Wall clock time and date at job start Mon Mar 30 2020 02:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47901 * 111.00081 * 2 1 4 4 C 1.53994 * 107.05737 * 145.84806 * 3 2 1 5 5 C 1.54593 * 105.13840 * 358.77380 * 4 3 2 6 6 O 1.42903 * 110.72337 * 96.40573 * 5 4 3 7 7 C 1.53002 * 110.72524 * 219.50469 * 5 4 3 8 8 C 1.50705 * 109.47315 * 177.55367 * 7 5 4 9 9 H 1.07998 * 119.99555 * 0.02562 * 8 7 5 10 10 C 1.37874 * 120.00171 * 180.02562 * 8 7 5 11 11 N 1.31516 * 119.99773 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99995 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46985 * 59.99944 * 12 10 8 14 14 H 1.48497 * 109.46693 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46715 * 299.99870 * 12 10 8 16 16 C 1.49007 * 110.97301 * 117.44569 * 2 1 3 17 17 H 1.08992 * 109.47492 * 60.12044 * 1 2 3 18 18 H 1.09005 * 109.46996 * 180.12787 * 1 2 3 19 19 H 1.08999 * 109.46871 * 300.12050 * 1 2 3 20 20 H 1.09000 * 109.91349 * 26.49489 * 3 2 1 21 21 H 1.08997 * 109.91931 * 265.20053 * 3 2 1 22 22 H 1.09002 * 110.30821 * 239.86232 * 4 3 2 23 23 H 1.08997 * 110.39097 * 117.73835 * 4 3 2 24 24 H 0.96700 * 114.00311 * 182.45059 * 6 5 4 25 25 H 1.08996 * 109.47364 * 297.55380 * 7 5 4 26 26 H 1.08996 * 109.46868 * 57.55312 * 7 5 4 27 27 H 0.97006 * 119.99702 * 179.97438 * 11 10 8 28 28 H 1.08999 * 110.86310 * 81.89487 * 16 2 1 29 29 H 1.08991 * 110.68261 * 318.61978 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3659 0.8265 5 6 3.4492 -0.0930 1.3153 6 8 4.3176 -0.8286 0.4510 7 6 3.9632 -0.1310 2.7559 8 6 4.0425 -1.5614 3.2234 9 1 3.7554 -2.3633 2.5593 10 6 4.4815 -1.8465 4.4990 11 7 4.8316 -0.8700 5.3074 12 14 4.5805 -3.6196 5.0782 13 1 5.5105 -4.3756 4.2014 14 1 5.0793 -3.6564 6.4765 15 1 3.2310 -4.2363 5.0171 16 6 2.0023 -0.6413 1.2348 17 1 -0.3634 0.5119 -0.8910 18 1 -0.3633 -1.0277 0.0023 19 1 -0.3633 0.5157 0.8889 20 1 1.2758 2.0561 0.4572 21 1 2.2122 1.6967 -1.0212 22 1 3.2137 2.0428 1.6766 23 1 4.1478 1.6460 0.2037 24 1 4.4161 -1.7598 0.6923 25 1 4.9539 0.3212 2.8002 26 1 3.2812 0.4244 3.3996 27 1 5.1401 -1.0705 6.2050 28 1 2.0072 -1.7269 1.1373 29 1 1.4257 -0.3350 2.1074 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261149681.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:47 Heat of formation + Delta-G solvation = -54.445972 kcal Electronic energy + Delta-G solvation = -11789.946375 eV Core-core repulsion = 9712.629070 eV Total energy + Delta-G solvation = -2077.317304 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.82024 -35.18527 -32.84959 -31.03222 -29.07497 -26.74702 -24.98609 -22.49594 -20.66691 -19.28686 -16.44011 -15.91416 -15.17249 -14.89117 -14.27837 -13.79521 -13.07765 -12.90618 -12.39750 -12.00392 -11.51122 -11.45035 -11.15433 -11.01659 -10.92405 -10.72678 -10.52248 -10.25370 -9.79853 -9.03799 -8.63264 -8.43543 -8.00550 -6.07721 -4.11714 3.29225 3.34219 3.36019 4.38657 4.47424 5.04821 5.21839 5.29834 5.40001 5.50418 5.72604 5.77000 5.98298 6.03591 6.08686 6.34451 6.38978 6.57193 6.74902 6.78923 7.27282 7.40969 7.48832 7.65508 7.88465 8.27567 8.72299 8.93115 9.52857 11.03354 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.055966 B = 0.011420 C = 0.010744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.187672 B = 2451.277966 C = 2605.599031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.523 5.523 3 C 0.040 3.960 4 C -0.122 4.122 5 C 0.137 3.863 6 O -0.558 6.558 7 C 0.006 3.994 8 C -0.524 4.524 9 H 0.055 0.945 10 C 0.061 3.939 11 N -0.892 5.892 12 Si 0.893 3.107 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.023 3.977 17 H 0.061 0.939 18 H 0.065 0.935 19 H 0.024 0.976 20 H 0.037 0.963 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.376 0.624 25 H 0.026 0.974 26 H 0.023 0.977 27 H 0.262 0.738 28 H 0.081 0.919 29 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.872 1.889 -6.809 9.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.247 5.247 3 C -0.088 4.088 4 C -0.160 4.160 5 C 0.096 3.904 6 O -0.364 6.364 7 C -0.032 4.032 8 C -0.562 4.562 9 H 0.074 0.926 10 C -0.141 4.141 11 N -0.531 5.531 12 Si 0.720 3.280 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.202 1.202 16 C -0.104 4.104 17 H 0.080 0.920 18 H 0.083 0.917 19 H 0.042 0.958 20 H 0.056 0.944 21 H 0.090 0.910 22 H 0.094 0.906 23 H 0.093 0.907 24 H 0.225 0.775 25 H 0.045 0.955 26 H 0.041 0.959 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.614 2.231 -7.395 9.549 hybrid contribution -0.370 -1.041 1.514 1.874 sum -5.984 1.190 -5.881 8.474 Atomic orbital electron populations 1.22490 0.89092 1.01673 0.99989 1.64873 1.06930 1.14726 1.38206 1.22816 0.96017 0.89909 1.00082 1.22459 0.97191 0.96841 0.99551 1.22116 0.87228 0.89182 0.91871 1.86293 1.68244 1.26374 1.55531 1.19667 0.97129 0.97735 0.88658 1.21044 1.44577 0.92117 0.98490 0.92649 1.24994 0.95122 0.97177 0.96832 1.69952 1.44098 1.31498 1.07529 0.86646 0.78460 0.85034 0.77832 1.20070 1.21280 1.20246 1.23907 0.96880 0.99964 0.89651 0.92039 0.91661 0.95781 0.94420 0.91012 0.90637 0.90667 0.77511 0.95536 0.95903 0.92813 0.90060 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.40 60.06 0.56 0.80 15 2 N -0.52 -9.22 5.56 -238.31 -1.32 -10.54 15 3 C 0.04 0.65 6.70 -2.75 -0.02 0.64 15 4 C -0.12 -2.27 6.27 -25.38 -0.16 -2.43 15 5 C 0.14 2.94 1.02 -88.76 -0.09 2.85 15 6 O -0.56 -12.16 13.08 -35.23 -0.46 -12.62 15 7 C 0.01 0.14 4.16 -27.88 -0.12 0.03 15 8 C -0.52 -14.10 8.07 -34.44 -0.28 -14.38 15 9 H 0.06 1.41 6.64 -52.49 -0.35 1.06 15 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 11 N -0.89 -26.26 13.29 55.43 0.74 -25.53 15 12 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 15 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 14 H -0.29 -6.78 7.11 56.52 0.40 -6.37 15 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 16 C 0.02 0.46 5.16 -1.63 -0.01 0.45 15 17 H 0.06 0.77 8.14 -51.93 -0.42 0.34 15 18 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 19 H 0.02 0.33 8.01 -51.93 -0.42 -0.08 15 20 H 0.04 0.56 7.73 -51.93 -0.40 0.16 15 21 H 0.07 1.09 8.14 -51.93 -0.42 0.67 15 22 H 0.08 1.35 7.85 -51.93 -0.41 0.94 15 23 H 0.07 1.37 8.08 -51.93 -0.42 0.95 15 24 H 0.38 7.64 7.68 45.56 0.35 7.99 15 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 26 H 0.02 0.61 8.14 -51.93 -0.42 0.19 15 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 28 H 0.08 1.62 7.96 -51.93 -0.41 1.20 15 29 H 0.05 1.04 7.88 -51.93 -0.41 0.63 15 LS Contribution 239.88 15.07 3.61 3.61 Total: -1.00 -29.66 239.88 -6.37 -36.03 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -3.71 Total: 3.43 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -0.20 Total: -10.45 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: -0.59 Total: -36.07 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.46 Total: -12.62 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -29.66 -6.37 -36.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149681.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.414 kcal (2) G-P(sol) polarization free energy of solvation -29.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds