Wall clock time and date at job start Mon Mar 30 2020 02:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47901 * 111.00081 * 2 1 4 4 C 1.53994 * 107.05737 * 145.84806 * 3 2 1 5 5 C 1.54593 * 105.13840 * 358.77380 * 4 3 2 6 6 O 1.42903 * 110.72337 * 96.40573 * 5 4 3 7 7 C 1.53002 * 110.72524 * 219.50469 * 5 4 3 8 8 C 1.50705 * 109.47315 * 177.55367 * 7 5 4 9 9 H 1.07998 * 119.99555 * 0.02562 * 8 7 5 10 10 C 1.37874 * 120.00171 * 180.02562 * 8 7 5 11 11 N 1.31516 * 119.99773 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99995 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46985 * 59.99944 * 12 10 8 14 14 H 1.48497 * 109.46693 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46715 * 299.99870 * 12 10 8 16 16 C 1.49007 * 110.97301 * 117.44569 * 2 1 3 17 17 H 1.08992 * 109.47492 * 60.12044 * 1 2 3 18 18 H 1.09005 * 109.46996 * 180.12787 * 1 2 3 19 19 H 1.08999 * 109.46871 * 300.12050 * 1 2 3 20 20 H 1.09000 * 109.91349 * 26.49489 * 3 2 1 21 21 H 1.08997 * 109.91931 * 265.20053 * 3 2 1 22 22 H 1.09002 * 110.30821 * 239.86232 * 4 3 2 23 23 H 1.08997 * 110.39097 * 117.73835 * 4 3 2 24 24 H 0.96700 * 114.00311 * 182.45059 * 6 5 4 25 25 H 1.08996 * 109.47364 * 297.55380 * 7 5 4 26 26 H 1.08996 * 109.46868 * 57.55312 * 7 5 4 27 27 H 0.97006 * 119.99702 * 179.97438 * 11 10 8 28 28 H 1.08999 * 110.86310 * 81.89487 * 16 2 1 29 29 H 1.08991 * 110.68261 * 318.61978 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3659 0.8265 5 6 3.4492 -0.0930 1.3153 6 8 4.3176 -0.8286 0.4510 7 6 3.9632 -0.1310 2.7559 8 6 4.0425 -1.5614 3.2234 9 1 3.7554 -2.3633 2.5593 10 6 4.4815 -1.8465 4.4990 11 7 4.8316 -0.8700 5.3074 12 14 4.5805 -3.6196 5.0782 13 1 5.5105 -4.3756 4.2014 14 1 5.0793 -3.6564 6.4765 15 1 3.2310 -4.2363 5.0171 16 6 2.0023 -0.6413 1.2348 17 1 -0.3634 0.5119 -0.8910 18 1 -0.3633 -1.0277 0.0023 19 1 -0.3633 0.5157 0.8889 20 1 1.2758 2.0561 0.4572 21 1 2.2122 1.6967 -1.0212 22 1 3.2137 2.0428 1.6766 23 1 4.1478 1.6460 0.2037 24 1 4.4161 -1.7598 0.6923 25 1 4.9539 0.3212 2.8002 26 1 3.2812 0.4244 3.3996 27 1 5.1401 -1.0705 6.2050 28 1 2.0072 -1.7269 1.1373 29 1 1.4257 -0.3350 2.1074 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261149681.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:47 Heat of formation + Delta-G solvation = -77.448525 kcal Electronic energy + Delta-G solvation = -11790.943840 eV Core-core repulsion = 9712.629070 eV Total energy + Delta-G solvation = -2078.314770 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.36837 -36.78672 -34.92325 -32.61512 -30.80151 -28.39308 -26.55512 -24.32101 -22.10307 -20.95136 -18.49285 -17.63200 -16.80719 -16.37272 -16.03785 -15.28461 -14.58663 -14.53834 -14.05366 -13.65688 -13.37462 -13.03098 -12.85777 -12.64491 -12.41270 -12.34981 -12.14882 -12.01213 -11.68427 -10.94509 -10.58710 -10.41065 -9.35537 -8.20789 -6.32069 1.42204 1.44482 1.51850 2.40556 3.08658 3.15595 3.48802 3.78572 3.90045 4.18979 4.39059 4.54861 4.57851 4.73998 4.81145 4.84085 4.93307 4.98591 5.14363 5.21448 5.39254 5.51538 5.76005 5.87544 6.13415 6.18209 6.80969 7.04059 7.37313 8.91084 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.055966 B = 0.011420 C = 0.010744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.187672 B = 2451.277966 C = 2605.599031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.533 5.533 3 C 0.044 3.956 4 C -0.124 4.124 5 C 0.134 3.866 6 O -0.563 6.563 7 C 0.013 3.987 8 C -0.534 4.534 9 H 0.069 0.931 10 C 0.003 3.997 11 N -0.933 5.933 12 Si 0.964 3.036 13 H -0.265 1.265 14 H -0.288 1.288 15 H -0.266 1.266 16 C 0.032 3.968 17 H 0.085 0.915 18 H 0.071 0.929 19 H 0.027 0.973 20 H 0.056 0.944 21 H 0.089 0.911 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.380 0.620 25 H -0.008 1.008 26 H 0.000 1.000 27 H 0.263 0.737 28 H 0.077 0.923 29 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.935 1.141 -7.866 10.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.257 5.257 3 C -0.084 4.084 4 C -0.162 4.162 5 C 0.093 3.907 6 O -0.370 6.370 7 C -0.024 4.024 8 C -0.571 4.571 9 H 0.087 0.913 10 C -0.196 4.196 11 N -0.574 5.574 12 Si 0.789 3.211 13 H -0.190 1.190 14 H -0.213 1.213 15 H -0.191 1.191 16 C -0.095 4.095 17 H 0.103 0.897 18 H 0.090 0.910 19 H 0.045 0.955 20 H 0.075 0.925 21 H 0.108 0.892 22 H 0.093 0.907 23 H 0.095 0.905 24 H 0.229 0.771 25 H 0.010 0.990 26 H 0.019 0.981 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.690 1.483 -8.476 10.899 hybrid contribution -0.036 -0.759 1.825 1.977 sum -6.726 0.723 -6.651 9.487 Atomic orbital electron populations 1.22591 0.86860 1.02624 1.01279 1.64865 1.09104 1.15271 1.36448 1.22854 0.94973 0.89808 1.00773 1.22483 0.98856 0.94801 1.00026 1.22051 0.88065 0.91243 0.89389 1.86289 1.68589 1.26808 1.55329 1.19529 0.94806 0.96714 0.91380 1.21450 1.43828 0.93068 0.98797 0.91339 1.25938 0.94780 1.01710 0.97129 1.70097 1.45365 1.33951 1.07945 0.85511 0.78962 0.79514 0.77147 1.19019 1.21347 1.19100 1.23677 0.95515 0.99831 0.90525 0.89669 0.91020 0.95454 0.92547 0.89223 0.90670 0.90486 0.77068 0.99011 0.98134 0.92823 0.90451 0.94088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.38 9.40 127.69 1.20 1.58 15 2 N -0.53 -17.45 5.56 -907.87 -5.05 -22.50 15 3 C 0.04 1.32 6.70 86.45 0.58 1.90 15 4 C -0.12 -4.48 6.27 31.47 0.20 -4.28 15 5 C 0.13 5.69 1.02 -9.59 -0.01 5.68 15 6 O -0.56 -24.21 13.08 -148.98 -1.95 -26.16 15 7 C 0.01 0.70 4.16 29.85 0.12 0.82 15 8 C -0.53 -28.87 8.07 25.60 0.21 -28.66 15 9 H 0.07 3.44 6.64 -2.91 -0.02 3.42 15 10 C 0.00 0.14 5.46 84.65 0.46 0.60 15 11 N -0.93 -56.03 13.29 21.45 0.28 -55.75 15 12 Si 0.96 43.09 29.54 68.60 2.03 45.11 15 13 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 14 H -0.29 -12.80 7.11 99.48 0.71 -12.10 15 15 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 16 C 0.03 1.25 5.16 86.55 0.45 1.69 15 17 H 0.08 1.79 8.14 -2.39 -0.02 1.77 15 18 H 0.07 1.73 8.14 -2.38 -0.02 1.71 15 19 H 0.03 0.68 8.01 -2.39 -0.02 0.66 15 20 H 0.06 1.50 7.73 -2.39 -0.02 1.49 15 21 H 0.09 2.42 8.14 -2.39 -0.02 2.40 15 22 H 0.07 2.68 7.85 -2.39 -0.02 2.66 15 23 H 0.08 2.73 8.08 -2.39 -0.02 2.71 15 24 H 0.38 15.24 7.68 -74.06 -0.57 14.67 15 25 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 15 26 H 0.00 0.02 8.14 -2.39 -0.02 0.00 15 27 H 0.26 14.93 8.31 -92.70 -0.77 14.16 15 28 H 0.08 2.99 7.96 -2.39 -0.02 2.97 15 29 H 0.04 1.64 7.88 -2.39 -0.02 1.62 15 Total: -1.00 -62.71 239.88 -0.93 -63.64 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.55 Total: 16.32 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 3.21 Total: -20.67 kcal Atomic # 7 Polarization: -73.48 SS G_CDS: -4.76 Total: -78.25 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -1.95 Total: -26.16 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -62.71 -0.93 -63.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149681.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.813 kcal (2) G-P(sol) polarization free energy of solvation -62.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds