Wall clock time and date at job start Mon Mar 30 2020 02:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.45669 * 2 1 4 4 C 1.53033 * 109.46981 * 240.02351 * 2 1 3 5 5 C 1.53118 * 109.28304 * 180.80414 * 4 2 1 6 6 C 1.53118 * 109.15958 * 57.65445 * 5 4 2 7 7 O 1.42905 * 109.50495 * 62.32631 * 6 5 4 8 8 C 1.50694 * 109.50531 * 182.40368 * 6 5 4 9 9 H 1.08002 * 120.00269 * 0.10545 * 8 6 5 10 10 C 1.37883 * 120.00420 * 180.09898 * 8 6 5 11 11 N 1.31514 * 120.00094 * 202.97888 * 10 8 6 12 12 Si 1.86799 * 119.99522 * 22.97992 * 10 8 6 13 13 H 1.48504 * 109.46807 * 179.97438 * 12 10 8 14 14 H 1.48496 * 109.47430 * 59.99797 * 12 10 8 15 15 H 1.48498 * 109.47188 * 299.99922 * 12 10 8 16 16 C 1.53039 * 109.27998 * 302.34561 * 6 5 4 17 17 N 1.46851 * 109.52347 * 59.17942 * 16 6 5 18 18 H 1.09001 * 109.46907 * 179.97438 * 1 2 3 19 19 H 1.08992 * 109.47689 * 299.97460 * 1 2 3 20 20 H 1.09003 * 109.46577 * 59.98248 * 1 2 3 21 21 H 1.09003 * 109.50044 * 60.86125 * 4 2 1 22 22 H 1.09008 * 109.53368 * 300.76752 * 4 2 1 23 23 H 1.08994 * 109.52302 * 297.75085 * 5 4 2 24 24 H 1.08997 * 109.57726 * 177.58992 * 5 4 2 25 25 H 0.96694 * 114.00415 * 187.56927 * 7 6 5 26 26 H 0.96994 * 120.00020 * 354.91245 * 11 10 8 27 27 H 1.08998 * 109.46481 * 179.19054 * 16 6 5 28 28 H 1.08998 * 109.46377 * 299.16309 * 16 6 5 29 29 H 1.00898 * 110.99900 * 62.35041 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0401 -0.7209 -1.2498 5 6 3.5711 -0.7360 -1.2354 6 6 4.0549 -1.4187 0.0470 7 8 3.6069 -2.7756 0.0633 8 6 5.5606 -1.3853 0.0975 9 1 6.1177 -0.9222 -0.7035 10 6 6.2272 -1.9460 1.1663 11 7 7.4465 -1.5511 1.4614 12 14 5.3984 -3.2666 2.1951 13 1 6.3193 -3.7030 3.2754 14 1 5.0624 -4.4278 1.3328 15 1 4.1551 -2.7193 2.7949 16 6 3.4865 -0.6775 1.2593 17 7 2.0193 -0.6916 1.1995 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3634 0.5134 0.8901 20 1 -0.3632 0.5141 -0.8899 21 1 1.6896 -0.1982 -2.1398 22 1 1.6660 -1.7448 -1.2582 23 1 3.9458 0.2870 -1.2670 24 1 3.9391 -1.2856 -2.1017 25 1 3.7768 -3.2359 0.8965 26 1 7.9047 -0.9200 0.8847 27 1 3.8174 -1.1697 2.1738 28 1 3.8403 0.3534 1.2534 29 1 1.6647 -1.6352 1.2426 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306748071.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:06 Heat of formation + Delta-G solvation = -52.810106 kcal Electronic energy + Delta-G solvation = -12235.685490 eV Core-core repulsion = 10158.439122 eV Total energy + Delta-G solvation = -2077.246368 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.85576 -35.22016 -32.51074 -30.98752 -30.70656 -26.95158 -23.48543 -22.86948 -20.66705 -19.39613 -17.65579 -16.22810 -15.00418 -14.34808 -14.19651 -13.68514 -13.39786 -12.82241 -12.60914 -12.03647 -11.82463 -11.52499 -11.14363 -10.97937 -10.62185 -10.29353 -10.23337 -10.07223 -9.79975 -9.27105 -9.01690 -8.23601 -7.50347 -6.60094 -4.25473 3.13611 3.27358 3.46799 4.28695 4.84635 4.99012 5.24967 5.49557 5.53602 5.71199 5.80149 5.95250 6.09714 6.13333 6.24597 6.31936 6.40976 6.54200 6.74580 6.84526 7.00681 7.13795 7.54551 7.92242 8.06161 8.22932 8.67980 8.75629 9.44464 10.74535 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.058915 B = 0.015580 C = 0.014424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.145314 B = 1796.740677 C = 1940.681468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.082 3.918 3 H 0.073 0.927 4 C -0.149 4.149 5 C -0.089 4.089 6 C 0.190 3.810 7 O -0.579 6.579 8 C -0.625 4.625 9 H 0.061 0.939 10 C 0.035 3.965 11 N -0.888 5.888 12 Si 1.038 2.962 13 H -0.287 1.287 14 H -0.277 1.277 15 H -0.270 1.270 16 C 0.025 3.975 17 N -0.686 5.686 18 H 0.050 0.950 19 H 0.057 0.943 20 H 0.053 0.947 21 H 0.051 0.949 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.341 0.659 26 H 0.271 0.729 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.551 0.976 -1.240 10.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 H 0.091 0.909 4 C -0.189 4.189 5 C -0.126 4.126 6 C 0.149 3.851 7 O -0.390 6.390 8 C -0.663 4.663 9 H 0.079 0.921 10 C -0.173 4.173 11 N -0.521 5.521 12 Si 0.869 3.131 13 H -0.214 1.214 14 H -0.205 1.205 15 H -0.198 1.198 16 C -0.104 4.104 17 N -0.315 5.315 18 H 0.070 0.930 19 H 0.077 0.923 20 H 0.072 0.928 21 H 0.070 0.930 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.192 0.808 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.591 0.773 -0.080 10.619 hybrid contribution 0.428 0.195 -1.637 1.703 sum -10.163 0.968 -1.716 10.352 Atomic orbital electron populations 1.21786 0.95296 1.01529 1.01238 1.21510 0.94239 0.98178 0.88889 0.90921 1.22290 0.97551 1.00907 0.98104 1.21362 0.93301 0.99630 0.98343 1.19889 0.93934 0.79093 0.92153 1.86568 1.85075 1.27832 1.39557 1.22350 0.90826 1.42905 1.10184 0.92077 1.25777 0.96809 0.98183 0.96503 1.70837 1.14907 1.31149 1.35165 0.84369 0.75579 0.76948 0.76192 1.21377 1.20475 1.19800 1.23130 0.85366 1.02063 0.99835 1.60901 1.10501 1.21872 1.38192 0.93043 0.92343 0.92793 0.93005 0.91745 0.92038 0.92474 0.80790 0.91835 0.90671 0.90880 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.47 37.16 0.35 -1.55 15 2 C 0.08 1.39 3.03 -67.72 -0.21 1.18 15 3 H 0.07 1.24 8.14 -51.93 -0.42 0.82 15 4 C -0.15 -2.66 5.20 -26.65 -0.14 -2.80 15 5 C -0.09 -1.91 4.95 -26.61 -0.13 -2.04 15 6 C 0.19 4.58 0.68 -91.69 -0.06 4.52 15 7 O -0.58 -14.00 11.54 -35.23 -0.41 -14.41 15 8 C -0.62 -17.65 8.64 -34.44 -0.30 -17.95 15 9 H 0.06 1.86 7.99 -52.49 -0.42 1.44 15 10 C 0.03 0.99 5.24 -17.82 -0.09 0.89 15 11 N -0.89 -26.73 13.70 55.43 0.76 -25.97 15 12 Si 1.04 24.40 23.80 -169.99 -4.05 20.36 15 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 14 H -0.28 -6.25 6.79 56.52 0.38 -5.87 15 15 H -0.27 -5.75 5.53 56.52 0.31 -5.44 15 16 C 0.03 0.56 5.18 -3.83 -0.02 0.54 15 17 N -0.69 -13.06 6.50 -106.76 -0.69 -13.76 15 18 H 0.05 0.68 8.14 -51.93 -0.42 0.25 15 19 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 20 H 0.05 0.64 8.14 -51.93 -0.42 0.21 15 21 H 0.05 0.81 8.14 -51.93 -0.42 0.38 15 22 H 0.06 1.19 7.80 -51.92 -0.41 0.79 15 23 H 0.06 1.30 8.14 -51.93 -0.42 0.88 15 24 H 0.06 1.27 8.14 -51.93 -0.42 0.84 15 25 H 0.34 7.83 3.53 45.56 0.16 7.99 15 26 H 0.27 8.13 8.73 -40.82 -0.36 7.77 15 27 H 0.08 1.74 4.57 -51.93 -0.24 1.50 15 28 H 0.07 1.67 8.14 -51.93 -0.42 1.25 15 29 H 0.33 6.21 8.32 -39.29 -0.33 5.88 15 LS Contribution 223.43 15.07 3.37 3.37 Total: -1.00 -29.50 223.43 -5.48 -34.99 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -3.87 Total: 12.64 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -0.60 Total: -17.21 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.07 Total: -39.73 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.41 Total: -14.41 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -4.05 Total: 20.36 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -29.50 -5.48 -34.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306748071.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.825 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds