Wall clock time and date at job start Mon Mar 30 2020 02:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99888 * 2 1 4 4 C 1.53517 * 114.16678 * 150.00136 * 3 2 1 5 5 N 1.47479 * 87.99753 * 87.65378 * 4 3 2 6 6 C 1.46897 * 110.99965 * 138.66774 * 5 4 3 7 7 H 1.08994 * 109.47617 * 300.00333 * 6 5 4 8 8 C 1.53003 * 109.46882 * 60.00457 * 6 5 4 9 9 C 1.50702 * 109.46973 * 179.97438 * 6 5 4 10 10 H 1.07997 * 120.00143 * 0.02562 * 9 6 5 11 11 C 1.37883 * 119.99566 * 180.02562 * 9 6 5 12 12 N 1.31508 * 120.00287 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99543 * 180.02562 * 11 9 6 14 14 H 1.48500 * 109.47532 * 59.99981 * 13 11 9 15 15 H 1.48501 * 109.47112 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46967 * 299.99768 * 13 11 9 17 17 C 1.47487 * 87.83637 * 26.97912 * 5 4 3 18 18 H 1.09003 * 109.46874 * 299.99617 * 1 2 3 19 19 H 1.09001 * 109.47088 * 59.99639 * 1 2 3 20 20 H 1.08997 * 109.46835 * 179.97438 * 1 2 3 21 21 H 1.09000 * 113.38361 * 16.92804 * 3 2 1 22 22 H 1.09002 * 113.47888 * 332.85736 * 4 3 2 23 23 H 1.09003 * 113.47419 * 202.45070 * 4 3 2 24 24 H 1.09001 * 109.46914 * 299.99665 * 8 6 5 25 25 H 1.08997 * 109.47273 * 60.00044 * 8 6 5 26 26 H 1.08998 * 109.47266 * 179.97438 * 8 6 5 27 27 H 0.97002 * 119.99858 * 179.97438 * 12 11 9 28 28 H 1.09004 * 113.47787 * 87.75324 * 17 5 4 29 29 H 1.09001 * 113.47615 * 218.16496 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3740 1.3863 0.7003 5 7 3.9980 1.0252 -0.5862 6 6 5.2110 1.8189 -0.8242 7 1 4.9539 2.8779 -0.8455 8 6 6.2176 1.5610 0.2988 9 6 5.8197 1.4224 -2.1446 10 1 5.3520 0.6577 -2.7469 11 6 6.9737 2.0362 -2.5836 12 7 7.5435 2.9670 -1.8499 13 14 7.7279 1.5452 -4.2206 14 1 6.7512 1.7961 -5.3107 15 1 8.9548 2.3467 -4.4605 16 1 8.0776 0.1023 -4.1916 17 6 2.8316 1.6285 -1.2576 18 1 -0.3633 0.5138 0.8901 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 1.3118 2.0900 0.2913 22 1 3.5095 0.6321 1.4755 23 1 3.6289 2.3903 1.0399 24 1 5.7776 1.8474 1.2540 25 1 6.4748 0.5020 0.3201 26 1 7.1179 2.1495 0.1221 27 1 8.3556 3.3985 -2.1586 28 1 2.9409 2.6974 -1.4409 29 1 2.5080 1.0800 -2.1422 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306391935.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:14 Heat of formation + Delta-G solvation = -3.800893 kcal Electronic energy + Delta-G solvation = -11623.514330 eV Core-core repulsion = 9548.393161 eV Total energy + Delta-G solvation = -2075.121169 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.54419 -36.40651 -33.33308 -30.23787 -26.78964 -25.89540 -25.08238 -24.39374 -20.47675 -19.11724 -16.60326 -15.94099 -15.53603 -14.90987 -14.48088 -13.71842 -13.53159 -13.14234 -12.30746 -11.97801 -11.71004 -11.16076 -11.08995 -10.80366 -10.66992 -10.53812 -10.16521 -9.92828 -9.51265 -9.10284 -8.94403 -8.39224 -7.63704 -5.97517 -4.01417 3.35760 3.39141 3.43381 3.93677 4.45271 4.94558 5.03883 5.33586 5.38536 5.45279 5.51449 5.72950 5.92995 6.07102 6.26156 6.35359 6.46359 6.73925 6.81430 7.06042 7.38741 7.45152 7.56413 7.86410 8.09258 8.32431 8.56675 9.04735 9.63163 11.09471 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.064781 B = 0.010298 C = 0.009349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.124114 B = 2718.270683 C = 2994.272284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.050 3.950 4 C -0.004 4.004 5 N -0.453 5.453 6 C 0.176 3.824 7 H 0.006 0.994 8 C -0.134 4.134 9 C -0.497 4.497 10 H 0.061 0.939 11 C 0.057 3.943 12 N -0.897 5.897 13 Si 0.898 3.102 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.276 1.276 17 C -0.005 4.005 18 H 0.037 0.963 19 H 0.038 0.962 20 H 0.082 0.918 21 H 0.070 0.930 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.007 0.993 25 H 0.034 0.966 26 H 0.086 0.914 27 H 0.260 0.740 28 H 0.069 0.931 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.246 -1.123 3.483 10.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C -0.008 4.008 4 C -0.133 4.133 5 N -0.176 5.176 6 C 0.069 3.931 7 H 0.024 0.976 8 C -0.193 4.193 9 C -0.536 4.536 10 H 0.079 0.921 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.726 3.274 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.202 1.202 17 C -0.135 4.135 18 H 0.055 0.945 19 H 0.057 0.943 20 H 0.100 0.900 21 H 0.088 0.912 22 H 0.097 0.903 23 H 0.087 0.913 24 H 0.026 0.974 25 H 0.053 0.947 26 H 0.105 0.895 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.718 -1.853 3.325 10.436 hybrid contribution 0.210 0.936 -0.750 1.217 sum -9.507 -0.917 2.575 9.892 Atomic orbital electron populations 1.22772 0.82074 1.02287 0.99516 1.87987 1.18485 1.26341 1.94426 1.23426 0.94115 0.84707 0.98592 1.23961 0.92217 1.00290 0.96847 1.69075 1.01899 1.45358 1.01310 1.19842 0.86843 0.90863 0.95558 0.97604 1.21815 1.02173 1.00638 0.94638 1.21022 1.08815 1.20776 1.02960 0.92101 1.24943 0.96877 0.95053 0.97487 1.69877 1.20242 1.25927 1.37589 0.86553 0.78367 0.78583 0.83853 1.20353 1.21392 1.20200 1.24131 0.92855 0.98855 0.97618 0.94480 0.94293 0.89957 0.91217 0.90329 0.91303 0.97397 0.94697 0.89514 0.92984 0.91329 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.85 101.05 1.10 1.46 15 2 O -0.35 -6.10 10.75 -35.23 -0.38 -6.48 15 3 C 0.05 0.85 4.66 -26.13 -0.12 0.73 15 4 C 0.00 -0.07 6.28 -7.54 -0.05 -0.12 15 5 N -0.45 -10.56 6.13 -237.79 -1.46 -12.01 15 6 C 0.18 4.63 1.72 -68.86 -0.12 4.51 15 7 H 0.01 0.18 7.52 -51.93 -0.39 -0.21 15 8 C -0.13 -3.42 8.87 37.16 0.33 -3.09 15 9 C -0.50 -14.30 8.69 -34.44 -0.30 -14.60 15 10 H 0.06 1.78 7.81 -52.49 -0.41 1.37 15 11 C 0.06 1.62 5.30 -17.82 -0.09 1.53 15 12 N -0.90 -26.08 11.32 55.43 0.63 -25.46 15 13 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 15 14 H -0.28 -6.70 7.11 56.52 0.40 -6.29 15 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 17 C 0.00 -0.10 7.42 -7.47 -0.06 -0.15 15 18 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 15 19 H 0.04 0.43 8.14 -51.93 -0.42 0.01 15 20 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.07 0.97 7.88 -51.93 -0.41 0.56 15 22 H 0.08 1.48 8.14 -51.93 -0.42 1.05 15 23 H 0.07 1.27 7.66 -51.93 -0.40 0.87 15 24 H 0.01 0.16 7.03 -51.93 -0.37 -0.20 15 25 H 0.03 0.88 8.14 -51.93 -0.42 0.46 15 26 H 0.09 2.38 6.07 -51.93 -0.32 2.07 15 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 15 28 H 0.07 1.36 7.54 -51.93 -0.39 0.96 15 29 H 0.08 1.57 8.14 -51.93 -0.42 1.15 15 LS Contribution 241.52 15.07 3.64 3.64 Total: -1.00 -30.66 241.52 -6.25 -36.91 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: -4.35 Total: -3.80 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 0.69 Total: -9.72 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.83 Total: -37.47 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.38 Total: -6.48 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.66 -6.25 -36.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306391935.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.107 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds