Wall clock time and date at job start Mon Mar 30 2020 02:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.45911 * 2 1 4 4 C 1.53029 * 109.46681 * 119.98156 * 2 1 3 5 5 C 1.53116 * 109.28386 * 179.19382 * 4 2 1 6 6 C 1.53122 * 109.15924 * 302.35168 * 5 4 2 7 7 O 1.42905 * 109.50144 * 177.59281 * 6 5 4 8 8 C 1.50698 * 109.50133 * 297.66778 * 6 5 4 9 9 H 1.08003 * 120.00069 * 359.92320 * 8 6 5 10 10 C 1.37873 * 119.99928 * 179.97438 * 8 6 5 11 11 N 1.31514 * 119.99971 * 359.97438 * 10 8 6 12 12 Si 1.86809 * 120.00063 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47133 * 89.99724 * 12 10 8 14 14 H 1.48498 * 109.47031 * 210.00074 * 12 10 8 15 15 H 1.48499 * 109.46856 * 329.99703 * 12 10 8 16 16 C 1.53037 * 109.31431 * 57.63028 * 6 5 4 17 17 N 1.46853 * 109.45882 * 240.03836 * 2 1 3 18 18 H 1.09006 * 109.46793 * 300.01624 * 1 2 3 19 19 H 1.08997 * 109.47521 * 60.01492 * 1 2 3 20 20 H 1.09001 * 109.47004 * 180.02562 * 1 2 3 21 21 H 1.09009 * 109.50443 * 59.25383 * 4 2 1 22 22 H 1.09002 * 109.53559 * 299.15885 * 4 2 1 23 23 H 1.08998 * 109.52599 * 182.44157 * 5 4 2 24 24 H 1.09001 * 109.52193 * 62.24899 * 5 4 2 25 25 H 0.96702 * 113.99404 * 180.02562 * 7 6 5 26 26 H 0.97002 * 119.99470 * 180.02562 * 11 10 8 27 27 H 1.09000 * 109.46159 * 60.85546 * 16 6 5 28 28 H 1.08996 * 109.45913 * 180.82444 * 16 6 5 29 29 H 1.00895 * 111.00148 * 54.14404 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0400 -0.7210 1.2497 5 6 3.5710 -0.7362 1.2354 6 6 4.0548 -1.4187 -0.0471 7 8 5.4827 -1.3870 -0.0949 8 6 3.5824 -2.8496 -0.0645 9 1 2.9969 -3.2350 0.7571 10 6 3.8987 -3.6671 -1.1288 11 7 4.6121 -3.1979 -2.1290 12 14 3.3125 -5.4407 -1.1507 13 1 1.9836 -5.5147 -1.8092 14 1 4.2848 -6.2741 -1.9026 15 1 3.2033 -5.9431 0.2425 16 6 3.4865 -0.6782 -1.2599 17 7 2.0192 -0.6915 -1.1996 18 1 -0.3633 0.5141 0.8899 19 1 -0.3634 0.5136 -0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 1.6660 -1.7449 1.2573 22 1 1.6896 -0.1990 2.1402 23 1 3.9380 -1.2866 2.1017 24 1 3.9458 0.2869 1.2671 25 1 5.8591 -1.8026 -0.8828 26 1 4.8342 -3.7730 -2.8779 27 1 3.8403 0.3527 -1.2545 28 1 3.8175 -1.1709 -2.1740 29 1 1.6195 -0.2922 -2.0355 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306748073.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:07 Heat of formation + Delta-G solvation = -80.612094 kcal Electronic energy + Delta-G solvation = -12238.447033 eV Core-core repulsion = 10159.995081 eV Total energy + Delta-G solvation = -2078.451952 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.96717 -36.73602 -34.03578 -32.64643 -31.95860 -27.91572 -26.09329 -24.30146 -22.11195 -20.52205 -18.48978 -17.36179 -17.00629 -15.83417 -15.63960 -14.97488 -14.80849 -14.42807 -13.72678 -13.66843 -13.13667 -12.84965 -12.76252 -12.42411 -12.34972 -12.20871 -11.97731 -11.55348 -11.43716 -10.79591 -10.47533 -10.12105 -8.96175 -8.05482 -6.16411 1.44165 1.45734 1.53859 2.47859 3.16056 3.49819 4.05137 4.08591 4.22780 4.46883 4.61367 4.69020 4.74269 4.90533 4.99610 5.04575 5.13182 5.22280 5.37326 5.45951 5.52788 5.68877 6.03842 6.26250 6.48513 6.78634 6.86213 7.44760 7.54563 8.97718 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.040193 B = 0.017407 C = 0.015079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.467695 B = 1608.146879 C = 1856.443314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.082 3.918 3 H 0.025 0.975 4 C -0.094 4.094 5 C -0.101 4.101 6 C 0.230 3.770 7 O -0.607 6.607 8 C -0.510 4.510 9 H 0.047 0.953 10 C 0.029 3.971 11 N -0.922 5.922 12 Si 0.954 3.046 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.277 1.277 16 C 0.057 3.943 17 N -0.670 5.670 18 H 0.076 0.924 19 H 0.061 0.939 20 H 0.053 0.947 21 H 0.059 0.941 22 H 0.081 0.919 23 H 0.046 0.954 24 H 0.042 0.958 25 H 0.376 0.624 26 H 0.264 0.736 27 H -0.014 1.014 28 H 0.079 0.921 29 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.404 4.667 2.125 8.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.028 4.028 3 H 0.043 0.957 4 C -0.132 4.132 5 C -0.139 4.139 6 C 0.191 3.809 7 O -0.416 6.416 8 C -0.548 4.548 9 H 0.065 0.935 10 C -0.169 4.169 11 N -0.565 5.565 12 Si 0.781 3.219 13 H -0.205 1.205 14 H -0.211 1.211 15 H -0.202 1.202 16 C -0.073 4.073 17 N -0.302 5.302 18 H 0.095 0.905 19 H 0.080 0.920 20 H 0.072 0.928 21 H 0.077 0.923 22 H 0.100 0.900 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.225 0.775 26 H 0.073 0.927 27 H 0.004 0.996 28 H 0.097 0.903 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.431 4.297 2.845 8.241 hybrid contribution 0.328 -0.374 -1.070 1.180 sum -6.104 3.922 1.775 7.469 Atomic orbital electron populations 1.21729 0.92622 1.02198 1.02463 1.21543 0.96285 0.93925 0.91059 0.95664 1.21483 0.93470 1.01127 0.97143 1.21458 0.96800 0.98179 0.97434 1.18954 0.77567 0.93375 0.91000 1.86111 1.23661 1.82772 1.49012 1.21606 1.32273 0.96452 1.04509 0.93502 1.25509 0.94830 1.01818 0.94763 1.69628 1.40260 1.37004 1.09568 0.85637 0.77924 0.80692 0.77669 1.20513 1.21062 1.20175 1.22351 0.87675 0.94411 1.02879 1.60053 1.07037 1.58956 1.04192 0.90484 0.91975 0.92819 0.92257 0.90006 0.93540 0.93942 0.77487 0.92655 0.99631 0.90302 0.84919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 9.43 71.98 0.68 -2.92 15 2 C 0.08 2.86 3.04 44.93 0.14 3.00 15 3 H 0.03 0.87 8.14 -2.39 -0.02 0.85 15 4 C -0.09 -3.55 5.11 30.64 0.16 -3.40 15 5 C -0.10 -4.50 5.12 30.67 0.16 -4.35 15 6 C 0.23 11.87 0.85 -11.49 -0.01 11.86 15 7 O -0.61 -33.39 12.97 -148.98 -1.93 -35.32 15 8 C -0.51 -28.05 7.17 25.60 0.18 -27.86 15 9 H 0.05 2.61 6.87 -2.91 -0.02 2.59 15 10 C 0.03 1.55 5.22 84.65 0.44 1.99 15 11 N -0.92 -50.52 9.69 21.45 0.21 -50.31 15 12 Si 0.95 44.10 29.54 68.60 2.03 46.12 15 13 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 14 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 15 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 16 C 0.06 2.74 5.41 86.32 0.47 3.21 15 17 N -0.67 -27.85 6.11 -491.67 -3.00 -30.86 15 18 H 0.08 1.71 8.14 -2.38 -0.02 1.69 15 19 H 0.06 1.49 8.14 -2.39 -0.02 1.47 15 20 H 0.05 1.57 8.14 -2.39 -0.02 1.55 15 21 H 0.06 2.46 6.83 -2.38 -0.02 2.44 15 22 H 0.08 2.49 8.14 -2.39 -0.02 2.47 15 23 H 0.05 2.09 8.14 -2.39 -0.02 2.07 15 24 H 0.04 1.80 8.14 -2.39 -0.02 1.78 15 25 H 0.38 20.91 7.15 -74.06 -0.53 20.38 15 26 H 0.26 13.88 8.31 -92.71 -0.77 13.11 15 27 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 15 28 H 0.08 4.20 6.06 -2.39 -0.01 4.19 15 29 H 0.33 12.25 8.79 -89.70 -0.79 11.47 15 Total: -1.00 -59.05 230.10 -0.66 -59.71 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: -0.17 Total: 29.12 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 2.21 Total: -18.47 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: -2.80 Total: -81.17 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -1.93 Total: -35.32 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -59.05 -0.66 -59.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306748073.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.900 kcal (2) G-P(sol) polarization free energy of solvation -59.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds