Wall clock time and date at job start Mon Mar 30 2020 02:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.58223 * 2 1 4 4 C 1.53195 * 109.58319 * 120.28918 * 2 1 3 5 5 C 1.53043 * 109.30742 * 174.42572 * 4 2 1 6 6 H 1.08991 * 109.46406 * 58.64869 * 5 4 2 7 7 O 1.42901 * 109.45877 * 178.61123 * 5 4 2 8 8 C 1.53040 * 109.53703 * 298.62795 * 5 4 2 9 9 C 1.53195 * 109.31325 * 61.36869 * 8 5 4 10 10 N 1.46927 * 109.58300 * 239.72034 * 2 1 3 11 11 C 1.36932 * 120.63418 * 6.60448 * 10 2 1 12 12 H 1.07996 * 120.00358 * 330.23983 * 11 10 2 13 13 C 1.38813 * 119.99724 * 150.24006 * 11 10 2 14 14 N 1.31617 * 120.00118 * 344.60507 * 13 11 10 15 15 Si 1.86805 * 120.00126 * 164.61029 * 13 11 10 16 16 H 1.48492 * 109.47479 * 89.99318 * 15 13 11 17 17 H 1.48501 * 109.46950 * 210.00089 * 15 13 11 18 18 H 1.48507 * 109.46499 * 329.99409 * 15 13 11 19 19 H 1.08995 * 109.47237 * 299.99542 * 1 2 3 20 20 H 1.09000 * 109.47225 * 59.99928 * 1 2 3 21 21 H 1.09002 * 109.46876 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.49153 * 294.36968 * 4 2 1 23 23 H 1.08993 * 109.50185 * 54.47110 * 4 2 1 24 24 H 0.96701 * 114.00161 * 179.97438 * 7 5 4 25 25 H 1.09003 * 109.50110 * 181.32024 * 8 5 4 26 26 H 1.09001 * 109.49850 * 301.38713 * 8 5 4 27 27 H 1.09001 * 109.58417 * 65.14930 * 9 8 5 28 28 H 1.08997 * 109.59021 * 185.43268 * 9 8 5 29 29 H 0.97002 * 120.00232 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7280 1.2463 5 6 3.5675 -0.8466 1.1712 6 1 4.0061 0.1486 1.0991 7 8 4.0530 -1.4965 2.3476 8 6 3.9569 -1.6658 -0.0614 9 6 3.4651 -0.9486 -1.3226 10 7 2.0225 -0.6980 -1.1954 11 6 1.1537 -1.1102 -2.1702 12 1 0.1394 -1.3766 -1.9122 13 6 1.5767 -1.1858 -3.4902 14 7 2.6892 -0.5876 -3.8600 15 14 0.5669 -2.1365 -4.7417 16 1 -0.4241 -1.2275 -5.3715 17 1 1.4661 -2.6888 -5.7864 18 1 -0.1439 -3.2490 -4.0617 19 1 -0.3633 0.5137 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.7660 -0.1643 2.1370 23 1 1.6030 -1.7238 1.2934 24 1 5.0135 -1.6064 2.3683 25 1 5.0412 -1.7698 -0.1016 26 1 3.4988 -2.6530 -0.0017 27 1 3.9903 0.0003 -1.4317 28 1 3.6541 -1.5733 -2.1955 29 1 2.9850 -0.6407 -4.7823 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306708678.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:01 Heat of formation + Delta-G solvation = -62.430168 kcal Electronic energy + Delta-G solvation = -12012.614048 eV Core-core repulsion = 9934.950523 eV Total energy + Delta-G solvation = -2077.663525 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.85581 -37.21159 -34.40858 -33.03088 -31.30831 -27.96329 -26.61831 -23.70889 -22.37998 -20.88491 -18.35465 -17.97522 -17.09754 -15.89397 -15.68050 -15.28868 -15.00920 -14.65371 -14.08914 -13.35361 -12.99273 -12.89186 -12.69920 -12.52759 -12.40121 -12.27885 -11.83514 -11.72403 -11.50974 -11.14768 -10.73917 -10.48349 -8.64622 -7.85932 -5.31831 1.46468 1.48056 1.57365 2.51840 3.24907 3.41105 3.60810 4.00947 4.07708 4.31264 4.36275 4.57219 4.72874 4.78560 4.85958 5.00561 5.07421 5.14773 5.19857 5.39261 5.49462 5.53143 5.70812 5.73425 6.42541 6.92751 7.16886 7.87854 8.40567 9.21614 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.053201 B = 0.013733 C = 0.011981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.178298 B = 2038.443732 C = 2336.451360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.160 3.840 3 H 0.021 0.979 4 C -0.112 4.112 5 C 0.116 3.884 6 H 0.053 0.947 7 O -0.581 6.581 8 C -0.159 4.159 9 C 0.178 3.822 10 N -0.607 5.607 11 C -0.254 4.254 12 H 0.073 0.927 13 C -0.054 4.054 14 N -0.937 5.937 15 Si 0.964 3.036 16 H -0.284 1.284 17 H -0.294 1.294 18 H -0.272 1.272 19 H 0.076 0.924 20 H 0.044 0.956 21 H 0.048 0.952 22 H 0.079 0.921 23 H 0.053 0.947 24 H 0.391 0.609 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.000 1.000 28 H 0.054 0.946 29 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.874 -0.642 8.376 8.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.054 3.946 3 H 0.038 0.962 4 C -0.151 4.151 5 C 0.057 3.943 6 H 0.070 0.930 7 O -0.389 6.389 8 C -0.198 4.198 9 C 0.052 3.948 10 N -0.332 5.332 11 C -0.384 4.384 12 H 0.091 0.909 13 C -0.249 4.249 14 N -0.584 5.584 15 Si 0.792 3.208 16 H -0.211 1.211 17 H -0.220 1.220 18 H -0.196 1.196 19 H 0.095 0.905 20 H 0.063 0.937 21 H 0.067 0.933 22 H 0.097 0.903 23 H 0.072 0.928 24 H 0.240 0.760 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.018 0.982 28 H 0.072 0.928 29 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.289 -0.642 8.370 8.400 hybrid contribution 0.387 -0.338 -1.281 1.380 sum 0.676 -0.980 7.089 7.189 Atomic orbital electron populations 1.21718 0.94234 1.01380 1.01224 1.20631 0.94615 0.93132 0.86173 0.96173 1.21936 0.93734 1.01043 0.98426 1.21608 0.94999 0.94113 0.83540 0.92951 1.86440 1.28537 1.82175 1.41772 1.22728 1.00650 0.99621 0.96812 1.20526 0.83485 0.95915 0.94874 1.44444 1.03130 1.65807 1.19780 1.19497 0.95573 1.36641 0.86712 0.90931 1.25846 0.99215 1.00951 0.98842 1.70170 1.25765 1.45773 1.16671 0.85331 0.77888 0.78780 0.78801 1.21072 1.22032 1.19647 0.90528 0.93705 0.93288 0.90259 0.92823 0.75993 0.90564 0.93204 0.98155 0.92763 0.94256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 7.95 71.98 0.57 -4.20 15 2 C 0.16 6.69 3.49 44.98 0.16 6.85 15 3 H 0.02 0.88 8.14 -2.39 -0.02 0.86 15 4 C -0.11 -4.06 5.02 30.67 0.15 -3.90 15 5 C 0.12 3.98 3.43 30.62 0.11 4.09 15 6 H 0.05 1.75 8.14 -2.39 -0.02 1.73 15 7 O -0.58 -17.41 13.32 -148.98 -1.98 -19.39 15 8 C -0.16 -6.07 5.70 30.67 0.17 -5.89 15 9 C 0.18 8.67 5.27 86.36 0.46 9.13 15 10 N -0.61 -30.72 2.99 -675.12 -2.02 -32.74 15 11 C -0.25 -13.90 8.57 84.03 0.72 -13.18 15 12 H 0.07 3.84 6.23 -2.91 -0.02 3.83 15 13 C -0.05 -3.01 4.94 84.86 0.42 -2.59 15 14 N -0.94 -55.71 11.23 21.65 0.24 -55.47 15 15 Si 0.96 45.11 29.58 68.60 2.03 47.14 15 16 H -0.28 -13.05 7.11 99.48 0.71 -12.35 15 17 H -0.29 -13.82 7.11 99.48 0.71 -13.12 15 18 H -0.27 -12.22 7.11 99.48 0.71 -11.51 15 19 H 0.08 2.26 8.14 -2.39 -0.02 2.24 15 20 H 0.04 1.80 7.64 -2.39 -0.02 1.78 15 21 H 0.05 1.85 7.42 -2.39 -0.02 1.84 15 22 H 0.08 2.49 8.14 -2.39 -0.02 2.47 15 23 H 0.05 2.05 8.14 -2.39 -0.02 2.03 15 24 H 0.39 7.95 9.08 -74.06 -0.67 7.28 15 25 H 0.08 2.47 8.14 -2.39 -0.02 2.45 15 26 H 0.05 2.02 8.14 -2.39 -0.02 2.00 15 27 H 0.00 0.02 8.14 -2.39 -0.02 0.00 15 28 H 0.05 2.99 6.16 -2.39 -0.01 2.97 15 29 H 0.25 14.32 8.31 -92.71 -0.77 13.55 15 Total: -1.00 -63.58 232.82 1.48 -62.10 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.45 Total: 8.06 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 2.76 Total: -9.70 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -1.78 Total: -88.20 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -1.98 Total: -19.39 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -63.58 1.48 -62.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306708678.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.332 kcal (2) G-P(sol) polarization free energy of solvation -63.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds