Wall clock time and date at job start Mon Mar 30 2020 02:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.45669 * 2 1 4 4 C 1.53033 * 109.46981 * 240.02351 * 2 1 3 5 5 C 1.53118 * 109.28304 * 180.80414 * 4 2 1 6 6 C 1.53118 * 109.15958 * 57.65445 * 5 4 2 7 7 O 1.42905 * 109.50495 * 62.32631 * 6 5 4 8 8 C 1.50694 * 109.50531 * 182.40368 * 6 5 4 9 9 H 1.08002 * 120.00269 * 0.10545 * 8 6 5 10 10 C 1.37883 * 120.00420 * 180.09898 * 8 6 5 11 11 N 1.31514 * 120.00094 * 202.97888 * 10 8 6 12 12 Si 1.86799 * 119.99522 * 22.97992 * 10 8 6 13 13 H 1.48504 * 109.46807 * 179.97438 * 12 10 8 14 14 H 1.48496 * 109.47430 * 59.99797 * 12 10 8 15 15 H 1.48498 * 109.47188 * 299.99922 * 12 10 8 16 16 C 1.53039 * 109.27998 * 302.34561 * 6 5 4 17 17 N 1.46851 * 109.52347 * 59.17942 * 16 6 5 18 18 H 1.09001 * 109.46907 * 179.97438 * 1 2 3 19 19 H 1.08992 * 109.47689 * 299.97460 * 1 2 3 20 20 H 1.09003 * 109.46577 * 59.98248 * 1 2 3 21 21 H 1.09003 * 109.50044 * 60.86125 * 4 2 1 22 22 H 1.09008 * 109.53368 * 300.76752 * 4 2 1 23 23 H 1.08994 * 109.52302 * 297.75085 * 5 4 2 24 24 H 1.08997 * 109.57726 * 177.58992 * 5 4 2 25 25 H 0.96694 * 114.00415 * 187.56927 * 7 6 5 26 26 H 0.96994 * 120.00020 * 354.91245 * 11 10 8 27 27 H 1.08998 * 109.46481 * 179.19054 * 16 6 5 28 28 H 1.08998 * 109.46377 * 299.16309 * 16 6 5 29 29 H 1.00898 * 110.99900 * 62.35041 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0401 -0.7209 -1.2498 5 6 3.5711 -0.7360 -1.2354 6 6 4.0549 -1.4187 0.0470 7 8 3.6069 -2.7756 0.0633 8 6 5.5606 -1.3853 0.0975 9 1 6.1177 -0.9222 -0.7035 10 6 6.2272 -1.9460 1.1663 11 7 7.4465 -1.5511 1.4614 12 14 5.3984 -3.2666 2.1951 13 1 6.3193 -3.7030 3.2754 14 1 5.0624 -4.4278 1.3328 15 1 4.1551 -2.7193 2.7949 16 6 3.4865 -0.6775 1.2593 17 7 2.0193 -0.6916 1.1995 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3634 0.5134 0.8901 20 1 -0.3632 0.5141 -0.8899 21 1 1.6896 -0.1982 -2.1398 22 1 1.6660 -1.7448 -1.2582 23 1 3.9458 0.2870 -1.2670 24 1 3.9391 -1.2856 -2.1017 25 1 3.7768 -3.2359 0.8965 26 1 7.9047 -0.9200 0.8847 27 1 3.8174 -1.1697 2.1738 28 1 3.8403 0.3534 1.2534 29 1 1.6647 -1.6352 1.2426 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306748071.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:06 Heat of formation + Delta-G solvation = -76.878364 kcal Electronic energy + Delta-G solvation = -12236.729168 eV Core-core repulsion = 10158.439122 eV Total energy + Delta-G solvation = -2078.290046 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.56235 -36.92720 -34.68207 -32.59425 -32.33280 -28.62072 -25.35110 -24.51760 -22.21363 -21.11468 -19.81505 -18.06068 -16.65687 -15.93354 -15.84001 -15.51327 -15.16514 -14.40339 -14.25261 -13.87936 -13.43707 -13.02681 -12.75818 -12.34824 -12.33674 -11.97901 -11.87526 -11.76747 -11.64916 -11.10315 -10.96218 -10.35136 -9.18110 -8.84185 -6.54489 1.26120 1.40501 1.60152 2.31433 2.84589 3.38644 3.59083 3.94642 4.08055 4.16057 4.30342 4.49436 4.52717 4.80208 4.86664 4.94574 4.99222 5.03524 5.21591 5.31443 5.38847 5.40095 5.74969 5.87924 6.15511 6.38101 6.56006 6.81692 7.24996 8.45626 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.058915 B = 0.015580 C = 0.014424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.145314 B = 1796.740677 C = 1940.681468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.078 3.922 3 H 0.070 0.930 4 C -0.138 4.138 5 C -0.093 4.093 6 C 0.187 3.813 7 O -0.580 6.580 8 C -0.640 4.640 9 H 0.019 0.981 10 C -0.013 4.013 11 N -0.917 5.917 12 Si 1.074 2.926 13 H -0.289 1.289 14 H -0.259 1.259 15 H -0.231 1.231 16 C 0.036 3.964 17 N -0.678 5.678 18 H 0.057 0.943 19 H 0.064 0.936 20 H 0.075 0.925 21 H 0.080 0.920 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.041 0.959 25 H 0.348 0.652 26 H 0.256 0.744 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.421 0.477 -0.833 13.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.032 4.032 3 H 0.088 0.912 4 C -0.177 4.177 5 C -0.130 4.130 6 C 0.146 3.854 7 O -0.391 6.391 8 C -0.678 4.678 9 H 0.038 0.962 10 C -0.214 4.214 11 N -0.551 5.551 12 Si 0.897 3.103 13 H -0.217 1.217 14 H -0.185 1.185 15 H -0.156 1.156 16 C -0.094 4.094 17 N -0.307 5.307 18 H 0.076 0.924 19 H 0.083 0.917 20 H 0.094 0.906 21 H 0.098 0.902 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.060 0.940 25 H 0.199 0.801 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.485 0.292 0.305 13.492 hybrid contribution 1.389 0.406 -1.865 2.360 sum -12.096 0.698 -1.560 12.217 Atomic orbital electron populations 1.21715 0.92036 1.02456 1.02708 1.21677 0.96744 0.97481 0.87332 0.91205 1.22221 0.94083 1.01425 1.00018 1.21362 0.96545 0.98703 0.96425 1.19889 0.91325 0.79621 0.94526 1.86540 1.84659 1.27708 1.40236 1.22621 0.93574 1.42528 1.09055 0.96239 1.27281 0.96606 0.99441 0.98068 1.70971 1.16217 1.32144 1.35781 0.83942 0.76329 0.74837 0.75205 1.21652 1.18525 1.15583 1.22811 0.87645 1.00728 0.98246 1.60900 1.07808 1.22443 1.39548 0.92374 0.91680 0.90621 0.90186 0.91915 0.92562 0.94007 0.80068 0.93485 0.91378 0.92149 0.84206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.47 71.98 0.68 -2.28 15 2 C 0.08 2.36 3.03 44.93 0.14 2.50 15 3 H 0.07 2.19 8.14 -2.39 -0.02 2.17 15 4 C -0.14 -4.53 5.20 30.64 0.16 -4.37 15 5 C -0.09 -3.92 4.95 30.67 0.15 -3.77 15 6 C 0.19 8.90 0.68 -11.49 -0.01 8.89 15 7 O -0.58 -26.80 11.54 -148.98 -1.72 -28.52 15 8 C -0.64 -37.07 8.64 25.60 0.22 -36.85 15 9 H 0.02 1.24 7.99 -2.91 -0.02 1.22 15 10 C -0.01 -0.76 5.24 84.66 0.44 -0.32 15 11 N -0.92 -56.88 13.70 21.45 0.29 -56.59 15 12 Si 1.07 47.99 23.80 68.60 1.63 49.62 15 13 H -0.29 -13.09 7.11 99.48 0.71 -12.38 15 14 H -0.26 -10.80 6.79 99.48 0.68 -10.12 15 15 H -0.23 -8.85 5.53 99.48 0.55 -8.30 15 16 C 0.04 1.54 5.18 86.33 0.45 1.99 15 17 N -0.68 -23.73 6.50 -491.67 -3.19 -26.93 15 18 H 0.06 1.25 8.14 -2.39 -0.02 1.23 15 19 H 0.06 1.41 8.14 -2.39 -0.02 1.39 15 20 H 0.07 1.41 8.14 -2.39 -0.02 1.39 15 21 H 0.08 2.19 8.14 -2.39 -0.02 2.17 15 22 H 0.06 2.10 7.80 -2.38 -0.02 2.08 15 23 H 0.06 2.39 8.14 -2.39 -0.02 2.37 15 24 H 0.04 1.85 8.14 -2.39 -0.02 1.83 15 25 H 0.35 14.91 3.53 -74.06 -0.26 14.65 15 26 H 0.26 16.13 8.73 -92.71 -0.81 15.32 15 27 H 0.07 3.00 4.57 -2.39 -0.01 2.99 15 28 H 0.06 2.73 8.14 -2.39 -0.02 2.71 15 29 H 0.34 11.35 8.32 -89.70 -0.75 10.61 15 Total: -1.00 -64.44 223.43 -0.85 -65.29 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: -0.09 Total: 31.33 kcal Atomic # 6 Polarization: -36.44 SS G_CDS: 2.23 Total: -34.21 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -2.90 Total: -83.52 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -1.72 Total: -28.52 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 1.63 Total: 49.62 kcal Total: -64.44 -0.85 -65.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306748071.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.587 kcal (2) G-P(sol) polarization free energy of solvation -64.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds