Wall clock time and date at job start Mon Mar 30 2020 02:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 N 1.46903 * 109.47482 * 119.99820 * 2 1 3 13 13 C 1.46987 * 110.99882 * 300.00478 * 12 2 1 14 14 C 1.53130 * 109.24302 * 178.60311 * 13 12 2 15 15 C 1.53148 * 109.16157 * 58.03424 * 14 13 12 16 16 C 1.53131 * 109.15958 * 302.51020 * 15 14 13 17 17 O 1.43005 * 109.23515 * 57.07495 * 16 15 14 18 18 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 19 19 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 20 20 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 21 21 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 22 22 H 1.09001 * 109.51103 * 298.53203 * 13 12 2 23 23 H 1.09003 * 109.51159 * 58.67698 * 13 12 2 24 24 H 1.09002 * 109.52725 * 177.94048 * 14 13 12 25 25 H 1.09003 * 109.52675 * 298.12505 * 14 13 12 26 26 H 1.08990 * 109.52530 * 62.41642 * 15 14 13 27 27 H 1.09001 * 109.52733 * 182.61319 * 15 14 13 28 28 H 1.08996 * 109.51366 * 176.99663 * 16 15 14 29 29 H 1.08998 * 109.51793 * 297.14644 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 1.8270 -0.4197 -5.2204 10 1 3.8075 -1.1187 -4.0078 11 1 1.8282 -2.5196 -4.0082 12 7 2.0198 -0.6925 1.1995 13 6 1.5484 -0.0260 2.4218 14 6 2.0518 -0.7988 3.6442 15 6 3.5812 -0.8671 3.6009 16 6 4.0178 -1.5276 2.2902 17 8 3.4802 -0.7903 1.1891 18 1 -0.3632 -1.0277 0.0005 19 1 -0.3633 0.5137 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 0.7087 1.1613 -3.4844 22 1 1.9329 0.9935 2.4520 23 1 0.4586 -0.0050 2.4279 24 1 1.7356 -0.2880 4.5537 25 1 1.6416 -1.8086 3.6312 26 1 3.9925 0.1408 3.6556 27 1 3.9436 -1.4557 4.4437 28 1 5.1061 -1.5310 2.2291 29 1 3.6474 -2.5522 2.2577 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261145460.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:15 Heat of formation + Delta-G solvation = -24.510673 kcal Electronic energy + Delta-G solvation = -11881.287955 eV Core-core repulsion = 9805.268742 eV Total energy + Delta-G solvation = -2076.019212 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.47215 -36.41733 -34.33808 -33.74875 -30.51940 -27.43305 -26.76516 -24.81103 -22.05790 -20.83622 -18.42308 -17.55373 -17.02616 -16.29934 -15.64908 -15.26588 -15.00902 -14.52855 -14.17387 -13.68096 -13.35256 -12.87841 -12.75747 -12.44032 -12.32208 -12.14845 -11.95118 -11.79736 -11.49681 -10.98601 -10.79409 -10.48673 -9.20503 -8.13283 -6.23511 1.41811 1.44781 1.52763 2.03477 2.44221 3.16233 3.85435 3.97067 4.02148 4.16295 4.45869 4.56286 4.67889 4.73008 4.87938 4.94357 4.97559 5.01271 5.05824 5.23942 5.30376 5.39925 5.67322 5.78534 6.15591 6.22637 6.61801 6.86213 7.43324 8.93477 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.058943 B = 0.012421 C = 0.010729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.924905 B = 2253.778952 C = 2609.030986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.205 3.795 3 H -0.035 1.035 4 C -0.512 4.512 5 H 0.051 0.949 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.966 3.034 9 H -0.278 1.278 10 H -0.277 1.277 11 H -0.268 1.268 12 N -0.348 5.348 13 C 0.003 3.997 14 C -0.111 4.111 15 C -0.147 4.147 16 C 0.046 3.954 17 O -0.285 6.285 18 H 0.041 0.959 19 H 0.041 0.959 20 H 0.072 0.928 21 H 0.264 0.736 22 H 0.023 0.977 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.958 -3.289 10.444 11.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.097 3.903 3 H -0.017 1.017 4 C -0.550 4.550 5 H 0.069 0.931 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.791 3.209 9 H -0.204 1.204 10 H -0.202 1.202 11 H -0.193 1.193 12 N -0.118 5.118 13 C -0.125 4.125 14 C -0.148 4.148 15 C -0.185 4.185 16 C -0.032 4.032 17 O -0.288 6.288 18 H 0.060 0.940 19 H 0.059 0.941 20 H 0.090 0.910 21 H 0.073 0.927 22 H 0.041 0.959 23 H 0.115 0.885 24 H 0.113 0.887 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.849 -3.569 10.151 10.918 hybrid contribution 0.513 0.712 -0.802 1.189 sum 2.362 -2.858 9.349 10.057 Atomic orbital electron populations 1.21659 0.94563 1.00276 1.00935 1.19385 0.93179 0.90554 0.87144 1.01715 1.21193 1.30719 1.12347 0.90790 0.93078 1.25730 0.95411 0.95891 1.01905 1.69986 1.37893 1.24128 1.24324 0.85494 0.78449 0.78820 0.78155 1.20359 1.20246 1.19349 1.68605 0.89845 1.49946 1.03392 1.22955 1.01401 0.96192 0.91972 1.21602 0.95732 1.01135 0.96346 1.22119 0.96399 1.01621 0.98348 1.22793 0.98456 0.95303 0.86604 1.90947 1.14547 1.76429 1.46921 0.94014 0.94061 0.90984 0.92712 0.95885 0.88494 0.88691 0.90806 0.92290 0.87909 0.87751 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 8.74 71.98 0.63 -5.09 15 2 C 0.20 11.22 2.33 44.17 0.10 11.32 15 3 H -0.03 -2.14 8.14 -2.38 -0.02 -2.16 15 4 C -0.51 -30.49 8.30 25.60 0.21 -30.27 15 5 H 0.05 3.12 7.63 -2.91 -0.02 3.10 15 6 C 0.01 0.50 5.30 84.66 0.45 0.95 15 7 N -0.92 -54.66 11.32 21.45 0.24 -54.42 15 8 Si 0.97 45.66 29.54 68.60 2.03 47.69 15 9 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 15 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 15 12 N -0.35 -16.40 5.08 -495.00 -2.51 -18.92 15 13 C 0.00 0.13 5.40 86.33 0.47 0.59 15 14 C -0.11 -3.04 6.11 30.69 0.19 -2.86 15 15 C -0.15 -3.89 6.13 30.69 0.19 -3.71 15 16 C 0.05 1.54 7.10 72.03 0.51 2.05 15 17 O -0.28 -13.47 10.47 -50.36 -0.53 -14.00 15 18 H 0.04 1.99 8.14 -2.39 -0.02 1.97 15 19 H 0.04 1.73 6.37 -2.39 -0.02 1.72 15 20 H 0.07 3.90 6.07 -2.39 -0.01 3.89 15 21 H 0.26 14.75 8.31 -92.70 -0.77 13.98 15 22 H 0.02 0.89 8.14 -2.39 -0.02 0.88 15 23 H 0.10 3.38 6.24 -2.39 -0.01 3.36 15 24 H 0.09 2.02 8.14 -2.39 -0.02 2.00 15 25 H 0.07 1.99 8.14 -2.39 -0.02 1.97 15 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 15 27 H 0.10 1.99 8.14 -2.39 -0.02 1.97 15 28 H 0.10 2.97 8.14 -2.39 -0.02 2.96 15 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 15 Total: -1.00 -66.64 235.05 3.08 -63.55 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: 1.11 Total: 3.10 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 2.75 Total: -27.01 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -2.27 Total: -73.33 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.53 Total: -14.00 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -66.64 3.08 -63.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261145460.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.042 kcal (2) G-P(sol) polarization free energy of solvation -66.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds