Wall clock time and date at job start Mon Mar 30 2020 01:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.82062 * 2 1 4 4 O 1.43234 * 109.82771 * 120.88071 * 2 1 3 5 5 C 1.43647 * 109.97053 * 121.22857 * 4 2 1 6 6 C 1.54947 * 105.13670 * 335.57284 * 5 4 2 7 7 C 1.54429 * 109.79427 * 239.01591 * 2 1 3 8 8 H 1.09001 * 110.83577 * 143.62180 * 7 2 1 9 9 N 1.46504 * 110.88894 * 19.98775 * 7 2 1 10 10 C 1.36941 * 120.00168 * 160.71846 * 9 7 2 11 11 H 1.07998 * 120.00001 * 0.02562 * 10 9 7 12 12 C 1.38807 * 119.99864 * 179.97438 * 10 9 7 13 13 N 1.31623 * 120.00189 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00121 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46895 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46986 * 119.99907 * 14 12 10 17 17 H 1.48495 * 109.47451 * 240.00066 * 14 12 10 18 18 H 1.08998 * 109.47650 * 300.57065 * 1 2 3 19 19 H 1.09002 * 109.47271 * 60.57574 * 1 2 3 20 20 H 1.09001 * 109.46927 * 180.56736 * 1 2 3 21 21 H 1.09002 * 109.47060 * 179.43379 * 3 2 1 22 22 H 1.09007 * 109.46900 * 299.42675 * 3 2 1 23 23 H 1.08997 * 109.47481 * 59.42634 * 3 2 1 24 24 H 1.08998 * 110.31511 * 216.65683 * 5 4 2 25 25 H 1.09007 * 110.31140 * 94.48453 * 5 4 2 26 26 H 1.09002 * 111.12777 * 154.36349 * 6 5 4 27 27 H 1.08995 * 111.12300 * 278.48242 * 6 5 4 28 28 H 0.97005 * 119.99752 * 340.72629 * 9 7 2 29 29 H 0.97000 * 120.00214 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4394 0.0000 4 8 2.0158 -0.6916 1.1564 5 6 2.8407 -1.7974 0.7562 6 6 2.3682 -2.1575 -0.6748 7 6 2.0530 -0.7480 -1.2457 8 1 2.9560 -0.2748 -1.6314 9 7 1.0196 -0.8242 -2.2814 10 6 1.3696 -1.0791 -3.5805 11 1 2.4074 -1.2244 -3.8416 12 6 0.3904 -1.1518 -4.5616 13 7 -0.8745 -0.9752 -4.2434 14 14 0.8677 -1.5002 -6.3337 15 1 2.3412 -1.6593 -6.4272 16 1 0.2056 -2.7494 -6.7882 17 1 0.4358 -0.3697 -7.1942 18 1 -0.3634 0.5226 0.8848 19 1 -0.3634 0.5049 -0.8951 20 1 -0.3633 -1.0276 0.0102 21 1 3.1387 1.4327 0.0102 22 1 1.6970 1.9524 -0.8952 23 1 1.6803 1.9585 0.8847 24 1 2.6919 -2.6430 1.4277 25 1 3.8900 -1.5022 0.7450 26 1 3.1638 -2.6419 -1.2411 27 1 1.4736 -2.7797 -0.6482 28 1 0.0873 -0.6939 -2.0468 29 1 -1.5588 -1.0256 -4.9291 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306893669.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:33 Heat of formation + Delta-G solvation = -57.395054 kcal Electronic energy + Delta-G solvation = -11914.758184 eV Core-core repulsion = 9837.312998 eV Total energy + Delta-G solvation = -2077.445186 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.84599 -36.36529 -33.98544 -33.05336 -30.78331 -28.33919 -26.69758 -25.00443 -22.41886 -20.52203 -19.40014 -17.14983 -17.11007 -16.24863 -15.92632 -15.19534 -14.88103 -14.33420 -13.86958 -13.70086 -13.19204 -13.03138 -12.87491 -12.76180 -12.58507 -12.07483 -12.06152 -12.02746 -11.63608 -11.37450 -10.92692 -10.43622 -9.03089 -7.96299 -5.25422 1.47773 1.48014 1.58144 2.54251 2.89035 3.35432 3.71419 3.91047 3.98289 4.13248 4.30522 4.35179 4.50363 4.70514 4.77638 4.81674 4.95654 4.96683 4.99756 5.14519 5.27193 5.32779 5.41871 5.52232 6.17770 6.26752 7.32938 8.06077 8.31298 9.27413 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.058950 B = 0.011728 C = 0.010955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.863138 B = 2386.912261 C = 2555.183067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.094 3.906 3 C -0.142 4.142 4 O -0.389 6.389 5 C 0.054 3.946 6 C -0.174 4.174 7 C 0.146 3.854 8 H 0.062 0.938 9 N -0.729 5.729 10 C -0.242 4.242 11 H 0.076 0.924 12 C -0.074 4.074 13 N -0.969 5.969 14 Si 0.974 3.026 15 H -0.266 1.266 16 H -0.294 1.294 17 H -0.293 1.293 18 H 0.072 0.928 19 H 0.060 0.940 20 H 0.044 0.956 21 H 0.066 0.934 22 H 0.059 0.941 23 H 0.071 0.929 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.382 0.618 29 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.721 0.908 8.127 10.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.054 3.946 3 C -0.199 4.199 4 O -0.308 6.308 5 C -0.022 4.022 6 C -0.215 4.215 7 C 0.037 3.963 8 H 0.080 0.920 9 N -0.373 5.373 10 C -0.374 4.374 11 H 0.094 0.906 12 C -0.267 4.267 13 N -0.619 5.619 14 Si 0.803 3.197 15 H -0.190 1.190 16 H -0.222 1.222 17 H -0.220 1.220 18 H 0.091 0.909 19 H 0.079 0.921 20 H 0.063 0.937 21 H 0.085 0.915 22 H 0.078 0.922 23 H 0.090 0.910 24 H 0.115 0.885 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.219 0.781 29 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.778 0.949 8.184 10.669 hybrid contribution -0.416 -0.371 -1.275 1.392 sum 6.362 0.578 6.908 9.409 Atomic orbital electron populations 1.21894 0.94716 1.01632 1.01868 1.22207 0.94185 0.93151 0.85025 1.21975 1.01586 0.94039 1.02341 1.88349 1.67805 1.44406 1.30271 1.23396 0.94758 0.89274 0.94761 1.23827 1.01334 0.99611 0.96712 1.21944 0.92181 0.93650 0.88568 0.92019 1.42805 1.05566 1.85132 1.03748 1.19669 0.93143 1.39009 0.85566 0.90601 1.25555 0.95343 1.03592 1.02164 1.69820 1.00039 1.58490 1.33598 0.85071 0.77792 0.76733 0.80131 1.19028 1.22176 1.22023 0.90915 0.92135 0.93706 0.91543 0.92151 0.91036 0.88547 0.90727 0.90278 0.92597 0.78135 0.93953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.30 7.60 71.98 0.55 -4.75 15 2 C 0.09 3.35 1.26 -10.31 -0.01 3.33 15 3 C -0.14 -4.37 8.75 71.98 0.63 -3.74 15 4 O -0.39 -13.11 10.68 -148.98 -1.59 -14.70 15 5 C 0.05 1.58 7.78 72.65 0.57 2.14 15 6 C -0.17 -6.20 6.84 32.05 0.22 -5.98 15 7 C 0.15 5.91 3.05 46.27 0.14 6.05 15 8 H 0.06 2.47 7.84 -2.39 -0.02 2.45 15 9 N -0.73 -36.67 5.03 -316.90 -1.59 -38.26 15 10 C -0.24 -13.32 9.98 84.03 0.84 -12.48 15 11 H 0.08 4.00 7.83 -2.91 -0.02 3.98 15 12 C -0.07 -4.23 5.50 84.86 0.47 -3.76 15 13 N -0.97 -58.87 13.06 21.65 0.28 -58.58 15 14 Si 0.97 45.77 29.55 68.60 2.03 47.80 15 15 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 16 H -0.29 -13.89 7.11 99.48 0.71 -13.18 15 17 H -0.29 -13.77 7.11 99.48 0.71 -13.06 15 18 H 0.07 2.31 8.14 -2.39 -0.02 2.29 15 19 H 0.06 2.47 6.74 -2.39 -0.02 2.46 15 20 H 0.04 1.75 8.04 -2.39 -0.02 1.73 15 21 H 0.07 1.85 8.14 -2.39 -0.02 1.84 15 22 H 0.06 1.96 8.14 -2.38 -0.02 1.94 15 23 H 0.07 1.94 8.14 -2.39 -0.02 1.92 15 24 H 0.10 2.38 8.14 -2.39 -0.02 2.36 15 25 H 0.07 1.85 8.14 -2.38 -0.02 1.83 15 26 H 0.08 2.65 8.14 -2.39 -0.02 2.63 15 27 H 0.06 2.20 8.14 -2.39 -0.02 2.18 15 28 H 0.38 20.36 4.92 -92.70 -0.46 19.90 15 29 H 0.25 14.79 8.31 -92.71 -0.77 14.02 15 Total: -1.00 -61.82 239.20 3.18 -58.63 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.66 Total: 24.29 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: 3.40 Total: -19.18 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -1.31 Total: -96.84 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -1.59 Total: -14.70 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -61.82 3.18 -58.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306893669.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.239 kcal (2) G-P(sol) polarization free energy of solvation -61.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds