Wall clock time and date at job start Mon Mar 30 2020 02:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47905 * 111.00050 * 2 1 4 4 C 1.53991 * 107.22505 * 214.25344 * 3 2 1 5 5 C 1.54594 * 105.14285 * 1.12969 * 4 3 2 6 6 H 1.08999 * 110.72080 * 263.59761 * 5 4 3 7 7 C 1.53000 * 110.72505 * 140.31365 * 5 4 3 8 8 H 1.09000 * 109.46955 * 60.00069 * 7 5 4 9 9 O 1.42905 * 109.47230 * 299.99816 * 7 5 4 10 10 C 1.50698 * 109.47009 * 180.02562 * 7 5 4 11 11 H 1.08004 * 120.00390 * 359.97438 * 10 7 5 12 12 C 1.37883 * 120.00133 * 180.02562 * 10 7 5 13 13 N 1.31514 * 119.99529 * 359.97438 * 12 10 7 14 14 Si 1.86796 * 119.99832 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47427 * 59.99864 * 14 12 10 16 16 H 1.48511 * 109.46740 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47164 * 299.99219 * 14 12 10 18 18 C 1.48813 * 111.18681 * 242.66666 * 2 1 3 19 19 H 1.09003 * 109.47065 * 59.87544 * 1 2 3 20 20 H 1.08999 * 109.47271 * 179.87278 * 1 2 3 21 21 H 1.09003 * 109.47401 * 299.87547 * 1 2 3 22 22 H 1.09002 * 109.91668 * 94.80258 * 3 2 1 23 23 H 1.09002 * 109.91761 * 333.70433 * 3 2 1 24 24 H 1.09005 * 110.30467 * 120.04331 * 4 3 2 25 25 H 1.09001 * 110.30885 * 242.11043 * 4 3 2 26 26 H 0.96696 * 113.99804 * 300.00519 * 9 7 5 27 27 H 0.96998 * 119.99557 * 180.02562 * 13 12 10 28 28 H 1.08998 * 110.51915 * 41.07024 * 18 2 1 29 29 H 1.09004 * 110.69711 * 278.02347 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2974 1.3708 -0.8279 5 6 3.4527 -0.0871 -1.3180 6 1 4.1176 -0.6465 -0.6599 7 6 3.9610 -0.1221 -2.7606 8 1 4.9304 0.3731 -2.8164 9 8 3.0313 0.5536 -3.6099 10 6 4.1013 -1.5540 -3.2092 11 1 3.8531 -2.3586 -2.5328 12 6 4.5474 -1.8369 -4.4828 13 7 4.8501 -0.8572 -5.3062 14 14 4.7206 -3.6118 -5.0389 15 1 3.3992 -4.2853 -4.9638 16 1 5.2141 -3.6458 -6.4392 17 1 5.6857 -4.3152 -4.1562 18 6 2.0068 -0.6371 -1.2326 19 1 -0.3633 0.5158 -0.8889 20 1 -0.3634 -1.0276 -0.0023 21 1 -0.3634 0.5119 0.8911 22 1 2.2122 1.6967 1.0212 23 1 1.2744 2.0567 -0.4540 24 1 3.2096 2.0482 -1.6774 25 1 4.1456 1.6545 -0.2048 26 1 2.1453 0.1662 -3.6100 27 1 5.1636 -1.0562 -6.2023 28 1 1.4273 -0.3326 -2.1041 29 1 2.0133 -1.7227 -1.1338 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261278156.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:29 Heat of formation + Delta-G solvation = -52.142734 kcal Electronic energy + Delta-G solvation = -11833.647251 eV Core-core repulsion = 9756.429823 eV Total energy + Delta-G solvation = -2077.217428 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.64420 -35.33717 -32.11160 -31.45527 -28.73646 -26.49895 -25.01726 -22.32153 -20.49907 -19.07306 -16.79540 -15.69566 -15.21161 -14.58824 -14.04047 -13.80379 -13.32761 -12.81411 -12.71255 -12.03836 -11.44486 -11.20342 -11.04691 -10.87307 -10.82695 -10.64406 -10.37702 -9.91803 -9.85611 -8.91276 -8.52771 -8.13553 -8.02519 -5.98153 -4.15655 3.30577 3.35806 3.37904 4.40219 4.48715 5.25518 5.27521 5.31039 5.52558 5.70978 5.73727 5.91390 6.02603 6.05637 6.15590 6.39251 6.47918 6.52228 6.71861 6.80995 7.04791 7.33888 7.43827 7.75165 7.87598 8.22090 8.86950 9.37814 9.60639 11.06148 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.059705 B = 0.011687 C = 0.010686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.859893 B = 2395.185618 C = 2619.588257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.530 5.530 3 C 0.038 3.962 4 C -0.129 4.129 5 C -0.112 4.112 6 H 0.073 0.927 7 C 0.236 3.764 8 H 0.058 0.942 9 O -0.564 6.564 10 C -0.568 4.568 11 H 0.056 0.944 12 C 0.078 3.922 13 N -0.862 5.862 14 Si 0.888 3.112 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.050 3.950 19 H 0.025 0.975 20 H 0.064 0.936 21 H 0.060 0.940 22 H 0.067 0.933 23 H 0.037 0.963 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.341 0.659 27 H 0.260 0.740 28 H 0.045 0.955 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 1.824 7.299 9.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.254 5.254 3 C -0.090 4.090 4 C -0.167 4.167 5 C -0.131 4.131 6 H 0.092 0.908 7 C 0.178 3.822 8 H 0.076 0.924 9 O -0.368 6.368 10 C -0.606 4.606 11 H 0.075 0.925 12 C -0.128 4.128 13 N -0.498 5.498 14 Si 0.715 3.285 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.077 4.077 19 H 0.043 0.957 20 H 0.083 0.917 21 H 0.079 0.921 22 H 0.085 0.915 23 H 0.055 0.945 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.186 0.814 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.075 1.984 7.475 9.250 hybrid contribution -0.660 -0.964 -0.909 1.480 sum -5.734 1.020 6.567 8.778 Atomic orbital electron populations 1.22463 0.88973 1.01636 1.00054 1.64826 1.07157 1.15000 1.38443 1.22816 0.96636 0.89767 0.99766 1.22468 0.95996 0.99183 0.99086 1.22856 0.95620 0.93475 1.01195 0.90821 1.19322 0.88741 0.92174 0.81980 0.92444 1.86568 1.22322 1.58123 1.69814 1.21653 1.47360 0.92670 0.98939 0.92535 1.25063 0.94149 0.96793 0.96798 1.70067 1.42131 1.31021 1.06577 0.86752 0.78561 0.85462 0.77681 1.20200 1.21279 1.20139 1.23195 0.95715 0.99406 0.89368 0.95659 0.91670 0.92105 0.91464 0.94490 0.90736 0.92198 0.81393 0.93001 0.93692 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.41 60.06 0.57 0.81 15 2 N -0.53 -8.98 5.56 -238.47 -1.33 -10.30 15 3 C 0.04 0.61 6.69 -2.75 -0.02 0.59 15 4 C -0.13 -2.34 6.41 -25.38 -0.16 -2.50 15 5 C -0.11 -2.32 2.90 -88.76 -0.26 -2.58 15 6 H 0.07 1.56 8.14 -51.93 -0.42 1.14 15 7 C 0.24 5.93 2.64 -27.88 -0.07 5.86 15 8 H 0.06 1.60 8.14 -51.93 -0.42 1.18 15 9 O -0.56 -14.44 11.89 -35.23 -0.42 -14.86 15 10 C -0.57 -15.46 8.33 -34.44 -0.29 -15.75 15 11 H 0.06 1.50 7.68 -52.48 -0.40 1.10 15 12 C 0.08 2.18 5.40 -17.82 -0.10 2.08 15 13 N -0.86 -25.55 12.84 55.43 0.71 -24.84 15 14 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 15 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 16 H -0.29 -6.83 7.11 56.52 0.40 -6.42 15 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 18 C 0.05 0.95 5.46 -1.74 -0.01 0.94 15 19 H 0.02 0.35 8.01 -51.93 -0.42 -0.07 15 20 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 23 H 0.04 0.56 7.73 -51.93 -0.40 0.16 15 24 H 0.07 1.43 7.29 -51.93 -0.38 1.05 15 25 H 0.06 1.00 8.14 -51.93 -0.42 0.57 15 26 H 0.34 7.93 6.87 45.56 0.31 8.24 15 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 28 H 0.04 0.87 5.81 -51.93 -0.30 0.56 15 29 H 0.08 1.53 8.13 -51.93 -0.42 1.11 15 LS Contribution 237.08 15.07 3.57 3.57 Total: -1.00 -29.56 237.08 -6.50 -36.06 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -3.68 Total: 4.72 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -0.34 Total: -10.54 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: -0.61 Total: -35.14 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.42 Total: -14.86 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -29.56 -6.50 -36.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261278156.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.081 kcal (2) G-P(sol) polarization free energy of solvation -29.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds