Wall clock time and date at job start Mon Mar 30 2020 02:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00187 * 2 1 4 4 C 1.52999 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46971 * 174.99845 * 4 3 2 6 6 C 1.50702 * 109.47088 * 54.99642 * 4 3 2 7 7 H 1.07998 * 119.99698 * 239.99567 * 6 4 3 8 8 C 1.37882 * 119.99829 * 60.00166 * 6 4 3 9 9 N 1.31506 * 120.00055 * 359.97438 * 8 6 4 10 10 Si 1.86801 * 119.99762 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47087 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46823 * 119.99661 * 10 8 6 13 13 H 1.48494 * 109.47477 * 239.99923 * 10 8 6 14 14 N 1.46899 * 109.47195 * 294.99677 * 4 3 2 15 15 C 1.46902 * 111.00033 * 275.00210 * 14 4 3 16 16 C 1.53000 * 117.50126 * 205.00080 * 15 14 4 17 17 C 1.52997 * 117.50071 * 136.37312 * 15 14 4 18 18 H 1.09001 * 109.46991 * 60.00758 * 1 2 3 19 19 H 1.09004 * 109.46914 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47367 * 300.00511 * 1 2 3 21 21 H 1.09004 * 109.47321 * 59.99248 * 3 2 1 22 22 H 1.09001 * 109.46843 * 299.99323 * 3 2 1 23 23 H 0.97001 * 119.99937 * 180.02562 * 9 8 6 24 24 H 1.00896 * 111.00296 * 151.04740 * 14 4 3 25 25 H 1.09002 * 115.55860 * 350.68531 * 15 14 4 26 26 H 1.08990 * 117.49990 * 145.01711 * 16 15 14 27 27 H 1.09004 * 117.49237 * 359.97438 * 16 15 14 28 28 H 1.08999 * 117.49685 * 0.02562 * 17 15 14 29 29 H 1.08999 * 117.52022 * 214.96909 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9785 2.1764 -0.0889 6 6 3.9723 0.3322 -1.1629 7 1 4.5229 -0.5801 -0.9871 8 6 3.6692 0.7173 -2.4517 9 7 2.9985 1.8280 -2.6655 10 14 4.2114 -0.3389 -3.8939 11 1 4.9444 -1.5276 -3.3889 12 1 3.0182 -0.7820 -4.6589 13 1 5.1018 0.4527 -4.7801 14 7 3.9769 0.5627 1.2562 15 6 4.1189 1.5665 2.3194 16 6 5.0844 1.2517 3.4637 17 6 3.5739 1.2109 3.7040 18 1 -0.3633 0.5137 -0.8901 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 1.6885 1.8465 0.8899 22 1 1.6887 1.8463 -0.8901 23 1 2.7850 2.0987 -3.5722 24 1 4.8369 0.0519 1.1239 25 1 4.0398 2.6053 1.9989 26 1 5.6405 2.0834 3.8961 27 1 5.6140 0.2996 3.4278 28 1 3.1104 0.2319 3.8263 29 1 3.1364 2.0155 4.2950 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261137095.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:11 Heat of formation + Delta-G solvation = -38.463048 kcal Electronic energy + Delta-G solvation = -11646.477393 eV Core-core repulsion = 9569.853161 eV Total energy + Delta-G solvation = -2076.624233 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.12620 -37.91133 -35.53950 -33.36155 -29.15953 -27.49433 -26.21792 -23.14295 -22.58451 -21.47446 -18.56804 -17.28271 -16.79358 -16.47189 -16.06030 -15.63687 -15.34258 -14.74665 -14.05118 -13.63808 -13.11839 -12.71459 -12.60360 -12.54135 -12.27895 -12.17712 -11.93384 -11.50010 -11.07288 -10.89558 -10.60361 -10.13318 -8.89542 -8.12261 -6.22126 1.41432 1.43812 1.55334 2.43526 3.05118 3.17842 3.38615 3.50829 4.10794 4.24305 4.44705 4.55322 4.62357 4.70077 4.82552 4.84035 4.85041 5.06427 5.10473 5.22753 5.37707 5.46411 5.71407 6.08059 6.42133 6.72439 6.86409 6.98505 7.45911 8.94211 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.037719 B = 0.013587 C = 0.011106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.161941 B = 2060.274149 C = 2520.458441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.386 6.386 3 C 0.097 3.903 4 C 0.221 3.779 5 H -0.009 1.009 6 C -0.515 4.515 7 H 0.055 0.945 8 C 0.016 3.984 9 N -0.922 5.922 10 Si 0.961 3.039 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.278 1.278 14 N -0.653 5.653 15 C -0.008 4.008 16 C -0.176 4.176 17 C -0.167 4.167 18 H 0.024 0.976 19 H 0.093 0.907 20 H 0.040 0.960 21 H 0.009 0.991 22 H 0.048 0.952 23 H 0.262 0.738 24 H 0.335 0.665 25 H 0.080 0.920 26 H 0.110 0.890 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.306 -0.653 7.338 7.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.305 6.305 3 C 0.020 3.980 4 C 0.112 3.888 5 H 0.008 0.992 6 C -0.554 4.554 7 H 0.073 0.927 8 C -0.183 4.183 9 N -0.563 5.563 10 Si 0.787 3.213 11 H -0.193 1.193 12 H -0.209 1.209 13 H -0.204 1.204 14 N -0.283 5.283 15 C -0.119 4.119 16 C -0.214 4.214 17 C -0.205 4.205 18 H 0.043 0.957 19 H 0.111 0.889 20 H 0.059 0.941 21 H 0.027 0.973 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.154 0.846 25 H 0.097 0.903 26 H 0.128 0.872 27 H 0.115 0.885 28 H 0.105 0.895 29 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.891 -0.908 7.366 7.475 hybrid contribution 0.587 0.435 -1.231 1.432 sum -0.304 -0.473 6.134 6.160 Atomic orbital electron populations 1.22747 0.82479 1.02561 0.99035 1.87950 1.18621 1.28876 1.95051 1.22338 0.95791 0.83342 0.96565 1.19031 0.90696 0.92547 0.86533 0.99157 1.21363 1.34973 1.07828 0.91210 0.92650 1.25625 0.95046 0.96265 1.01336 1.69978 1.40837 1.24017 1.21432 0.85451 0.77850 0.78929 0.79030 1.19287 1.20931 1.20417 1.60291 1.35593 1.25464 1.06960 1.22556 1.06234 0.94631 0.88480 1.23252 0.92727 1.03606 1.01807 1.23102 0.96177 1.03047 0.98197 0.95709 0.88899 0.94113 0.97336 0.93380 0.92913 0.84632 0.90257 0.87195 0.88500 0.89460 0.87709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.10 11.01 113.37 1.25 2.35 15 2 O -0.39 -19.35 10.13 -148.98 -1.51 -20.86 15 3 C 0.10 4.97 5.40 71.98 0.39 5.36 15 4 C 0.22 11.52 2.36 44.17 0.10 11.63 15 5 H -0.01 -0.50 7.57 -2.39 -0.02 -0.52 15 6 C -0.52 -28.97 8.11 25.60 0.21 -28.77 15 7 H 0.06 3.11 7.62 -2.91 -0.02 3.08 15 8 C 0.02 0.88 5.30 84.66 0.45 1.33 15 9 N -0.92 -53.37 11.37 21.45 0.24 -53.12 15 10 Si 0.96 44.57 29.54 68.60 2.03 46.60 15 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 15 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 15 13 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 14 N -0.65 -29.12 6.50 -473.31 -3.07 -32.19 15 15 C -0.01 -0.30 5.97 44.91 0.27 -0.03 15 16 C -0.18 -4.95 10.33 30.60 0.32 -4.63 15 17 C -0.17 -5.03 10.46 30.60 0.32 -4.71 15 18 H 0.02 0.95 8.14 -2.39 -0.02 0.93 15 19 H 0.09 3.05 8.14 -2.38 -0.02 3.03 15 20 H 0.04 1.39 8.14 -2.39 -0.02 1.37 15 21 H 0.01 0.41 7.99 -2.38 -0.02 0.39 15 22 H 0.05 2.70 6.22 -2.39 -0.01 2.68 15 23 H 0.26 14.36 8.31 -92.71 -0.77 13.59 15 24 H 0.33 14.57 8.18 -89.70 -0.73 13.83 15 25 H 0.08 3.06 7.60 -2.39 -0.02 3.04 15 26 H 0.11 2.57 8.14 -2.39 -0.02 2.55 15 27 H 0.10 2.64 8.14 -2.38 -0.02 2.62 15 28 H 0.09 2.77 8.14 -2.39 -0.02 2.75 15 29 H 0.10 2.69 8.14 -2.39 -0.02 2.67 15 Total: -1.00 -61.90 248.29 1.38 -60.52 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.39 Total: 16.52 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 3.30 Total: -17.47 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -2.83 Total: -85.31 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -1.51 Total: -20.86 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -61.90 1.38 -60.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137095.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.056 kcal (2) G-P(sol) polarization free energy of solvation -61.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds