Wall clock time and date at job start Mon Mar 30 2020 02:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.58400 * 2 1 4 4 C 1.53195 * 109.58791 * 239.71785 * 2 1 3 5 5 C 1.53043 * 109.30876 * 294.84637 * 4 2 1 6 6 H 1.08997 * 109.46085 * 58.65813 * 5 4 2 7 7 O 1.42901 * 109.45504 * 178.61501 * 5 4 2 8 8 C 1.53034 * 109.54078 * 298.63581 * 5 4 2 9 9 C 1.53195 * 109.31315 * 61.36716 * 8 5 4 10 10 N 1.46924 * 108.89278 * 305.29282 * 9 8 5 11 11 C 1.36936 * 120.63143 * 233.67513 * 10 9 8 12 12 H 1.07996 * 120.00270 * 26.02199 * 11 10 9 13 13 C 1.38820 * 119.99639 * 206.02612 * 11 10 9 14 14 N 1.31613 * 120.00097 * 18.68715 * 13 11 10 15 15 Si 1.86807 * 119.99669 * 198.68721 * 13 11 10 16 16 H 1.48498 * 109.47115 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46875 * 120.00003 * 15 13 11 18 18 H 1.48497 * 109.47091 * 240.00248 * 15 13 11 19 19 H 1.09002 * 109.46974 * 180.28233 * 1 2 3 20 20 H 1.08996 * 109.47330 * 300.28337 * 1 2 3 21 21 H 1.09002 * 109.46968 * 60.28403 * 1 2 3 22 22 H 1.09000 * 109.49667 * 174.89596 * 4 2 1 23 23 H 1.08995 * 109.52041 * 54.81508 * 4 2 1 24 24 H 0.96705 * 113.99879 * 180.02562 * 7 5 4 25 25 H 1.09005 * 109.49847 * 301.41502 * 8 5 4 26 26 H 1.08996 * 109.50152 * 181.31824 * 8 5 4 27 27 H 1.08994 * 109.58625 * 65.15608 * 9 8 5 28 28 H 1.09000 * 109.58621 * 185.43972 * 9 8 5 29 29 H 0.97008 * 119.99917 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2464 5 6 1.6415 -2.2026 -1.1729 6 1 0.5566 -2.2801 -1.1022 7 8 2.0911 -2.8777 -2.3494 8 6 2.2800 -2.8464 0.0599 9 6 1.7691 -2.1426 1.3211 10 7 2.0228 -0.7008 1.1971 11 6 2.7055 -0.0260 2.1737 12 1 3.4078 -0.5520 2.8034 13 6 2.4948 1.3342 2.3543 14 7 1.4112 1.9024 1.8693 15 14 3.7495 2.3580 3.2855 16 1 4.8704 1.4885 3.7244 17 1 4.2719 3.4281 2.3982 18 1 3.1038 2.9715 4.4738 19 1 -0.3633 -1.0277 0.0051 20 1 -0.3634 0.5182 0.8874 21 1 -0.3633 0.5094 -0.8925 22 1 3.1298 -0.6487 -1.2921 23 1 1.6080 -0.2758 -2.1374 24 1 1.8702 -3.8190 -2.3714 25 1 3.3640 -2.7474 0.0018 26 1 2.0123 -3.9023 0.0988 27 1 0.6987 -2.3174 1.4288 28 1 2.2926 -2.5320 2.1943 29 1 1.2638 2.8528 1.9959 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306708677.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:00 Heat of formation + Delta-G solvation = -38.789630 kcal Electronic energy + Delta-G solvation = -12118.073688 eV Core-core repulsion = 10041.435293 eV Total energy + Delta-G solvation = -2076.638394 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.33150 -35.56467 -32.32697 -31.09508 -29.46081 -26.63332 -24.11910 -21.82484 -21.61732 -18.47011 -16.83223 -16.56958 -14.79639 -14.19795 -13.89837 -13.59127 -13.04641 -12.67860 -12.30015 -11.97136 -11.34653 -11.15233 -10.87397 -10.83070 -10.63058 -10.46568 -9.98681 -9.93631 -9.65537 -9.26499 -9.09887 -8.41466 -6.69376 -5.77952 -3.17835 3.38595 3.46911 3.49045 4.50738 4.76164 5.33120 5.43084 5.53427 5.61721 5.85867 6.08928 6.30160 6.36737 6.56494 6.65223 6.66601 6.73697 6.76076 6.89218 7.00326 7.14764 7.63398 7.73471 7.87180 8.07380 8.45666 9.22943 9.85597 10.41955 11.30262 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.059445 B = 0.013436 C = 0.012566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.906771 B = 2083.455711 C = 2227.703669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.190 3.810 3 H 0.102 0.898 4 C -0.125 4.125 5 C 0.107 3.893 6 H 0.050 0.950 7 O -0.578 6.578 8 C -0.164 4.164 9 C 0.146 3.854 10 N -0.588 5.588 11 C -0.251 4.251 12 H 0.067 0.933 13 C 0.001 3.999 14 N -0.898 5.898 15 Si 0.901 3.099 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.291 1.291 19 H 0.024 0.976 20 H 0.076 0.924 21 H 0.028 0.972 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.366 0.634 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.019 0.981 28 H 0.054 0.946 29 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.526 -6.385 -4.025 7.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.084 3.916 3 H 0.120 0.880 4 C -0.164 4.164 5 C 0.049 3.951 6 H 0.068 0.932 7 O -0.383 6.383 8 C -0.203 4.203 9 C 0.020 3.980 10 N -0.310 5.310 11 C -0.380 4.380 12 H 0.085 0.915 13 C -0.197 4.197 14 N -0.543 5.543 15 Si 0.731 3.269 16 H -0.204 1.204 17 H -0.216 1.216 18 H -0.218 1.218 19 H 0.043 0.957 20 H 0.095 0.905 21 H 0.048 0.952 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.211 0.789 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.336 -5.602 -4.119 6.961 hybrid contribution 0.343 -0.029 0.619 0.708 sum 0.006 -5.630 -3.500 6.629 Atomic orbital electron populations 1.22131 0.98619 0.98551 1.01259 1.20407 0.91846 0.97078 0.82293 0.88046 1.22195 1.01380 0.92681 1.00179 1.21898 0.96466 0.93475 0.83234 0.93244 1.86535 1.82967 1.25463 1.43311 1.22734 1.01641 0.98135 0.97831 1.20825 0.96887 0.86091 0.94222 1.44236 1.64968 1.02491 1.19343 1.19233 1.15662 0.91674 1.11453 0.91549 1.24973 0.96737 0.98286 0.99720 1.70027 1.24003 1.10835 1.49425 0.86251 0.81250 0.80365 0.79073 1.20369 1.21588 1.21817 0.95729 0.90493 0.95244 0.92241 0.92746 0.78896 0.91699 0.93215 0.96342 0.92699 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.82 37.16 0.33 -2.95 15 2 C 0.19 4.53 2.34 -67.44 -0.16 4.38 15 3 H 0.10 2.74 5.98 -51.93 -0.31 2.43 15 4 C -0.13 -2.62 5.21 -26.61 -0.14 -2.76 15 5 C 0.11 1.98 3.22 -26.69 -0.09 1.90 15 6 H 0.05 0.90 6.51 -51.93 -0.34 0.56 15 7 O -0.58 -9.76 13.32 -35.23 -0.47 -10.23 15 8 C -0.16 -2.98 5.70 -26.61 -0.15 -3.13 15 9 C 0.15 3.11 6.09 -3.71 -0.02 3.08 15 10 N -0.59 -14.75 2.72 -164.56 -0.45 -15.19 15 11 C -0.25 -6.88 9.60 -15.06 -0.14 -7.02 15 12 H 0.07 1.80 7.89 -52.49 -0.41 1.39 15 13 C 0.00 0.03 4.90 -17.43 -0.09 -0.05 15 14 N -0.90 -25.40 10.05 55.49 0.56 -24.84 15 15 Si 0.90 21.66 29.59 -169.99 -5.03 16.62 15 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 15 19 H 0.02 0.50 5.72 -51.93 -0.30 0.20 15 20 H 0.08 1.94 7.14 -51.93 -0.37 1.57 15 21 H 0.03 0.59 8.14 -51.93 -0.42 0.17 15 22 H 0.06 1.30 8.14 -51.93 -0.42 0.88 15 23 H 0.05 1.07 8.14 -51.93 -0.42 0.65 15 24 H 0.37 4.36 9.08 45.56 0.41 4.77 15 25 H 0.06 1.26 8.14 -51.93 -0.42 0.83 15 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 27 H 0.02 0.39 7.48 -51.93 -0.39 0.00 15 28 H 0.05 1.14 7.93 -51.93 -0.41 0.72 15 29 H 0.25 6.93 8.31 -40.82 -0.34 6.59 15 LS Contribution 229.63 15.07 3.46 3.46 Total: -1.00 -29.33 229.63 -5.75 -35.08 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -3.37 Total: 1.66 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -0.46 Total: -6.56 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.11 Total: -40.03 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -0.47 Total: -10.23 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -29.33 -5.75 -35.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306708677.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.706 kcal (2) G-P(sol) polarization free energy of solvation -29.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds