Wall clock time and date at job start Mon Mar 30 2020 02:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 N 1.46903 * 109.47482 * 119.99820 * 2 1 3 13 13 C 1.46987 * 110.99882 * 300.00478 * 12 2 1 14 14 C 1.53130 * 109.24302 * 178.60311 * 13 12 2 15 15 C 1.53148 * 109.16157 * 58.03424 * 14 13 12 16 16 C 1.53131 * 109.15958 * 302.51020 * 15 14 13 17 17 O 1.43005 * 109.23515 * 57.07495 * 16 15 14 18 18 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 19 19 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 20 20 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 21 21 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 22 22 H 1.09001 * 109.51103 * 298.53203 * 13 12 2 23 23 H 1.09003 * 109.51159 * 58.67698 * 13 12 2 24 24 H 1.09002 * 109.52725 * 177.94048 * 14 13 12 25 25 H 1.09003 * 109.52675 * 298.12505 * 14 13 12 26 26 H 1.08990 * 109.52530 * 62.41642 * 15 14 13 27 27 H 1.09001 * 109.52733 * 182.61319 * 15 14 13 28 28 H 1.08996 * 109.51366 * 176.99663 * 16 15 14 29 29 H 1.08998 * 109.51793 * 297.14644 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 1.8270 -0.4197 -5.2204 10 1 3.8075 -1.1187 -4.0078 11 1 1.8282 -2.5196 -4.0082 12 7 2.0198 -0.6925 1.1995 13 6 1.5484 -0.0260 2.4218 14 6 2.0518 -0.7988 3.6442 15 6 3.5812 -0.8671 3.6009 16 6 4.0178 -1.5276 2.2902 17 8 3.4802 -0.7903 1.1891 18 1 -0.3632 -1.0277 0.0005 19 1 -0.3633 0.5137 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 0.7087 1.1613 -3.4844 22 1 1.9329 0.9935 2.4520 23 1 0.4586 -0.0050 2.4279 24 1 1.7356 -0.2880 4.5537 25 1 1.6416 -1.8086 3.6312 26 1 3.9925 0.1408 3.6556 27 1 3.9436 -1.4557 4.4437 28 1 5.1061 -1.5310 2.2291 29 1 3.6474 -2.5522 2.2577 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261145460.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:15 Heat of formation + Delta-G solvation = -4.016597 kcal Electronic energy + Delta-G solvation = -11880.399265 eV Core-core repulsion = 9805.268742 eV Total energy + Delta-G solvation = -2075.130522 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.89027 -34.51338 -32.76232 -31.86075 -28.72483 -25.41062 -25.08742 -23.27783 -20.26992 -19.30960 -16.35151 -15.70976 -15.38133 -14.44969 -14.20672 -13.71803 -13.29899 -12.87268 -12.52604 -12.03417 -11.55862 -11.00139 -10.86531 -10.65216 -10.55945 -10.40018 -10.29736 -10.14080 -9.84164 -9.25805 -8.90084 -8.36171 -7.36942 -5.95440 -3.96990 3.39423 3.41960 3.46516 3.71943 4.49668 5.18585 5.22401 5.26204 5.37565 5.54552 5.85914 5.88030 6.08019 6.13590 6.27716 6.34811 6.44656 6.58362 6.72075 6.94817 7.06816 7.33955 7.71044 7.87863 8.07600 8.23070 8.56598 9.09163 9.65846 11.12587 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.058943 B = 0.012421 C = 0.010729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.924905 B = 2253.778952 C = 2609.030986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.202 3.798 3 H 0.008 0.992 4 C -0.487 4.487 5 H 0.066 0.934 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.902 3.098 9 H -0.289 1.289 10 H -0.278 1.278 11 H -0.277 1.277 12 N -0.340 5.340 13 C 0.009 3.991 14 C -0.116 4.116 15 C -0.153 4.153 16 C 0.059 3.941 17 O -0.246 6.246 18 H 0.039 0.961 19 H 0.011 0.989 20 H 0.095 0.905 21 H 0.260 0.740 22 H 0.034 0.966 23 H 0.089 0.911 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.747 -2.438 9.359 9.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.096 3.904 3 H 0.025 0.975 4 C -0.526 4.526 5 H 0.084 0.916 6 C -0.146 4.146 7 N -0.541 5.541 8 Si 0.730 3.270 9 H -0.215 1.215 10 H -0.203 1.203 11 H -0.202 1.202 12 N -0.111 5.111 13 C -0.120 4.120 14 C -0.154 4.154 15 C -0.191 4.191 16 C -0.020 4.020 17 O -0.249 6.249 18 H 0.058 0.942 19 H 0.030 0.970 20 H 0.114 0.886 21 H 0.070 0.930 22 H 0.052 0.948 23 H 0.107 0.893 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.638 -2.712 9.040 9.580 hybrid contribution 0.532 0.444 -0.538 0.877 sum 2.170 -2.269 8.502 9.063 Atomic orbital electron populations 1.21868 0.95973 1.00204 1.00682 1.19558 0.92006 0.92950 0.85892 0.97461 1.20987 1.30164 1.12324 0.89118 0.91560 1.24934 0.95405 0.95210 0.99069 1.69869 1.37492 1.23270 1.23518 0.86489 0.79155 0.79607 0.81733 1.21453 1.20326 1.20241 1.68797 0.89174 1.50008 1.03097 1.22766 1.00892 0.96287 0.92059 1.21572 0.95412 1.01153 0.97224 1.22147 0.96772 1.01405 0.98817 1.22418 0.97396 0.95544 0.86594 1.91004 1.14867 1.75208 1.43773 0.94203 0.96968 0.88628 0.92974 0.94792 0.89310 0.92059 0.91299 0.92009 0.91714 0.89885 0.93259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.74 37.16 0.32 -2.83 15 2 C 0.20 5.41 2.33 -68.87 -0.16 5.25 15 3 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 15 4 C -0.49 -14.19 8.30 -34.44 -0.29 -14.47 15 5 H 0.07 1.97 7.63 -52.49 -0.40 1.57 15 6 C 0.05 1.54 5.30 -17.82 -0.09 1.45 15 7 N -0.90 -26.32 11.32 55.43 0.63 -25.69 15 8 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 15 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 12 N -0.34 -7.99 5.08 -107.81 -0.55 -8.53 15 13 C 0.01 0.17 5.40 -3.71 -0.02 0.15 15 14 C -0.12 -1.77 6.11 -26.59 -0.16 -1.93 15 15 C -0.15 -2.27 6.13 -26.59 -0.16 -2.43 15 16 C 0.06 1.03 7.10 37.23 0.26 1.30 15 17 O -0.25 -5.78 10.47 -13.97 -0.15 -5.92 15 18 H 0.04 0.95 8.14 -51.93 -0.42 0.53 15 19 H 0.01 0.25 6.37 -51.93 -0.33 -0.08 15 20 H 0.10 2.55 6.07 -51.93 -0.32 2.23 15 21 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 22 H 0.03 0.67 8.14 -51.93 -0.42 0.24 15 23 H 0.09 1.61 6.24 -51.93 -0.32 1.29 15 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 15 28 H 0.08 1.26 8.14 -51.93 -0.42 0.83 15 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 LS Contribution 235.05 15.07 3.54 3.54 Total: -1.00 -30.51 235.05 -6.15 -36.67 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -4.31 Total: -3.69 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -0.30 Total: -13.52 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.08 Total: -34.23 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.15 Total: -5.92 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -30.51 -6.15 -36.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261145460.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.650 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds