Wall clock time and date at job start Mon Mar 30 2020 02:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99817 * 2 1 4 4 C 1.53513 * 114.17077 * 150.00086 * 3 2 1 5 5 N 1.47476 * 87.93231 * 87.62244 * 4 3 2 6 6 C 1.46904 * 110.99902 * 138.70587 * 5 4 3 7 7 H 1.08996 * 109.47051 * 308.49725 * 6 5 4 8 8 C 1.53003 * 109.47157 * 188.50072 * 6 5 4 9 9 C 1.50700 * 109.47264 * 68.50033 * 6 5 4 10 10 H 1.07999 * 120.00259 * 0.02562 * 9 6 5 11 11 C 1.37883 * 119.99900 * 180.02562 * 9 6 5 12 12 N 1.31509 * 119.99846 * 0.02562 * 11 9 6 13 13 Si 1.86799 * 119.99588 * 179.97438 * 11 9 6 14 14 H 1.48499 * 109.47500 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46807 * 120.00103 * 13 11 9 16 16 H 1.48500 * 109.47012 * 239.99846 * 13 11 9 17 17 C 1.47475 * 87.83738 * 27.01409 * 5 4 3 18 18 H 1.08998 * 109.47143 * 299.99617 * 1 2 3 19 19 H 1.09001 * 109.46989 * 59.99855 * 1 2 3 20 20 H 1.09004 * 109.46709 * 180.02562 * 1 2 3 21 21 H 1.08995 * 113.25824 * 17.05000 * 3 2 1 22 22 H 1.09001 * 113.47989 * 332.85533 * 4 3 2 23 23 H 1.08999 * 113.53091 * 202.39902 * 4 3 2 24 24 H 1.08999 * 109.46986 * 54.00729 * 8 6 5 25 25 H 1.09002 * 109.47047 * 174.01051 * 8 6 5 26 26 H 1.09005 * 109.47191 * 294.00924 * 8 6 5 27 27 H 0.97003 * 119.99325 * 180.02562 * 12 11 9 28 28 H 1.08997 * 113.48203 * 87.75346 * 17 5 4 29 29 H 1.09004 * 113.47392 * 218.22914 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3739 1.3864 0.7003 5 7 3.9963 1.0244 -0.5868 6 6 5.2100 1.8169 -0.8259 7 1 4.9837 2.8754 -0.6980 8 6 5.7072 1.5704 -2.2518 9 6 6.2779 1.4091 0.1560 10 1 6.0755 0.6380 0.8846 11 6 7.5134 2.0204 0.1242 12 7 7.7596 2.9597 -0.7627 13 14 8.8368 1.5154 1.3419 14 1 8.3115 0.4467 2.2292 15 1 10.0214 1.0086 0.6035 16 1 9.2296 2.6898 2.1615 17 6 2.8300 1.6287 -1.2571 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.3106 2.0881 0.2936 22 1 3.5094 0.6323 1.4755 23 1 3.6300 2.3901 1.0394 24 1 4.8990 1.7643 -2.9570 25 1 6.5433 2.2365 -2.4652 26 1 6.0337 0.5350 -2.3489 27 1 8.6289 3.3894 -0.7852 28 1 2.9401 2.6974 -1.4408 29 1 2.5044 1.0797 -2.1407 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306391934.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:13 Heat of formation + Delta-G solvation = -4.922960 kcal Electronic energy + Delta-G solvation = -11630.477627 eV Core-core repulsion = 9555.307802 eV Total energy + Delta-G solvation = -2075.169825 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.52291 -36.38904 -33.33057 -30.25827 -26.73009 -25.92995 -25.06832 -24.38784 -20.42726 -19.16144 -16.60348 -15.95483 -15.53522 -14.85681 -14.47063 -13.72849 -13.49535 -13.13524 -12.24266 -11.92545 -11.80252 -11.14746 -11.03790 -10.85226 -10.77958 -10.42641 -10.13869 -10.01187 -9.50789 -9.08898 -8.83344 -8.44869 -7.64578 -5.99761 -4.03776 3.31356 3.39039 3.44908 3.95303 4.44061 4.94452 5.05495 5.32519 5.40929 5.46641 5.50756 5.72689 5.94304 6.10920 6.27171 6.40510 6.48847 6.76587 6.89220 7.08222 7.40697 7.46692 7.57891 7.84843 8.09248 8.31517 8.53428 9.02917 9.61219 11.07681 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.067152 B = 0.010312 C = 0.009396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.866608 B = 2714.528077 C = 2979.285418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.050 3.950 4 C 0.016 3.984 5 N -0.456 5.456 6 C 0.175 3.825 7 H 0.005 0.995 8 C -0.125 4.125 9 C -0.502 4.502 10 H 0.062 0.938 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.285 1.285 17 C -0.020 4.020 18 H 0.037 0.963 19 H 0.037 0.963 20 H 0.082 0.918 21 H 0.070 0.930 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.006 0.994 25 H 0.080 0.920 26 H 0.035 0.965 27 H 0.259 0.741 28 H 0.066 0.934 29 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.718 -1.102 1.109 10.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C -0.009 4.009 4 C -0.113 4.113 5 N -0.179 5.179 6 C 0.068 3.932 7 H 0.023 0.977 8 C -0.183 4.183 9 C -0.541 4.541 10 H 0.080 0.920 11 C -0.142 4.142 12 N -0.534 5.534 13 Si 0.725 3.275 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.150 4.150 18 H 0.056 0.944 19 H 0.056 0.944 20 H 0.100 0.900 21 H 0.088 0.912 22 H 0.097 0.903 23 H 0.093 0.907 24 H 0.025 0.975 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.208 -1.837 0.900 10.411 hybrid contribution 0.523 0.941 0.669 1.267 sum -9.685 -0.896 1.569 9.852 Atomic orbital electron populations 1.22771 0.82143 1.02261 0.99486 1.87991 1.18425 1.26411 1.94413 1.23425 0.94460 0.84655 0.98365 1.23791 0.90529 1.00879 0.96139 1.69015 1.01359 1.45131 1.02395 1.19847 0.87732 0.90841 0.94740 0.97702 1.21682 0.99793 1.01128 0.95742 1.21117 0.96739 1.20503 1.15726 0.92022 1.24941 0.98422 0.94985 0.95891 1.69919 1.22806 1.25592 1.35055 0.86454 0.81622 0.78361 0.81080 1.19694 1.21012 1.21145 1.24224 0.94249 0.98630 0.97916 0.94436 0.94395 0.89977 0.91237 0.90269 0.90740 0.97538 0.90095 0.94603 0.93079 0.91625 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.85 101.05 1.10 1.46 15 2 O -0.35 -6.12 10.75 -35.23 -0.38 -6.50 15 3 C 0.05 0.85 4.66 -26.20 -0.12 0.72 15 4 C 0.02 0.33 6.93 -7.55 -0.05 0.27 15 5 N -0.46 -10.60 6.12 -238.03 -1.46 -12.06 15 6 C 0.18 4.61 1.65 -68.86 -0.11 4.50 15 7 H 0.01 0.15 7.56 -51.93 -0.39 -0.24 15 8 C -0.13 -3.22 9.06 37.16 0.34 -2.88 15 9 C -0.50 -14.28 8.24 -34.44 -0.28 -14.57 15 10 H 0.06 1.78 7.74 -52.49 -0.41 1.38 15 11 C 0.06 1.66 5.30 -17.82 -0.09 1.56 15 12 N -0.89 -25.95 11.39 55.43 0.63 -25.32 15 13 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 15 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 15 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 17 C -0.02 -0.39 6.84 -7.55 -0.05 -0.44 15 18 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 15 19 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 15 20 H 0.08 0.85 8.14 -51.93 -0.42 0.42 15 21 H 0.07 0.98 7.88 -51.93 -0.41 0.57 15 22 H 0.08 1.62 8.14 -51.93 -0.42 1.20 15 23 H 0.07 1.50 7.79 -51.93 -0.40 1.10 15 24 H 0.01 0.13 7.59 -51.93 -0.39 -0.26 15 25 H 0.08 2.22 6.26 -51.93 -0.32 1.90 15 26 H 0.03 0.92 8.14 -51.93 -0.42 0.50 15 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 28 H 0.07 1.22 7.68 -51.93 -0.40 0.82 15 29 H 0.08 1.41 8.14 -51.93 -0.42 0.98 15 LS Contribution 242.31 15.07 3.65 3.65 Total: -1.00 -30.52 242.31 -6.26 -36.78 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -4.40 Total: -3.94 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 0.72 Total: -9.38 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: -0.83 Total: -37.38 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.38 Total: -6.50 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.52 -6.26 -36.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306391934.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.852 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds