049 * 155.00173 * 15 14 4 18 18 H 1.08995 * 109.47670 * 59.99836 * 1 2 3 19 19 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47245 * 299.99834 * 1 2 3 21 21 H 1.08995 * 109.47088 * 60.00567 * 3 2 1 22 22 H 1.09003 * 109.47213 * 300.00213 * 3 2 1 23 23 H 0.97002 * 119.99782 * 355.04552 * 9 8 6 24 24 H 1.00904 * 111.00230 * 321.04516 * 14 4 3 25 25 H 1.09002 * 115.54672 * 9.32807 * 15 14 4 26 26 H 1.08996 * 117.49657 * 359.97438 * 16 15 14 27 27 H 1.08993 * 117.50075 * 145.01974 * 16 15 14 28 28 H 1.08995 * 117.49786 * 214.97886 * 17 15 14 29 29 H 1.09002 * 117.49719 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9786 2.1771 0.0821 6 6 3.9729 0.3401 1.1684 7 1 4.1404 -0.7187 1.0369 8 6 4.1593 0.9192 2.4056 9 7 3.8352 2.1793 2.5975 10 14 4.8723 -0.0860 3.8095 11 1 4.9706 0.7615 5.0250 12 1 3.9881 -1.2466 4.0861 13 1 6.2241 -0.5720 3.4336 14 7 3.9762 0.5543 -1.2521 15 6 4.1178 1.5509 -2.3221 16 6 3.5722 1.1859 -3.7042 17 6 5.0828 1.2284 -3.4648 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.6886 1.8463 0.8900 22 1 1.6885 1.8464 -0.8900 23 1 3.5328 2.7212 1.8520 24 1 3.3458 -0.1840 -1.5268 25 1 4.0391 2.5918 -2.0084 26 1 3.1086 0.2062 -3.8196 27 1 3.1343 1.9867 -4.3000 28 1 5.6387 2.0572 -3.9031 29 1 5.6130 0.2769 -3.4224 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261137094.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:09 Heat of formation + Delta-G solvation = -44.776452 kcal Electronic energy + Delta-G solvation = -11630.569760 eV Core-core repulsion = 9553.671758 eV Total energy + Delta-G solvation = -2076.898002 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.53188 -38.09116 -35.84055 -33.34153 -29.09817 -27.28039 -26.32190 -23.23846 -22.76105 -21.99334 -18.97501 -17.54230 -16.78953 -16.49887 -16.29756 -15.64937 -15.48353 -14.69477 -14.09479 -13.87267 -13.11574 -12.92961 -12.67737 -12.42353 -12.36610 -12.10881 -11.91270 -11.81837 -11.28350 -10.71733 -10.58326 -10.34120 -8.90591 -8.55728 -6.22973 1.55752 1.64137 1.83429 2.59498 2.92632 3.03499 3.20326 3.49730 4.01337 4.12297 4.20048 4.33112 4.43379 4.47284 4.58518 4.69150 4.74994 4.75381 4.83367 4.94608 5.07097 5.28803 5.92051 6.16026 6.35887 6.51183 6.71312 6.78620 7.50101 8.82249 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.033627 B = 0.013882 C = 0.011007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.463040 B = 2016.569802 C = 2543.215264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.393 6.393 3 C 0.057 3.943 4 C 0.206 3.794 5 H 0.026 0.974 6 C -0.564 4.564 7 H 0.041 0.959 8 C -0.035 4.035 9 N -0.942 5.942 10 Si 1.116 2.884 11 H -0.284 1.284 12 H -0.276 1.276 13 H -0.274 1.274 14 N -0.652 5.652 15 C -0.006 4.006 16 C -0.190 4.190 17 C -0.167 4.167 18 H 0.048 0.952 19 H 0.101 0.899 20 H 0.031 0.969 21 H 0.018 0.982 22 H 0.032 0.968 23 H 0.254 0.746 24 H 0.337 0.663 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.629 -1.921 -8.691 9.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.312 6.312 3 C -0.022 4.022 4 C 0.096 3.904 5 H 0.044 0.956 6 C -0.603 4.603 7 H 0.059 0.941 8 C -0.232 4.232 9 N -0.581 5.581 10 Si 0.939 3.061 11 H -0.210 1.210 12 H -0.201 1.201 13 H -0.200 1.200 14 N -0.281 5.281 15 C -0.117 4.117 16 C -0.229 4.229 17 C -0.205 4.205 18 H 0.067 0.933 19 H 0.119 0.881 20 H 0.049 0.951 21 H 0.037 0.963 22 H 0.050 0.950 23 H 0.064 0.936 24 H 0.156 0.844 25 H 0.108 0.892 26 H 0.112 0.888 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.470 -2.035 -6.902 7.608 hybrid contribution -1.617 0.646 -1.716 2.444 sum -4.087 -1.389 -8.618 9.638 Atomic orbital electron populations 1.22884 0.80948 1.03495 0.99791 1.87892 1.20149 1.28040 1.95130 1.23191 0.98248 0.83967 0.96838 1.19330 0.87783 0.94510 0.88731 0.95581 1.21954 1.47199 0.95769 0.95358 0.94064 1.27146 0.95090 0.97985 1.02964 1.70966 1.44828 1.08639 1.33697 0.82926 0.76492 0.73905 0.72798 1.20960 1.20113 1.19951 1.60378 1.54021 1.11462 1.02236 1.22626 1.06387 0.95501 0.87150 1.23413 0.96973 1.03307 0.99184 1.23126 0.92528 1.03535 1.01346 0.93297 0.88066 0.95064 0.96341 0.94982 0.93596 0.84359 0.89158 0.88801 0.87287 0.87345 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 15 2 O -0.39 -17.52 9.54 -148.98 -1.42 -18.94 15 3 C 0.06 2.64 5.53 71.98 0.40 3.04 15 4 C 0.21 10.56 1.99 44.17 0.09 10.65 15 5 H 0.03 1.47 6.39 -2.38 -0.02 1.45 15 6 C -0.56 -32.68 8.16 25.60 0.21 -32.47 15 7 H 0.04 2.46 7.82 -2.91 -0.02 2.44 15 8 C -0.04 -2.05 5.45 84.65 0.46 -1.59 15 9 N -0.94 -57.62 13.63 21.45 0.29 -57.33 15 10 Si 1.12 52.08 29.91 68.60 2.05 54.14 15 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 15 12 H -0.28 -12.15 7.11 99.48 0.71 -11.45 15 13 H -0.27 -12.07 7.11 99.48 0.71 -11.36 15 14 N -0.65 -29.17 6.51 -473.29 -3.08 -32.25 15 15 C -0.01 -0.20 6.04 44.92 0.27 0.07 15 16 C -0.19 -5.31 10.23 30.60 0.31 -5.00 15 17 C -0.17 -4.95 10.46 30.60 0.32 -4.63 15 18 H 0.05 1.38 8.14 -2.39 -0.02 1.36 15 19 H 0.10 2.78 8.14 -2.39 -0.02 2.76 15 20 H 0.03 1.03 8.14 -2.39 -0.02 1.01 15 21 H 0.02 0.94 7.68 -2.39 -0.02 0.92 15 22 H 0.03 1.33 7.99 -2.39 -0.02 1.31 15 23 H 0.25 15.50 6.28 -92.71 -0.58 14.92 15 24 H 0.34 14.68 7.71 -89.69 -0.69 13.99 15 25 H 0.09 3.40 7.60 -2.39 -0.02 3.38 15 26 H 0.09 2.57 8.09 -2.39 -0.02 2.55 15 27 H 0.11 2.54 8.14 -2.39 -0.02 2.52 15 28 H 0.11 2.73 8.14 -2.39 -0.02 2.71 15 29 H 0.09 2.75 8.14 -2.39 -0.02 2.73 15 Total: -1.00 -65.18 248.19 1.77 -63.42 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.62 Total: 18.82 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: 3.31 Total: -27.85 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -2.79 Total: -89.58 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -1.42 Total: -18.94 kcal Atomic # 14 Polarization: 52.08 SS G_CDS: 2.05 Total: 54.14 kcal Total: -65.18 1.77 -63.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137094.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.640 kcal (2) G-P(sol) polarization free energy of solvation -65.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds