Wall clock time and date at job start Mon Mar 30 2020 02:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.46988 * 2 1 4 4 C 1.42900 * 114.00026 * 175.28761 * 3 2 1 5 5 C 1.50702 * 112.93726 * 295.89937 * 4 3 2 6 6 H 1.08000 * 120.00052 * 113.49828 * 5 4 3 7 7 C 1.37871 * 120.00058 * 293.49407 * 5 4 3 8 8 N 1.31520 * 120.00054 * 355.01919 * 7 5 4 9 9 Si 1.86799 * 120.00195 * 175.02445 * 7 5 4 10 10 H 1.48503 * 109.47416 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47014 * 299.99889 * 9 7 5 12 12 H 1.48501 * 109.47218 * 59.99775 * 9 7 5 13 13 C 1.53937 * 113.82948 * 67.55815 * 4 3 2 14 14 N 1.47959 * 86.17753 * 90.65063 * 13 4 3 15 15 C 1.46899 * 110.99841 * 137.58585 * 14 13 4 16 16 C 1.47955 * 90.76421 * 24.69168 * 14 13 4 17 17 H 1.09009 * 109.47180 * 179.97438 * 1 2 3 18 18 H 1.09000 * 109.47297 * 299.99836 * 1 2 3 19 19 H 1.08998 * 109.47140 * 59.99978 * 1 2 3 20 20 H 1.09000 * 109.47297 * 240.00164 * 2 1 3 21 21 H 1.08998 * 109.47140 * 120.00022 * 2 1 3 22 22 H 0.97002 * 119.99728 * 180.02562 * 8 7 5 23 23 H 1.08996 * 113.75576 * 204.97025 * 13 4 3 24 24 H 1.08995 * 113.75576 * 336.33176 * 13 4 3 25 25 H 1.09007 * 109.47026 * 320.63522 * 15 14 13 26 26 H 1.08998 * 109.47912 * 80.63245 * 15 14 13 27 27 H 1.09000 * 109.47499 * 200.64268 * 15 14 13 28 28 H 1.09010 * 113.75639 * 220.98951 * 16 14 13 29 29 H 1.09001 * 113.86313 * 89.64292 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4267 1.4616 0.1072 5 6 3.9609 0.9388 1.4158 6 1 4.5878 0.0595 1.4305 7 6 3.6493 1.5829 2.5943 8 7 2.9684 2.7079 2.5687 9 14 4.1943 0.8581 4.2274 10 1 3.7381 1.7354 5.3353 11 1 3.6030 -0.4943 4.3906 12 1 5.6757 0.7572 4.2544 13 6 4.1874 0.9401 -1.1252 14 7 4.0909 2.3216 -1.6462 15 6 5.3572 2.7422 -2.2605 16 6 3.9666 2.8527 -0.2708 17 1 -0.3634 -1.0277 -0.0005 18 1 -0.3634 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 1.8934 -0.5138 -0.8900 21 1 1.8933 -0.5138 0.8900 22 1 2.7496 3.1613 3.3979 23 1 5.2075 0.6223 -0.9095 24 1 3.6280 0.2101 -1.7101 25 1 6.1911 2.3699 -1.6653 26 1 5.4230 2.3381 -3.2707 27 1 5.3975 3.8307 -2.3012 28 1 3.2306 3.6509 -0.1731 29 1 4.9212 3.0951 0.1962 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261321618.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:34 Heat of formation + Delta-G solvation = -11.447930 kcal Electronic energy + Delta-G solvation = -11988.868355 eV Core-core repulsion = 9913.415586 eV Total energy + Delta-G solvation = -2075.452769 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.96395 -35.39111 -32.53165 -30.26843 -28.50457 -25.63413 -25.04140 -22.02736 -21.46084 -18.57971 -16.94605 -15.10008 -14.90850 -14.32541 -13.99228 -13.77451 -13.54169 -12.75552 -12.04059 -11.82838 -11.56307 -11.28547 -11.00692 -10.94258 -10.66441 -10.55248 -10.29043 -10.02414 -9.58996 -8.81263 -8.56474 -8.09946 -7.61075 -6.06045 -4.21935 3.26523 3.32352 3.34149 4.35001 4.89899 5.12270 5.32560 5.73156 5.94573 5.97948 6.08411 6.14346 6.27023 6.31909 6.38260 6.42195 6.57392 6.63512 6.88717 6.97753 7.13364 7.27881 7.41666 7.75106 8.06573 8.10546 8.78619 9.01361 9.51179 10.98525 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.030737 B = 0.018390 C = 0.013318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.742456 B = 1522.228404 C = 2101.867179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.071 3.929 3 O -0.360 6.360 4 C 0.230 3.770 5 C -0.556 4.556 6 H 0.059 0.941 7 C 0.085 3.915 8 N -0.858 5.858 9 Si 0.887 3.113 10 H -0.285 1.285 11 H -0.275 1.275 12 H -0.276 1.276 13 C -0.030 4.030 14 N -0.493 5.493 15 C -0.008 4.008 16 C 0.046 3.954 17 H 0.053 0.947 18 H 0.057 0.943 19 H 0.051 0.949 20 H 0.022 0.978 21 H 0.048 0.952 22 H 0.263 0.737 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.027 0.973 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.774 -2.647 -3.770 4.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.007 4.007 3 O -0.279 6.279 4 C 0.191 3.809 5 C -0.594 4.594 6 H 0.077 0.923 7 C -0.122 4.122 8 N -0.493 5.493 9 Si 0.714 3.286 10 H -0.211 1.211 11 H -0.201 1.201 12 H -0.202 1.202 13 C -0.160 4.160 14 N -0.216 5.216 15 C -0.157 4.157 16 C -0.082 4.082 17 H 0.072 0.928 18 H 0.076 0.924 19 H 0.070 0.930 20 H 0.040 0.960 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.086 -2.140 -4.192 4.707 hybrid contribution 1.243 -0.735 1.457 2.051 sum 1.328 -2.875 -2.735 4.184 Atomic orbital electron populations 1.21702 0.96065 1.00350 1.02123 1.21939 0.93058 0.86851 0.98830 1.87842 1.22671 1.23473 1.93868 1.20177 0.78796 0.91820 0.90075 1.21251 1.33012 1.13761 0.91343 0.92307 1.24989 0.93940 0.94301 0.98930 1.70016 1.36721 1.15066 1.27489 0.86755 0.79046 0.79380 0.83381 1.21090 1.20064 1.20175 1.24684 1.00402 0.91888 0.98983 1.68508 1.29084 1.05288 1.18677 1.22791 0.92787 1.00595 0.99566 1.23744 0.99702 0.99497 0.85270 0.92761 0.92377 0.93001 0.95964 0.93339 0.92720 0.91986 0.91495 0.95404 0.92614 0.92369 0.90180 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 10.28 37.16 0.38 -2.28 15 2 C 0.07 1.55 6.30 37.16 0.23 1.79 15 3 O -0.36 -9.41 10.28 -35.23 -0.36 -9.77 15 4 C 0.23 5.89 0.61 -90.84 -0.06 5.84 15 5 C -0.56 -15.03 7.50 -34.44 -0.26 -15.29 15 6 H 0.06 1.56 7.82 -52.49 -0.41 1.15 15 7 C 0.09 2.32 5.41 -17.82 -0.10 2.22 15 8 N -0.86 -24.36 12.70 55.43 0.70 -23.66 15 9 Si 0.89 20.78 29.54 -169.99 -5.02 15.75 15 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 11 H -0.28 -6.40 7.11 56.52 0.40 -5.99 15 12 H -0.28 -6.38 7.11 56.52 0.40 -5.97 15 13 C -0.03 -0.68 7.10 -2.77 -0.02 -0.70 15 14 N -0.49 -10.90 6.56 -246.59 -1.62 -12.52 15 15 C -0.01 -0.14 9.65 60.06 0.58 0.44 15 16 C 0.05 1.13 6.63 -2.77 -0.02 1.11 15 17 H 0.05 0.82 8.14 -51.92 -0.42 0.40 15 18 H 0.06 1.11 8.14 -51.93 -0.42 0.69 15 19 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 20 H 0.02 0.46 6.98 -51.93 -0.36 0.09 15 21 H 0.05 1.13 7.33 -51.93 -0.38 0.75 15 22 H 0.26 7.12 8.31 -40.82 -0.34 6.78 15 23 H 0.06 1.34 7.57 -51.93 -0.39 0.94 15 24 H 0.07 1.43 6.96 -51.93 -0.36 1.07 15 25 H 0.03 0.49 7.62 -51.92 -0.40 0.09 15 26 H 0.06 0.90 8.14 -51.93 -0.42 0.47 15 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 28 H 0.08 2.09 8.14 -51.92 -0.42 1.67 15 29 H 0.07 1.61 7.88 -51.93 -0.41 1.20 15 LS Contribution 243.21 15.07 3.67 3.67 Total: -1.00 -29.00 243.21 -6.27 -35.27 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -4.38 Total: -1.86 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 0.75 Total: -6.88 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: -0.91 Total: -36.18 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -0.36 Total: -9.77 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.00 -6.27 -35.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261321618.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.821 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds