Wall clock time and date at job start Mon Mar 30 2020 02:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99888 * 2 1 4 4 C 1.53517 * 114.16678 * 150.00136 * 3 2 1 5 5 N 1.47479 * 87.99753 * 87.65378 * 4 3 2 6 6 C 1.46897 * 110.99965 * 138.66774 * 5 4 3 7 7 H 1.08994 * 109.47617 * 300.00333 * 6 5 4 8 8 C 1.53003 * 109.46882 * 60.00457 * 6 5 4 9 9 C 1.50702 * 109.46973 * 179.97438 * 6 5 4 10 10 H 1.07997 * 120.00143 * 0.02562 * 9 6 5 11 11 C 1.37883 * 119.99566 * 180.02562 * 9 6 5 12 12 N 1.31508 * 120.00287 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99543 * 180.02562 * 11 9 6 14 14 H 1.48500 * 109.47532 * 59.99981 * 13 11 9 15 15 H 1.48501 * 109.47112 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46967 * 299.99768 * 13 11 9 17 17 C 1.47487 * 87.83637 * 26.97912 * 5 4 3 18 18 H 1.09003 * 109.46874 * 299.99617 * 1 2 3 19 19 H 1.09001 * 109.47088 * 59.99639 * 1 2 3 20 20 H 1.08997 * 109.46835 * 179.97438 * 1 2 3 21 21 H 1.09000 * 113.38361 * 16.92804 * 3 2 1 22 22 H 1.09002 * 113.47888 * 332.85736 * 4 3 2 23 23 H 1.09003 * 113.47419 * 202.45070 * 4 3 2 24 24 H 1.09001 * 109.46914 * 299.99665 * 8 6 5 25 25 H 1.08997 * 109.47273 * 60.00044 * 8 6 5 26 26 H 1.08998 * 109.47266 * 179.97438 * 8 6 5 27 27 H 0.97002 * 119.99858 * 179.97438 * 12 11 9 28 28 H 1.09004 * 113.47787 * 87.75324 * 17 5 4 29 29 H 1.09001 * 113.47615 * 218.16496 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3740 1.3863 0.7003 5 7 3.9980 1.0252 -0.5862 6 6 5.2110 1.8189 -0.8242 7 1 4.9539 2.8779 -0.8455 8 6 6.2176 1.5610 0.2988 9 6 5.8197 1.4224 -2.1446 10 1 5.3520 0.6577 -2.7469 11 6 6.9737 2.0362 -2.5836 12 7 7.5435 2.9670 -1.8499 13 14 7.7279 1.5452 -4.2206 14 1 6.7512 1.7961 -5.3107 15 1 8.9548 2.3467 -4.4605 16 1 8.0776 0.1023 -4.1916 17 6 2.8316 1.6285 -1.2576 18 1 -0.3633 0.5138 0.8901 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 1.3118 2.0900 0.2913 22 1 3.5095 0.6321 1.4755 23 1 3.6289 2.3903 1.0399 24 1 5.7776 1.8474 1.2540 25 1 6.4748 0.5020 0.3201 26 1 7.1179 2.1495 0.1221 27 1 8.3556 3.3985 -2.1586 28 1 2.9409 2.6974 -1.4409 29 1 2.5080 1.0800 -2.1422 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306391935.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:14 Heat of formation + Delta-G solvation = -27.019303 kcal Electronic energy + Delta-G solvation = -11624.521156 eV Core-core repulsion = 9548.393161 eV Total energy + Delta-G solvation = -2076.127995 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.09773 -37.79042 -35.36024 -32.21994 -28.15611 -27.63056 -26.60756 -26.21447 -22.30346 -20.69544 -18.53659 -17.52906 -17.18739 -16.29543 -16.11610 -15.37156 -15.13771 -14.77931 -14.04628 -13.50965 -13.40665 -13.09832 -12.75144 -12.50826 -12.37543 -12.20292 -12.05694 -11.80705 -11.24242 -11.02287 -10.54633 -10.38459 -9.44190 -8.13812 -6.25941 1.40118 1.42588 1.50502 2.41067 2.72192 3.13433 3.50281 3.56764 4.03149 4.38200 4.54091 4.61866 4.63546 4.72564 4.75402 4.76750 4.85902 4.91768 4.99567 5.05687 5.37822 5.48839 5.67528 6.07904 6.25436 6.38036 6.59970 6.85513 7.42909 8.91763 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.064781 B = 0.010298 C = 0.009349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.124114 B = 2718.270683 C = 2994.272284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.384 6.384 3 C 0.077 3.923 4 C -0.007 4.007 5 N -0.483 5.483 6 C 0.181 3.819 7 H -0.018 1.018 8 C -0.123 4.123 9 C -0.522 4.522 10 H 0.046 0.954 11 C 0.012 3.988 12 N -0.919 5.919 13 Si 0.961 3.039 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.274 1.274 17 C -0.012 4.012 18 H 0.059 0.941 19 H 0.048 0.952 20 H 0.097 0.903 21 H 0.111 0.889 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.033 0.967 25 H 0.024 0.976 26 H 0.063 0.937 27 H 0.263 0.737 28 H 0.067 0.933 29 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.401 -1.255 3.589 12.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.303 6.303 3 C 0.019 3.981 4 C -0.136 4.136 5 N -0.206 5.206 6 C 0.073 3.927 7 H 0.000 1.000 8 C -0.182 4.182 9 C -0.560 4.560 10 H 0.065 0.935 11 C -0.186 4.186 12 N -0.559 5.559 13 Si 0.787 3.213 14 H -0.197 1.197 15 H -0.204 1.204 16 H -0.200 1.200 17 C -0.142 4.142 18 H 0.077 0.923 19 H 0.067 0.933 20 H 0.115 0.885 21 H 0.129 0.871 22 H 0.099 0.901 23 H 0.095 0.905 24 H 0.052 0.948 25 H 0.043 0.957 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.894 -1.991 3.438 11.596 hybrid contribution 0.496 0.950 -0.754 1.311 sum -10.399 -1.040 2.684 10.790 Atomic orbital electron populations 1.23055 0.79300 1.03903 1.01064 1.87946 1.21561 1.26438 1.94343 1.23205 0.93886 0.85924 0.95131 1.24033 0.93453 1.00729 0.95371 1.68988 1.01816 1.45476 1.04327 1.19649 0.88411 0.89799 0.94831 1.00020 1.21642 1.01249 0.99421 0.95840 1.21268 1.09578 1.20866 1.04298 0.93546 1.25709 0.97139 0.94911 1.00863 1.69986 1.20460 1.26439 1.38972 0.85565 0.77755 0.78259 0.79760 1.19670 1.20437 1.19976 1.24198 0.92667 0.98465 0.98847 0.92278 0.93292 0.88484 0.87149 0.90055 0.90473 0.94821 0.95661 0.91820 0.92766 0.91447 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.85 113.37 1.23 1.70 15 2 O -0.38 -12.31 10.75 -148.98 -1.60 -13.91 15 3 C 0.08 2.43 4.66 30.98 0.14 2.58 15 4 C -0.01 -0.25 6.28 83.58 0.53 0.28 15 5 N -0.48 -22.44 6.13 -906.55 -5.56 -28.00 15 6 C 0.18 9.64 1.72 44.17 0.08 9.72 15 7 H -0.02 -1.01 7.52 -2.39 -0.02 -1.02 15 8 C -0.12 -6.32 8.87 71.98 0.64 -5.68 15 9 C -0.52 -30.49 8.69 25.60 0.22 -30.27 15 10 H 0.05 2.77 7.81 -2.91 -0.02 2.75 15 11 C 0.01 0.71 5.30 84.66 0.45 1.16 15 12 N -0.92 -53.88 11.32 21.45 0.24 -53.63 15 13 Si 0.96 45.11 29.54 68.60 2.03 47.13 15 14 H -0.27 -12.38 7.11 99.48 0.71 -11.67 15 15 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 16 H -0.27 -12.71 7.11 99.48 0.71 -12.00 15 17 C -0.01 -0.48 7.42 83.62 0.62 0.14 15 18 H 0.06 0.98 8.14 -2.39 -0.02 0.96 15 19 H 0.05 0.92 8.14 -2.39 -0.02 0.90 15 20 H 0.10 1.71 8.14 -2.39 -0.02 1.69 15 21 H 0.11 2.62 7.88 -2.39 -0.02 2.60 15 22 H 0.08 2.92 8.14 -2.39 -0.02 2.90 15 23 H 0.08 2.71 7.66 -2.39 -0.02 2.69 15 24 H 0.03 1.49 7.03 -2.39 -0.02 1.47 15 25 H 0.02 1.28 8.14 -2.39 -0.02 1.26 15 26 H 0.06 3.54 6.07 -2.39 -0.01 3.53 15 27 H 0.26 14.61 8.31 -92.71 -0.77 13.84 15 28 H 0.07 2.65 7.54 -2.39 -0.02 2.63 15 29 H 0.07 2.77 8.14 -2.39 -0.02 2.76 15 Total: -1.00 -65.52 241.52 0.12 -65.40 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: 1.11 Total: 3.39 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 3.91 Total: -20.38 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -5.32 Total: -81.63 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -1.60 Total: -13.91 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -65.52 0.12 -65.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306391935.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.379 kcal (2) G-P(sol) polarization free energy of solvation -65.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds