Wall clock time and date at job start Mon Mar 30 2020 02:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.46988 * 2 1 4 4 C 1.42900 * 114.00026 * 175.28761 * 3 2 1 5 5 C 1.50702 * 112.93726 * 295.89937 * 4 3 2 6 6 H 1.08000 * 120.00052 * 113.49828 * 5 4 3 7 7 C 1.37871 * 120.00058 * 293.49407 * 5 4 3 8 8 N 1.31520 * 120.00054 * 355.01919 * 7 5 4 9 9 Si 1.86799 * 120.00195 * 175.02445 * 7 5 4 10 10 H 1.48503 * 109.47416 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47014 * 299.99889 * 9 7 5 12 12 H 1.48501 * 109.47218 * 59.99775 * 9 7 5 13 13 C 1.53937 * 113.82948 * 67.55815 * 4 3 2 14 14 N 1.47959 * 86.17753 * 90.65063 * 13 4 3 15 15 C 1.46899 * 110.99841 * 137.58585 * 14 13 4 16 16 C 1.47955 * 90.76421 * 24.69168 * 14 13 4 17 17 H 1.09009 * 109.47180 * 179.97438 * 1 2 3 18 18 H 1.09000 * 109.47297 * 299.99836 * 1 2 3 19 19 H 1.08998 * 109.47140 * 59.99978 * 1 2 3 20 20 H 1.09000 * 109.47297 * 240.00164 * 2 1 3 21 21 H 1.08998 * 109.47140 * 120.00022 * 2 1 3 22 22 H 0.97002 * 119.99728 * 180.02562 * 8 7 5 23 23 H 1.08996 * 113.75576 * 204.97025 * 13 4 3 24 24 H 1.08995 * 113.75576 * 336.33176 * 13 4 3 25 25 H 1.09007 * 109.47026 * 320.63522 * 15 14 13 26 26 H 1.08998 * 109.47912 * 80.63245 * 15 14 13 27 27 H 1.09000 * 109.47499 * 200.64268 * 15 14 13 28 28 H 1.09010 * 113.75639 * 220.98951 * 16 14 13 29 29 H 1.09001 * 113.86313 * 89.64292 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4267 1.4616 0.1072 5 6 3.9609 0.9388 1.4158 6 1 4.5878 0.0595 1.4305 7 6 3.6493 1.5829 2.5943 8 7 2.9684 2.7079 2.5687 9 14 4.1943 0.8581 4.2274 10 1 3.7381 1.7354 5.3353 11 1 3.6030 -0.4943 4.3906 12 1 5.6757 0.7572 4.2544 13 6 4.1874 0.9401 -1.1252 14 7 4.0909 2.3216 -1.6462 15 6 5.3572 2.7422 -2.2605 16 6 3.9666 2.8527 -0.2708 17 1 -0.3634 -1.0277 -0.0005 18 1 -0.3634 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 1.8934 -0.5138 -0.8900 21 1 1.8933 -0.5138 0.8900 22 1 2.7496 3.1613 3.3979 23 1 5.2075 0.6223 -0.9095 24 1 3.6280 0.2101 -1.7101 25 1 6.1911 2.3699 -1.6653 26 1 5.4230 2.3381 -3.2707 27 1 5.3975 3.8307 -2.3012 28 1 3.2306 3.6509 -0.1731 29 1 4.9212 3.0951 0.1962 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261321618.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:34 Heat of formation + Delta-G solvation = -32.984066 kcal Electronic energy + Delta-G solvation = -11989.802232 eV Core-core repulsion = 9913.415586 eV Total energy + Delta-G solvation = -2076.386646 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.79049 -37.21240 -34.56539 -31.93739 -30.22369 -27.57486 -26.88846 -23.75887 -23.18019 -20.47337 -18.92084 -16.93920 -16.87534 -16.11988 -15.79446 -15.45212 -15.25047 -14.48871 -13.84199 -13.42768 -13.26653 -12.98318 -12.81694 -12.78105 -12.46534 -12.31217 -12.00828 -11.80654 -11.39270 -10.80059 -10.53814 -9.92523 -9.46930 -8.11071 -6.33828 1.41267 1.42595 1.50072 2.39814 3.04124 3.23369 3.49355 4.16386 4.30264 4.36851 4.39997 4.58836 4.64941 4.71612 4.75250 4.79781 4.94086 4.97364 5.22392 5.26902 5.37089 5.45320 5.56793 5.66031 6.08205 6.34021 6.72627 7.10710 7.43860 8.92619 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.030737 B = 0.018390 C = 0.013318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.742456 B = 1522.228404 C = 2101.867179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.064 3.936 3 O -0.387 6.387 4 C 0.211 3.789 5 C -0.568 4.568 6 H 0.057 0.943 7 C 0.039 3.961 8 N -0.890 5.890 9 Si 0.949 3.051 10 H -0.284 1.284 11 H -0.271 1.271 12 H -0.269 1.269 13 C -0.018 4.018 14 N -0.498 5.498 15 C -0.009 4.009 16 C 0.051 3.949 17 H 0.090 0.910 18 H 0.043 0.957 19 H 0.058 0.942 20 H 0.038 0.962 21 H 0.029 0.971 22 H 0.262 0.738 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.031 0.969 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.158 -3.633 -4.245 5.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.013 4.013 3 O -0.306 6.306 4 C 0.172 3.828 5 C -0.606 4.606 6 H 0.075 0.925 7 C -0.165 4.165 8 N -0.526 5.526 9 Si 0.774 3.226 10 H -0.209 1.209 11 H -0.196 1.196 12 H -0.193 1.193 13 C -0.147 4.147 14 N -0.220 5.220 15 C -0.158 4.158 16 C -0.078 4.078 17 H 0.109 0.891 18 H 0.062 0.938 19 H 0.077 0.923 20 H 0.056 0.944 21 H 0.048 0.952 22 H 0.071 0.929 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.050 0.950 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.478 -3.138 -4.680 5.655 hybrid contribution 1.123 -0.445 1.542 1.959 sum 1.602 -3.582 -3.139 5.025 Atomic orbital electron populations 1.21682 0.93351 1.02640 1.01735 1.22169 0.95320 0.85194 0.98606 1.87795 1.22992 1.25855 1.94004 1.20360 0.79040 0.92610 0.90832 1.21543 1.32908 1.13571 0.92552 0.92475 1.25716 0.94032 0.94536 1.02188 1.70142 1.38064 1.16275 1.28161 0.85772 0.78912 0.78581 0.79318 1.20905 1.19650 1.19349 1.24561 1.00356 0.92255 0.97525 1.68415 1.31715 1.04863 1.17056 1.22873 0.90849 1.01573 1.00466 1.23533 0.98578 0.98553 0.87156 0.89129 0.93825 0.92277 0.94378 0.95221 0.92850 0.91234 0.90458 0.94986 0.90109 0.91233 0.92692 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 10.28 71.98 0.74 -4.06 15 2 C 0.06 2.76 6.30 71.98 0.45 3.21 15 3 O -0.39 -20.28 10.28 -148.98 -1.53 -21.81 15 4 C 0.21 10.76 0.61 -10.89 -0.01 10.75 15 5 C -0.57 -30.71 7.50 25.60 0.19 -30.52 15 6 H 0.06 3.02 7.82 -2.91 -0.02 2.99 15 7 C 0.04 2.12 5.41 84.65 0.46 2.58 15 8 N -0.89 -51.27 12.70 21.45 0.27 -51.00 15 9 Si 0.95 42.56 29.54 68.60 2.03 44.59 15 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 15 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 12 H -0.27 -11.61 7.11 99.48 0.71 -10.91 15 13 C -0.02 -0.78 7.10 86.41 0.61 -0.16 15 14 N -0.50 -21.39 6.56 -937.28 -6.14 -27.53 15 15 C -0.01 -0.29 9.65 127.69 1.23 0.94 15 16 C 0.05 2.50 6.63 86.41 0.57 3.07 15 17 H 0.09 2.49 8.14 -2.38 -0.02 2.47 15 18 H 0.04 1.63 8.14 -2.39 -0.02 1.61 15 19 H 0.06 1.97 8.14 -2.39 -0.02 1.95 15 20 H 0.04 1.50 6.98 -2.39 -0.02 1.49 15 21 H 0.03 1.37 7.33 -2.39 -0.02 1.35 15 22 H 0.26 14.41 8.31 -92.71 -0.77 13.64 15 23 H 0.07 2.87 7.57 -2.39 -0.02 2.85 15 24 H 0.08 3.16 6.96 -2.39 -0.02 3.14 15 25 H 0.03 1.05 7.62 -2.38 -0.02 1.04 15 26 H 0.08 2.34 8.14 -2.39 -0.02 2.32 15 27 H 0.07 2.18 8.14 -2.39 -0.02 2.16 15 28 H 0.05 2.95 8.14 -2.38 -0.02 2.93 15 29 H 0.06 2.86 7.88 -2.39 -0.02 2.84 15 Total: -1.00 -61.08 243.21 -0.02 -61.10 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 1.11 Total: 8.85 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: 4.26 Total: -14.19 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -5.87 Total: -78.54 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -1.53 Total: -21.81 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -61.08 -0.02 -61.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261321618.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.113 kcal (2) G-P(sol) polarization free energy of solvation -61.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds