Wall clock time and date at job start Mon Mar 30 2020 02:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99607 * 2 1 4 4 H 1.09005 * 109.47070 * 25.25809 * 3 2 1 5 5 C 1.50698 * 109.47082 * 265.25737 * 3 2 1 6 6 H 1.07993 * 120.00105 * 304.80540 * 5 3 2 7 7 C 1.37879 * 120.00005 * 124.80199 * 5 3 2 8 8 N 1.31514 * 120.00015 * 184.71673 * 7 5 3 9 9 Si 1.86798 * 119.99904 * 4.72480 * 7 5 3 10 10 H 1.48500 * 109.47555 * 84.57436 * 9 7 5 11 11 H 1.48497 * 109.47084 * 324.57634 * 9 7 5 12 12 H 1.48500 * 109.47024 * 204.57298 * 9 7 5 13 13 C 1.52995 * 109.47072 * 145.25421 * 3 2 1 14 14 H 1.09006 * 110.64124 * 63.15372 * 13 3 2 15 15 C 1.54592 * 110.72740 * 300.00275 * 13 3 2 16 16 C 1.53990 * 105.14043 * 219.68240 * 15 13 3 17 17 N 1.47900 * 107.05957 * 358.77574 * 16 15 13 18 18 C 1.48538 * 105.82157 * 25.32535 * 17 16 15 19 19 H 1.08996 * 109.47805 * 304.97921 * 1 2 3 20 20 H 1.08998 * 109.47487 * 64.98649 * 1 2 3 21 21 H 1.09007 * 109.46696 * 184.97688 * 1 2 3 22 22 H 0.97001 * 120.00004 * 179.97438 * 8 7 5 23 23 H 1.09002 * 110.30558 * 338.59753 * 15 13 3 24 24 H 1.09001 * 110.30709 * 100.76939 * 15 13 3 25 25 H 1.08998 * 109.91723 * 118.12471 * 16 15 13 26 26 H 1.09004 * 109.92353 * 239.22280 * 16 15 13 27 27 H 1.00895 * 111.00310 * 145.84410 * 17 16 15 28 28 H 1.08993 * 110.66897 * 202.36199 * 18 17 16 29 29 H 1.09000 * 110.66055 * 79.22826 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3088 2.0155 0.4385 5 6 2.3217 1.7167 -1.4159 6 1 2.9413 1.0870 -2.0371 7 6 1.8157 2.8968 -1.9184 8 7 2.0097 3.2108 -3.1806 9 14 0.8549 4.0496 -0.8061 10 1 1.7991 4.9248 -0.0660 11 1 0.0567 3.2536 0.1606 12 1 -0.0549 4.8868 -1.6285 13 6 3.3003 1.2894 0.8221 14 1 4.0369 0.6263 0.3683 15 6 3.0135 0.8706 2.2823 16 6 3.9130 1.7756 3.1444 17 7 4.6837 2.6316 2.2166 18 6 3.8691 2.7222 0.9779 19 1 -0.3634 0.5891 0.8420 20 1 -0.3634 0.4345 -0.9312 21 1 -0.3633 -1.0239 0.0892 22 1 1.6534 4.0409 -3.5342 23 1 1.9642 1.0388 2.5249 24 1 3.2746 -0.1768 2.4337 25 1 3.2990 2.3953 3.7979 26 1 4.5910 1.1653 3.7411 27 1 4.8407 3.5457 2.6139 28 1 4.4948 2.9826 0.1242 29 1 3.0626 3.4451 1.1000 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261334005.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:04 Heat of formation + Delta-G solvation = -47.269333 kcal Electronic energy + Delta-G solvation = -11975.419475 eV Core-core repulsion = 9898.413373 eV Total energy + Delta-G solvation = -2077.006102 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.32212 -36.21453 -32.68501 -30.63863 -28.81058 -26.42338 -25.55264 -21.97981 -20.71231 -19.31121 -17.25486 -15.95998 -15.50393 -15.00236 -14.27359 -13.71646 -13.35914 -13.15699 -12.53440 -12.16606 -11.76676 -11.51648 -11.30924 -11.03475 -10.90753 -10.41581 -10.22472 -9.94939 -9.69270 -9.14309 -8.74651 -8.20094 -8.07242 -6.19422 -4.21384 3.12713 3.19472 3.23601 4.25663 4.65565 4.84215 5.23400 5.30122 5.47622 5.59749 5.89609 6.03440 6.08427 6.18847 6.28664 6.39095 6.43143 6.46331 6.48756 6.78467 6.88140 7.13905 7.29662 7.57390 7.71683 8.24334 8.55928 8.94554 9.43931 10.93961 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.034384 B = 0.018508 C = 0.014788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.139356 B = 1512.465839 C = 1892.960600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.398 6.398 3 C 0.180 3.820 4 H 0.028 0.972 5 C -0.524 4.524 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.889 5.889 9 Si 0.865 3.135 10 H -0.270 1.270 11 H -0.266 1.266 12 H -0.286 1.286 13 C -0.072 4.072 14 H 0.080 0.920 15 C -0.128 4.128 16 C 0.038 3.962 17 N -0.677 5.677 18 C 0.055 3.945 19 H 0.020 0.980 20 H 0.037 0.963 21 H 0.065 0.935 22 H 0.266 0.734 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.030 0.970 26 H 0.070 0.930 27 H 0.329 0.671 28 H 0.090 0.910 29 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.656 -0.556 10.202 10.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.318 6.318 3 C 0.123 3.877 4 H 0.045 0.955 5 C -0.562 4.562 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.693 3.307 10 H -0.196 1.196 11 H -0.192 1.192 12 H -0.212 1.212 13 C -0.091 4.091 14 H 0.099 0.901 15 C -0.166 4.166 16 C -0.091 4.091 17 N -0.305 5.305 18 C -0.073 4.073 19 H 0.038 0.962 20 H 0.056 0.944 21 H 0.083 0.917 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.049 0.951 26 H 0.088 0.912 27 H 0.143 0.857 28 H 0.108 0.892 29 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -0.095 -1.090 9.832 9.893 hybrid contribution -1.556 1.621 0.735 2.364 sum -1.651 0.531 10.567 10.708 Atomic orbital electron populations 1.22430 0.83757 1.00029 0.99102 1.87789 1.17370 1.31498 1.95129 1.20373 0.90019 0.81777 0.95515 0.95479 1.21402 1.32007 1.06149 0.96669 0.90226 1.25071 0.95204 0.97647 0.94604 1.69900 1.45754 1.24269 1.12838 0.87118 0.80903 0.81519 0.81199 1.19606 1.19197 1.21171 1.22095 0.98779 0.95461 0.92776 0.90125 1.22482 0.98481 0.99405 0.96259 1.22658 0.95326 0.96021 0.95094 1.63098 1.45227 1.16514 1.05661 1.22944 0.95286 0.96803 0.92303 0.96189 0.94440 0.91668 0.92435 0.92361 0.91434 0.95109 0.91166 0.85669 0.89180 0.94831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.88 10.87 101.05 1.10 1.98 15 2 O -0.40 -9.42 10.01 -35.23 -0.35 -9.77 15 3 C 0.18 4.34 1.47 -27.89 -0.04 4.30 15 4 H 0.03 0.67 3.95 -51.93 -0.21 0.46 15 5 C -0.52 -14.74 8.79 -34.44 -0.30 -15.04 15 6 H 0.08 2.49 8.06 -52.49 -0.42 2.06 15 7 C 0.08 2.19 5.47 -17.82 -0.10 2.10 15 8 N -0.89 -26.67 13.96 55.43 0.77 -25.89 15 9 Si 0.86 20.86 25.94 -169.99 -4.41 16.45 15 10 H -0.27 -6.26 6.85 56.52 0.39 -5.87 15 11 H -0.27 -6.19 6.21 56.52 0.35 -5.84 15 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 13 C -0.07 -1.53 2.81 -88.76 -0.25 -1.78 15 14 H 0.08 1.82 8.14 -51.93 -0.42 1.40 15 15 C -0.13 -2.30 6.22 -25.38 -0.16 -2.46 15 16 C 0.04 0.60 7.51 -2.76 -0.02 0.58 15 17 N -0.68 -11.57 7.51 -110.09 -0.83 -12.39 15 18 C 0.06 1.12 6.48 -1.90 -0.01 1.10 15 19 H 0.02 0.37 7.98 -51.93 -0.41 -0.05 15 20 H 0.04 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.06 1.09 8.14 -51.92 -0.42 0.66 15 22 H 0.27 7.45 8.31 -40.82 -0.34 7.11 15 23 H 0.06 1.04 7.85 -51.93 -0.41 0.63 15 24 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 25 H 0.03 0.44 8.14 -51.93 -0.42 0.02 15 26 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 27 H 0.33 4.83 8.92 -39.29 -0.35 4.47 15 28 H 0.09 1.93 8.14 -51.93 -0.42 1.51 15 29 H 0.03 0.70 6.27 -51.93 -0.33 0.37 15 LS Contribution 235.56 15.07 3.55 3.55 Total: -1.00 -29.80 235.56 -5.33 -35.13 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -4.29 Total: 2.13 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 0.22 Total: -9.21 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: -0.05 Total: -38.28 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.35 Total: -9.77 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.41 Total: 16.45 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.80 -5.33 -35.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261334005.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.136 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds