Wall clock time and date at job start Mon Mar 30 2020 01:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.82062 * 2 1 4 4 O 1.43234 * 109.82771 * 120.88071 * 2 1 3 5 5 C 1.43647 * 109.97053 * 121.22857 * 4 2 1 6 6 C 1.54947 * 105.13670 * 335.57284 * 5 4 2 7 7 C 1.54429 * 109.79427 * 239.01591 * 2 1 3 8 8 H 1.09001 * 110.83577 * 143.62180 * 7 2 1 9 9 N 1.46504 * 110.88894 * 19.98775 * 7 2 1 10 10 C 1.36941 * 120.00168 * 160.71846 * 9 7 2 11 11 H 1.07998 * 120.00001 * 0.02562 * 10 9 7 12 12 C 1.38807 * 119.99864 * 179.97438 * 10 9 7 13 13 N 1.31623 * 120.00189 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00121 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46895 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46986 * 119.99907 * 14 12 10 17 17 H 1.48495 * 109.47451 * 240.00066 * 14 12 10 18 18 H 1.08998 * 109.47650 * 300.57065 * 1 2 3 19 19 H 1.09002 * 109.47271 * 60.57574 * 1 2 3 20 20 H 1.09001 * 109.46927 * 180.56736 * 1 2 3 21 21 H 1.09002 * 109.47060 * 179.43379 * 3 2 1 22 22 H 1.09007 * 109.46900 * 299.42675 * 3 2 1 23 23 H 1.08997 * 109.47481 * 59.42634 * 3 2 1 24 24 H 1.08998 * 110.31511 * 216.65683 * 5 4 2 25 25 H 1.09007 * 110.31140 * 94.48453 * 5 4 2 26 26 H 1.09002 * 111.12777 * 154.36349 * 6 5 4 27 27 H 1.08995 * 111.12300 * 278.48242 * 6 5 4 28 28 H 0.97005 * 119.99752 * 340.72629 * 9 7 2 29 29 H 0.97000 * 120.00214 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4394 0.0000 4 8 2.0158 -0.6916 1.1564 5 6 2.8407 -1.7974 0.7562 6 6 2.3682 -2.1575 -0.6748 7 6 2.0530 -0.7480 -1.2457 8 1 2.9560 -0.2748 -1.6314 9 7 1.0196 -0.8242 -2.2814 10 6 1.3696 -1.0791 -3.5805 11 1 2.4074 -1.2244 -3.8416 12 6 0.3904 -1.1518 -4.5616 13 7 -0.8745 -0.9752 -4.2434 14 14 0.8677 -1.5002 -6.3337 15 1 2.3412 -1.6593 -6.4272 16 1 0.2056 -2.7494 -6.7882 17 1 0.4358 -0.3697 -7.1942 18 1 -0.3634 0.5226 0.8848 19 1 -0.3634 0.5049 -0.8951 20 1 -0.3633 -1.0276 0.0102 21 1 3.1387 1.4327 0.0102 22 1 1.6970 1.9524 -0.8952 23 1 1.6803 1.9585 0.8847 24 1 2.6919 -2.6430 1.4277 25 1 3.8900 -1.5022 0.7450 26 1 3.1638 -2.6419 -1.2411 27 1 1.4736 -2.7797 -0.6482 28 1 0.0873 -0.6939 -2.0468 29 1 -1.5588 -1.0256 -4.9291 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306893669.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:33 Heat of formation + Delta-G solvation = -37.842712 kcal Electronic energy + Delta-G solvation = -11913.910331 eV Core-core repulsion = 9837.312998 eV Total energy + Delta-G solvation = -2076.597333 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.36386 -34.54816 -32.32393 -31.36762 -29.00912 -26.88997 -24.99916 -23.19356 -20.90575 -18.97442 -17.41608 -15.58725 -15.51302 -14.58691 -14.18736 -13.41822 -13.31266 -12.86030 -12.31991 -12.08425 -11.62222 -11.47717 -11.18370 -10.96652 -10.87330 -10.63677 -10.42880 -10.13983 -9.82372 -9.65628 -9.07984 -8.91114 -7.00663 -5.81767 -3.10999 3.40583 3.46380 3.48588 4.28824 4.55390 5.19473 5.36306 5.46491 5.57163 5.58421 5.68160 5.81256 6.01861 6.11694 6.18902 6.24896 6.36201 6.38546 6.46268 6.62247 6.71407 6.79556 7.00401 7.59140 7.67668 8.37200 9.48677 10.04420 10.39977 11.40953 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.058950 B = 0.011728 C = 0.010955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.863138 B = 2386.912261 C = 2555.183067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.091 3.909 3 C -0.146 4.146 4 O -0.382 6.382 5 C 0.050 3.950 6 C -0.178 4.178 7 C 0.159 3.841 8 H 0.061 0.939 9 N -0.716 5.716 10 C -0.242 4.242 11 H 0.071 0.929 12 C -0.012 4.012 13 N -0.932 5.932 14 Si 0.908 3.092 15 H -0.280 1.280 16 H -0.291 1.291 17 H -0.291 1.291 18 H 0.050 0.950 19 H 0.080 0.920 20 H 0.059 0.941 21 H 0.053 0.947 22 H 0.069 0.931 23 H 0.053 0.947 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.391 0.609 29 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.239 0.909 7.457 9.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.051 3.949 3 C -0.204 4.204 4 O -0.302 6.302 5 C -0.027 4.027 6 C -0.219 4.219 7 C 0.047 3.953 8 H 0.079 0.921 9 N -0.360 5.360 10 C -0.373 4.373 11 H 0.089 0.911 12 C -0.208 4.208 13 N -0.580 5.580 14 Si 0.739 3.261 15 H -0.205 1.205 16 H -0.218 1.218 17 H -0.218 1.218 18 H 0.069 0.931 19 H 0.099 0.901 20 H 0.078 0.922 21 H 0.072 0.928 22 H 0.088 0.912 23 H 0.072 0.928 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.229 0.771 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.247 0.954 7.483 9.189 hybrid contribution 0.001 -0.358 -1.146 1.201 sum 5.248 0.596 6.336 8.249 Atomic orbital electron populations 1.21974 0.94172 1.02614 1.01879 1.22272 0.94522 0.92144 0.85945 1.22017 1.00782 0.95582 1.01980 1.88364 1.67286 1.43818 1.30688 1.23243 0.93969 0.89121 0.96337 1.23956 1.01803 1.01415 0.94718 1.21699 0.93186 0.91896 0.88513 0.92077 1.42653 1.04979 1.84960 1.03451 1.19305 0.92982 1.40680 0.84367 0.91115 1.24753 0.95285 1.02612 0.98191 1.69668 0.99106 1.56573 1.32675 0.86102 0.77497 0.77491 0.84997 1.20548 1.21833 1.21800 0.93102 0.90129 0.92168 0.92824 0.91170 0.92759 0.90859 0.93110 0.91060 0.90644 0.77133 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 7.60 37.16 0.28 -2.49 15 2 C 0.09 1.69 1.26 -89.87 -0.11 1.57 15 3 C -0.15 -2.40 8.75 37.16 0.33 -2.08 15 4 O -0.38 -6.96 10.68 -35.23 -0.38 -7.34 15 5 C 0.05 0.81 7.78 38.19 0.30 1.10 15 6 C -0.18 -3.30 6.84 -24.48 -0.17 -3.47 15 7 C 0.16 3.28 3.05 -65.96 -0.20 3.08 15 8 H 0.06 1.27 7.84 -51.93 -0.41 0.86 15 9 N -0.72 -17.91 5.03 -51.52 -0.26 -18.17 15 10 C -0.24 -6.67 9.98 -15.06 -0.15 -6.82 15 11 H 0.07 1.90 7.83 -52.49 -0.41 1.48 15 12 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 15 13 N -0.93 -27.82 13.06 55.49 0.72 -27.09 15 14 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 15 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 15 18 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 19 H 0.08 1.62 6.74 -51.93 -0.35 1.27 15 20 H 0.06 1.17 8.04 -51.93 -0.42 0.75 15 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.07 1.18 8.14 -51.92 -0.42 0.76 15 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.07 1.04 8.14 -51.93 -0.42 0.61 15 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 15 27 H 0.07 1.50 8.14 -51.93 -0.42 1.08 15 28 H 0.39 10.18 4.92 -40.82 -0.20 9.98 15 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 LS Contribution 239.20 15.07 3.60 3.60 Total: -1.00 -29.49 239.20 -5.46 -34.95 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -4.30 Total: 6.43 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 0.18 Total: -9.55 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.47 Total: -45.26 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.38 Total: -7.34 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.49 -5.46 -34.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306893669.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.893 kcal (2) G-P(sol) polarization free energy of solvation -29.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds