Wall clock time and date at job start Mon Mar 30 2020 02:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99817 * 2 1 4 4 C 1.53513 * 114.17077 * 150.00086 * 3 2 1 5 5 N 1.47476 * 87.93231 * 87.62244 * 4 3 2 6 6 C 1.46904 * 110.99902 * 138.70587 * 5 4 3 7 7 H 1.08996 * 109.47051 * 308.49725 * 6 5 4 8 8 C 1.53003 * 109.47157 * 188.50072 * 6 5 4 9 9 C 1.50700 * 109.47264 * 68.50033 * 6 5 4 10 10 H 1.07999 * 120.00259 * 0.02562 * 9 6 5 11 11 C 1.37883 * 119.99900 * 180.02562 * 9 6 5 12 12 N 1.31509 * 119.99846 * 0.02562 * 11 9 6 13 13 Si 1.86799 * 119.99588 * 179.97438 * 11 9 6 14 14 H 1.48499 * 109.47500 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46807 * 120.00103 * 13 11 9 16 16 H 1.48500 * 109.47012 * 239.99846 * 13 11 9 17 17 C 1.47475 * 87.83738 * 27.01409 * 5 4 3 18 18 H 1.08998 * 109.47143 * 299.99617 * 1 2 3 19 19 H 1.09001 * 109.46989 * 59.99855 * 1 2 3 20 20 H 1.09004 * 109.46709 * 180.02562 * 1 2 3 21 21 H 1.08995 * 113.25824 * 17.05000 * 3 2 1 22 22 H 1.09001 * 113.47989 * 332.85533 * 4 3 2 23 23 H 1.08999 * 113.53091 * 202.39902 * 4 3 2 24 24 H 1.08999 * 109.46986 * 54.00729 * 8 6 5 25 25 H 1.09002 * 109.47047 * 174.01051 * 8 6 5 26 26 H 1.09005 * 109.47191 * 294.00924 * 8 6 5 27 27 H 0.97003 * 119.99325 * 180.02562 * 12 11 9 28 28 H 1.08997 * 113.48203 * 87.75346 * 17 5 4 29 29 H 1.09004 * 113.47392 * 218.22914 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3739 1.3864 0.7003 5 7 3.9963 1.0244 -0.5868 6 6 5.2100 1.8169 -0.8259 7 1 4.9837 2.8754 -0.6980 8 6 5.7072 1.5704 -2.2518 9 6 6.2779 1.4091 0.1560 10 1 6.0755 0.6380 0.8846 11 6 7.5134 2.0204 0.1242 12 7 7.7596 2.9597 -0.7627 13 14 8.8368 1.5154 1.3419 14 1 8.3115 0.4467 2.2292 15 1 10.0214 1.0086 0.6035 16 1 9.2296 2.6898 2.1615 17 6 2.8300 1.6287 -1.2571 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.3106 2.0881 0.2936 22 1 3.5094 0.6323 1.4755 23 1 3.6300 2.3901 1.0394 24 1 4.8990 1.7643 -2.9570 25 1 6.5433 2.2365 -2.4652 26 1 6.0337 0.5350 -2.3489 27 1 8.6289 3.3894 -0.7852 28 1 2.9401 2.6974 -1.4408 29 1 2.5044 1.0797 -2.1407 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306391934.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:12 Heat of formation + Delta-G solvation = -27.941707 kcal Electronic energy + Delta-G solvation = -11631.475795 eV Core-core repulsion = 9555.307802 eV Total energy + Delta-G solvation = -2076.167993 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.08349 -37.77919 -35.35162 -32.24778 -28.02797 -27.74462 -26.60409 -26.20163 -22.27993 -20.73066 -18.54233 -17.52409 -17.19271 -16.27738 -16.07064 -15.33950 -15.12271 -14.82312 -14.00418 -13.57233 -13.36174 -13.05685 -12.79015 -12.56293 -12.33917 -12.21187 -12.10853 -11.80960 -11.24937 -10.89854 -10.58352 -10.39255 -9.45609 -8.15016 -6.26898 1.39114 1.40986 1.53555 2.40709 2.72924 3.13183 3.48776 3.58967 4.04149 4.38955 4.57068 4.62228 4.64647 4.71699 4.75292 4.82076 4.87427 4.92777 5.00450 5.08487 5.41002 5.45333 5.67507 6.04567 6.25720 6.38453 6.57097 6.85901 7.42265 8.91662 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.067152 B = 0.010312 C = 0.009396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.866608 B = 2714.528077 C = 2979.285418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.385 6.385 3 C 0.077 3.923 4 C 0.008 3.992 5 N -0.483 5.483 6 C 0.180 3.820 7 H -0.018 1.018 8 C -0.114 4.114 9 C -0.523 4.523 10 H 0.049 0.951 11 C 0.013 3.987 12 N -0.919 5.919 13 Si 0.962 3.038 14 H -0.271 1.271 15 H -0.279 1.279 16 H -0.276 1.276 17 C -0.022 4.022 18 H 0.056 0.944 19 H 0.052 0.948 20 H 0.097 0.903 21 H 0.110 0.890 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.028 0.972 25 H 0.059 0.941 26 H 0.023 0.977 27 H 0.263 0.737 28 H 0.072 0.928 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.825 -1.251 1.583 11.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.303 6.303 3 C 0.018 3.982 4 C -0.121 4.121 5 N -0.206 5.206 6 C 0.073 3.927 7 H -0.001 1.001 8 C -0.172 4.172 9 C -0.561 4.561 10 H 0.067 0.933 11 C -0.186 4.186 12 N -0.558 5.558 13 Si 0.787 3.213 14 H -0.196 1.196 15 H -0.205 1.205 16 H -0.202 1.202 17 C -0.152 4.152 18 H 0.074 0.926 19 H 0.070 0.930 20 H 0.115 0.885 21 H 0.127 0.873 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.047 0.953 25 H 0.078 0.922 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.338 -1.991 1.372 11.593 hybrid contribution 0.785 0.959 0.507 1.339 sum -10.553 -1.032 1.880 10.768 Atomic orbital electron populations 1.23057 0.79279 1.03901 1.01086 1.87949 1.21572 1.26437 1.94368 1.23185 0.93724 0.85895 0.95390 1.23833 0.92976 1.00278 0.95047 1.68936 1.01565 1.45325 1.04821 1.19658 0.88911 0.89812 0.94346 1.00067 1.21515 0.99730 0.99646 0.96354 1.21331 0.97996 1.20508 1.16282 0.93305 1.25713 1.00412 0.94886 0.97559 1.70023 1.23446 1.26197 1.36164 0.85452 0.78767 0.78184 0.78901 1.19559 1.20465 1.20171 1.24292 0.92987 0.98819 0.99058 0.92573 0.92953 0.88489 0.87279 0.91269 0.91076 0.95301 0.92206 0.95762 0.92792 0.91031 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.85 113.37 1.23 1.70 15 2 O -0.38 -12.35 10.75 -148.98 -1.60 -13.95 15 3 C 0.08 2.44 4.66 30.94 0.14 2.59 15 4 C 0.01 0.32 6.93 83.57 0.58 0.90 15 5 N -0.48 -22.43 6.12 -907.39 -5.55 -27.98 15 6 C 0.18 9.61 1.65 44.17 0.07 9.68 15 7 H -0.02 -1.03 7.56 -2.39 -0.02 -1.05 15 8 C -0.11 -5.92 9.06 71.98 0.65 -5.27 15 9 C -0.52 -30.18 8.24 25.60 0.21 -29.96 15 10 H 0.05 2.87 7.74 -2.91 -0.02 2.85 15 11 C 0.01 0.75 5.30 84.66 0.45 1.20 15 12 N -0.92 -53.72 11.39 21.45 0.24 -53.47 15 13 Si 0.96 44.81 29.54 68.60 2.03 46.84 15 14 H -0.27 -12.46 7.11 99.48 0.71 -11.76 15 15 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 16 H -0.28 -12.40 7.11 99.48 0.71 -11.69 15 17 C -0.02 -0.82 6.84 83.57 0.57 -0.24 15 18 H 0.06 0.96 8.14 -2.39 -0.02 0.94 15 19 H 0.05 0.93 8.14 -2.39 -0.02 0.91 15 20 H 0.10 1.69 8.14 -2.38 -0.02 1.67 15 21 H 0.11 2.64 7.88 -2.39 -0.02 2.62 15 22 H 0.07 2.85 8.14 -2.39 -0.02 2.83 15 23 H 0.07 2.87 7.79 -2.39 -0.02 2.85 15 24 H 0.03 1.31 7.59 -2.39 -0.02 1.29 15 25 H 0.06 3.33 6.26 -2.39 -0.01 3.31 15 26 H 0.02 1.25 8.14 -2.38 -0.02 1.23 15 27 H 0.26 14.49 8.31 -92.71 -0.77 13.72 15 28 H 0.07 2.56 7.68 -2.39 -0.02 2.54 15 29 H 0.08 2.86 8.14 -2.39 -0.02 2.84 15 Total: -1.00 -65.01 242.31 0.13 -64.88 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: 1.10 Total: 3.10 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 3.91 Total: -19.42 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -5.31 Total: -81.45 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -1.60 Total: -13.95 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -65.01 0.13 -64.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306391934.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.940 kcal (2) G-P(sol) polarization free energy of solvation -65.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds