Wall clock time and date at job start Mon Mar 30 2020 02:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99607 * 2 1 4 4 H 1.09005 * 109.47070 * 25.25809 * 3 2 1 5 5 C 1.50698 * 109.47082 * 265.25737 * 3 2 1 6 6 H 1.07993 * 120.00105 * 304.80540 * 5 3 2 7 7 C 1.37879 * 120.00005 * 124.80199 * 5 3 2 8 8 N 1.31514 * 120.00015 * 184.71673 * 7 5 3 9 9 Si 1.86798 * 119.99904 * 4.72480 * 7 5 3 10 10 H 1.48500 * 109.47555 * 84.57436 * 9 7 5 11 11 H 1.48497 * 109.47084 * 324.57634 * 9 7 5 12 12 H 1.48500 * 109.47024 * 204.57298 * 9 7 5 13 13 C 1.52995 * 109.47072 * 145.25421 * 3 2 1 14 14 H 1.09006 * 110.64124 * 63.15372 * 13 3 2 15 15 C 1.54592 * 110.72740 * 300.00275 * 13 3 2 16 16 C 1.53990 * 105.14043 * 219.68240 * 15 13 3 17 17 N 1.47900 * 107.05957 * 358.77574 * 16 15 13 18 18 C 1.48538 * 105.82157 * 25.32535 * 17 16 15 19 19 H 1.08996 * 109.47805 * 304.97921 * 1 2 3 20 20 H 1.08998 * 109.47487 * 64.98649 * 1 2 3 21 21 H 1.09007 * 109.46696 * 184.97688 * 1 2 3 22 22 H 0.97001 * 120.00004 * 179.97438 * 8 7 5 23 23 H 1.09002 * 110.30558 * 338.59753 * 15 13 3 24 24 H 1.09001 * 110.30709 * 100.76939 * 15 13 3 25 25 H 1.08998 * 109.91723 * 118.12471 * 16 15 13 26 26 H 1.09004 * 109.92353 * 239.22280 * 16 15 13 27 27 H 1.00895 * 111.00310 * 145.84410 * 17 16 15 28 28 H 1.08993 * 110.66897 * 202.36199 * 18 17 16 29 29 H 1.09000 * 110.66055 * 79.22826 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3088 2.0155 0.4385 5 6 2.3217 1.7167 -1.4159 6 1 2.9413 1.0870 -2.0371 7 6 1.8157 2.8968 -1.9184 8 7 2.0097 3.2108 -3.1806 9 14 0.8549 4.0496 -0.8061 10 1 1.7991 4.9248 -0.0660 11 1 0.0567 3.2536 0.1606 12 1 -0.0549 4.8868 -1.6285 13 6 3.3003 1.2894 0.8221 14 1 4.0369 0.6263 0.3683 15 6 3.0135 0.8706 2.2823 16 6 3.9130 1.7756 3.1444 17 7 4.6837 2.6316 2.2166 18 6 3.8691 2.7222 0.9779 19 1 -0.3634 0.5891 0.8420 20 1 -0.3634 0.4345 -0.9312 21 1 -0.3633 -1.0239 0.0892 22 1 1.6534 4.0409 -3.5342 23 1 1.9642 1.0388 2.5249 24 1 3.2746 -0.1768 2.4337 25 1 3.2990 2.3953 3.7979 26 1 4.5910 1.1653 3.7411 27 1 4.8407 3.5457 2.6139 28 1 4.4948 2.9826 0.1242 29 1 3.0626 3.4451 1.1000 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261334005.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:04 Heat of formation + Delta-G solvation = -70.657664 kcal Electronic energy + Delta-G solvation = -11976.433669 eV Core-core repulsion = 9898.413373 eV Total energy + Delta-G solvation = -2078.020296 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.92858 -37.90012 -34.80324 -32.34701 -30.29527 -28.19818 -27.30923 -23.83308 -22.12395 -20.99099 -19.34859 -17.42872 -17.32060 -16.74678 -15.99622 -15.39054 -15.07846 -14.73365 -14.48037 -13.66980 -13.56954 -13.02174 -12.91350 -12.81224 -12.51248 -12.02015 -11.95115 -11.68653 -11.56468 -10.98146 -10.87319 -10.06693 -9.45886 -8.37972 -6.46513 1.23111 1.24637 1.34224 2.22137 2.85138 3.19443 3.49264 3.88558 4.08045 4.18130 4.34458 4.42267 4.56745 4.64982 4.74455 4.83300 4.86838 4.97996 5.03698 5.15802 5.33003 5.36609 5.55248 5.82954 6.12687 6.49659 6.57131 6.73627 7.24566 8.79619 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.034384 B = 0.018508 C = 0.014788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.139356 B = 1512.465839 C = 1892.960600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.415 6.415 3 C 0.187 3.813 4 H 0.034 0.966 5 C -0.535 4.535 6 H 0.026 0.974 7 C 0.025 3.975 8 N -0.939 5.939 9 Si 0.927 3.073 10 H -0.251 1.251 11 H -0.246 1.246 12 H -0.282 1.282 13 C -0.078 4.078 14 H 0.056 0.944 15 C -0.122 4.122 16 C 0.041 3.959 17 N -0.678 5.678 18 C 0.060 3.940 19 H 0.040 0.960 20 H 0.018 0.982 21 H 0.100 0.900 22 H 0.269 0.731 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.091 0.909 27 H 0.346 0.654 28 H 0.065 0.935 29 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.578 -0.015 13.148 13.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.335 6.335 3 C 0.130 3.870 4 H 0.051 0.949 5 C -0.573 4.573 6 H 0.044 0.956 7 C -0.174 4.174 8 N -0.579 5.579 9 Si 0.750 3.250 10 H -0.175 1.175 11 H -0.171 1.171 12 H -0.208 1.208 13 C -0.098 4.098 14 H 0.075 0.925 15 C -0.160 4.160 16 C -0.087 4.087 17 N -0.308 5.308 18 C -0.069 4.069 19 H 0.059 0.941 20 H 0.037 0.963 21 H 0.119 0.881 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.094 0.906 25 H 0.073 0.927 26 H 0.109 0.891 27 H 0.162 0.838 28 H 0.084 0.916 29 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.008 -0.561 12.802 12.854 hybrid contribution -1.244 1.343 -0.259 1.849 sum -2.252 0.782 12.544 12.768 Atomic orbital electron populations 1.22698 0.81768 1.02691 0.98955 1.87754 1.19638 1.30978 1.95106 1.20258 0.91391 0.82083 0.93277 0.94852 1.21568 1.31348 1.05866 0.98471 0.95571 1.25916 0.96227 0.99261 0.95988 1.70056 1.47480 1.25195 1.15142 0.86108 0.79858 0.79427 0.79580 1.17484 1.17052 1.20839 1.22002 0.96765 0.96120 0.94891 0.92539 1.22440 0.99469 1.00514 0.93621 1.22725 0.95571 0.95870 0.94580 1.63020 1.44781 1.17976 1.05043 1.22731 0.95084 0.95842 0.93235 0.94120 0.96310 0.88142 0.92174 0.91779 0.90624 0.92679 0.89059 0.83783 0.91642 0.94980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.34 10.87 113.37 1.23 2.58 15 2 O -0.42 -19.30 10.01 -148.98 -1.49 -20.80 15 3 C 0.19 8.95 1.47 29.85 0.04 8.99 15 4 H 0.03 1.56 3.95 -2.38 -0.01 1.55 15 5 C -0.53 -31.08 8.79 25.60 0.23 -30.86 15 6 H 0.03 1.74 8.06 -2.91 -0.02 1.72 15 7 C 0.02 1.43 5.47 84.66 0.46 1.89 15 8 N -0.94 -58.12 13.96 21.45 0.30 -57.82 15 9 Si 0.93 42.22 25.94 68.60 1.78 44.00 15 10 H -0.25 -10.59 6.85 99.48 0.68 -9.91 15 11 H -0.25 -10.34 6.21 99.48 0.62 -9.73 15 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 13 C -0.08 -3.29 2.81 -9.59 -0.03 -3.32 15 14 H 0.06 2.61 8.14 -2.38 -0.02 2.59 15 15 C -0.12 -4.02 6.22 31.47 0.20 -3.83 15 16 C 0.04 1.13 7.51 86.45 0.65 1.78 15 17 N -0.68 -21.31 7.51 -502.21 -3.77 -25.08 15 18 C 0.06 2.37 6.48 86.65 0.56 2.93 15 19 H 0.04 1.37 7.98 -2.39 -0.02 1.35 15 20 H 0.02 0.76 8.14 -2.39 -0.02 0.74 15 21 H 0.10 3.06 8.14 -2.38 -0.02 3.04 15 22 H 0.27 15.46 8.31 -92.71 -0.77 14.69 15 23 H 0.06 2.04 7.85 -2.39 -0.02 2.02 15 24 H 0.07 2.34 8.14 -2.39 -0.02 2.32 15 25 H 0.05 1.28 8.14 -2.39 -0.02 1.26 15 26 H 0.09 2.16 8.14 -2.38 -0.02 2.14 15 27 H 0.35 8.98 8.92 -89.70 -0.80 8.18 15 28 H 0.07 2.85 8.14 -2.39 -0.02 2.83 15 29 H 0.03 1.26 6.27 -2.39 -0.01 1.25 15 Total: -1.00 -65.84 235.56 0.37 -65.46 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.21 Total: 14.06 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 3.34 Total: -19.83 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -3.47 Total: -82.91 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -1.49 Total: -20.80 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.78 Total: 44.00 kcal Total: -65.84 0.37 -65.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261334005.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.194 kcal (2) G-P(sol) polarization free energy of solvation -65.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds