Wall clock time and date at job start Mon Mar 30 2020 02:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00187 * 2 1 4 4 C 1.52999 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46971 * 174.99845 * 4 3 2 6 6 C 1.50702 * 109.47088 * 54.99642 * 4 3 2 7 7 H 1.07998 * 119.99698 * 239.99567 * 6 4 3 8 8 C 1.37882 * 119.99829 * 60.00166 * 6 4 3 9 9 N 1.31506 * 120.00055 * 359.97438 * 8 6 4 10 10 Si 1.86801 * 119.99762 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47087 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46823 * 119.99661 * 10 8 6 13 13 H 1.48494 * 109.47477 * 239.99923 * 10 8 6 14 14 N 1.46899 * 109.47195 * 294.99677 * 4 3 2 15 15 C 1.46902 * 111.00033 * 275.00210 * 14 4 3 16 16 C 1.53000 * 117.50126 * 205.00080 * 15 14 4 17 17 C 1.52997 * 117.50071 * 136.37312 * 15 14 4 18 18 H 1.09001 * 109.46991 * 60.00758 * 1 2 3 19 19 H 1.09004 * 109.46914 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47367 * 300.00511 * 1 2 3 21 21 H 1.09004 * 109.47321 * 59.99248 * 3 2 1 22 22 H 1.09001 * 109.46843 * 299.99323 * 3 2 1 23 23 H 0.97001 * 119.99937 * 180.02562 * 9 8 6 24 24 H 1.00896 * 111.00296 * 151.04740 * 14 4 3 25 25 H 1.09002 * 115.55860 * 350.68531 * 15 14 4 26 26 H 1.08990 * 117.49990 * 145.01711 * 16 15 14 27 27 H 1.09004 * 117.49237 * 359.97438 * 16 15 14 28 28 H 1.08999 * 117.49685 * 0.02562 * 17 15 14 29 29 H 1.08999 * 117.52022 * 214.96909 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9785 2.1764 -0.0889 6 6 3.9723 0.3322 -1.1629 7 1 4.5229 -0.5801 -0.9871 8 6 3.6692 0.7173 -2.4517 9 7 2.9985 1.8280 -2.6655 10 14 4.2114 -0.3389 -3.8939 11 1 4.9444 -1.5276 -3.3889 12 1 3.0182 -0.7820 -4.6589 13 1 5.1018 0.4527 -4.7801 14 7 3.9769 0.5627 1.2562 15 6 4.1189 1.5665 2.3194 16 6 5.0844 1.2517 3.4637 17 6 3.5739 1.2109 3.7040 18 1 -0.3633 0.5137 -0.8901 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 1.6885 1.8465 0.8899 22 1 1.6887 1.8463 -0.8901 23 1 2.7850 2.0987 -3.5722 24 1 4.8369 0.0519 1.1239 25 1 4.0398 2.6053 1.9989 26 1 5.6405 2.0834 3.8961 27 1 5.6140 0.2996 3.4278 28 1 3.1104 0.2319 3.8263 29 1 3.1364 2.0155 4.2950 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261137095.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:11 Heat of formation + Delta-G solvation = -17.977852 kcal Electronic energy + Delta-G solvation = -11645.589088 eV Core-core repulsion = 9569.853161 eV Total energy + Delta-G solvation = -2075.735928 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.44138 -36.22996 -33.63752 -31.43930 -27.34836 -25.58045 -24.31890 -21.88339 -20.86347 -19.71481 -16.55190 -15.54725 -14.92264 -14.73903 -14.18565 -14.04978 -13.59008 -13.07738 -12.15966 -11.97239 -11.24216 -11.07023 -10.85617 -10.82514 -10.69169 -10.25732 -10.14377 -9.98332 -9.53892 -8.88666 -8.54085 -8.19816 -7.18449 -6.01640 -4.04379 3.32347 3.39849 3.44984 4.39851 4.43663 5.02007 5.20233 5.32880 5.45818 5.54192 5.96310 6.03123 6.11507 6.21714 6.22900 6.37806 6.42521 6.62234 6.67879 7.06881 7.16600 7.48346 7.82197 8.08009 8.28221 8.56381 8.76288 9.00381 9.60062 11.05805 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.037719 B = 0.013587 C = 0.011106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.161941 B = 2060.274149 C = 2520.458441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.085 3.915 4 C 0.217 3.783 5 H 0.019 0.981 6 C -0.499 4.499 7 H 0.062 0.938 8 C 0.062 3.938 9 N -0.898 5.898 10 Si 0.900 3.100 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.286 1.286 14 N -0.650 5.650 15 C 0.031 3.969 16 C -0.204 4.204 17 C -0.180 4.180 18 H 0.027 0.973 19 H 0.067 0.933 20 H 0.020 0.980 21 H -0.001 1.001 22 H 0.074 0.926 23 H 0.260 0.740 24 H 0.336 0.664 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.443 -0.046 6.498 6.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C 0.007 3.993 4 C 0.110 3.890 5 H 0.036 0.964 6 C -0.538 4.538 7 H 0.080 0.920 8 C -0.139 4.139 9 N -0.538 5.538 10 Si 0.728 3.272 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.213 1.213 14 N -0.281 5.281 15 C -0.080 4.080 16 C -0.242 4.242 17 C -0.218 4.218 18 H 0.045 0.955 19 H 0.085 0.915 20 H 0.039 0.961 21 H 0.017 0.983 22 H 0.092 0.908 23 H 0.070 0.930 24 H 0.156 0.844 25 H 0.107 0.893 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.024 -0.303 6.503 6.590 hybrid contribution 0.664 0.232 -1.037 1.253 sum -0.360 -0.071 5.465 5.478 Atomic orbital electron populations 1.22508 0.85123 1.00518 0.98188 1.88021 1.15627 1.29137 1.94891 1.22628 0.95989 0.83209 0.97454 1.19245 0.90349 0.94102 0.85343 0.96387 1.21114 1.34823 1.07794 0.90023 0.92000 1.24862 0.94967 0.95124 0.98903 1.69859 1.40188 1.22854 1.20909 0.86403 0.78228 0.80378 0.82143 1.19737 1.21049 1.21263 1.60349 1.35468 1.24572 1.07722 1.22515 1.01609 0.95748 0.88177 1.23174 0.92987 1.02554 1.05521 1.23054 0.95256 1.02736 1.00765 0.95484 0.91485 0.96143 0.98311 0.90802 0.93010 0.84398 0.89308 0.89713 0.89074 0.88796 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 101.05 1.11 1.80 15 2 O -0.36 -9.04 10.13 -35.23 -0.36 -9.40 15 3 C 0.08 2.14 5.40 37.16 0.20 2.34 15 4 C 0.22 5.57 2.36 -68.86 -0.16 5.40 15 5 H 0.02 0.50 7.57 -51.93 -0.39 0.11 15 6 C -0.50 -13.85 8.11 -34.44 -0.28 -14.13 15 7 H 0.06 1.72 7.62 -52.49 -0.40 1.32 15 8 C 0.06 1.74 5.30 -17.82 -0.09 1.64 15 9 N -0.90 -25.63 11.37 55.43 0.63 -25.00 15 10 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 15 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 15 12 H -0.28 -6.88 7.11 56.52 0.40 -6.47 15 13 H -0.29 -6.80 7.11 56.52 0.40 -6.39 15 14 N -0.65 -14.48 6.50 -100.95 -0.66 -15.13 15 15 C 0.03 0.59 5.97 -67.71 -0.40 0.18 15 16 C -0.20 -3.14 10.33 -26.73 -0.28 -3.42 15 17 C -0.18 -2.92 10.46 -26.73 -0.28 -3.20 15 18 H 0.03 0.53 8.14 -51.93 -0.42 0.11 15 19 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 20 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 15 21 H 0.00 -0.03 7.99 -51.93 -0.41 -0.44 15 22 H 0.07 2.02 6.22 -51.93 -0.32 1.70 15 23 H 0.26 7.07 8.31 -40.82 -0.34 6.73 15 24 H 0.34 7.29 8.18 -39.29 -0.32 6.97 15 25 H 0.09 1.71 7.60 -51.93 -0.39 1.31 15 26 H 0.08 1.15 8.14 -51.93 -0.42 0.72 15 27 H 0.09 1.37 8.14 -51.93 -0.42 0.95 15 28 H 0.09 1.59 8.14 -51.93 -0.42 1.17 15 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 LS Contribution 248.29 15.07 3.74 3.74 Total: -1.00 -29.18 248.29 -6.19 -35.36 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -4.34 Total: 3.12 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -0.18 Total: -9.38 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: -0.03 Total: -40.13 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -0.36 Total: -9.40 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.18 -6.19 -35.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137095.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.383 kcal (2) G-P(sol) polarization free energy of solvation -29.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds