Wall clock time and date at job start Mon Mar 30 2020 01:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99876 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31516 * 120.00079 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99984 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99475 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99550 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99718 * 8 6 4 12 12 C 1.52992 * 109.47482 * 239.99866 * 2 1 3 13 13 H 1.09001 * 110.33450 * 305.80174 * 12 2 1 14 14 C 1.54910 * 110.37282 * 68.17328 * 12 2 1 15 15 C 1.55146 * 101.65376 * 155.90293 * 14 12 2 16 16 C 1.54319 * 103.01830 * 324.34605 * 15 14 12 17 17 N 1.47444 * 107.23016 * 22.28311 * 16 15 14 18 18 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 20 20 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 21 21 H 0.96696 * 113.99968 * 179.97438 * 3 2 1 22 22 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 23 23 H 1.09008 * 110.99034 * 273.99207 * 14 12 2 24 24 H 1.08995 * 110.98997 * 37.80966 * 14 12 2 25 25 H 1.09000 * 110.70151 * 205.96539 * 15 14 12 26 26 H 1.08995 * 110.85837 * 82.80136 * 15 14 12 27 27 H 1.09001 * 109.88820 * 262.87902 * 16 15 14 28 28 H 1.08996 * 110.02103 * 141.76603 * 16 15 14 29 29 H 1.00903 * 110.99832 * 238.71512 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6542 9 1 -0.8028 0.8727 2.6998 10 1 0.9759 1.9951 3.9068 11 1 0.8471 2.1765 1.4921 12 6 2.0400 -0.7212 -1.2491 13 1 1.6026 -1.7173 -1.3165 14 6 1.7108 0.1020 -2.5194 15 6 2.7899 -0.4069 -3.5111 16 6 4.0168 -0.6346 -2.6031 17 7 3.5158 -0.8075 -1.2272 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 0.5139 0.8900 21 1 2.9703 1.4236 0.0004 22 1 1.9026 -0.5283 4.4376 23 1 0.7084 -0.1249 -2.8828 24 1 1.8244 1.1699 -2.3329 25 1 3.0049 0.3480 -4.2674 26 1 2.4778 -1.3408 -3.9786 27 1 4.6789 0.2300 -2.6507 28 1 4.5529 -1.5298 -2.9178 29 1 3.9095 -0.1139 -0.6092 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306912167.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:39 Heat of formation + Delta-G solvation = -68.272746 kcal Electronic energy + Delta-G solvation = -12184.578524 eV Core-core repulsion = 10106.661646 eV Total energy + Delta-G solvation = -2077.916878 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.31996 -37.11303 -34.42040 -32.43551 -30.90692 -28.82691 -27.06248 -23.39849 -21.68352 -20.84045 -19.25488 -17.71824 -16.97296 -16.43420 -15.53173 -15.06932 -14.61928 -14.40821 -14.26833 -13.84656 -13.45818 -13.29657 -12.71866 -12.37491 -12.27598 -12.04324 -11.80661 -11.68217 -11.47639 -10.84966 -10.73660 -10.01473 -9.16311 -8.28263 -6.39309 1.36322 1.45949 1.71307 2.42968 3.06288 3.47220 3.79327 3.90475 3.98242 4.21333 4.42008 4.58569 4.66155 4.74133 4.84555 4.93484 5.01083 5.14720 5.15748 5.19083 5.40642 5.61738 5.67515 6.16194 6.28563 6.58381 6.77763 7.15657 7.40416 8.86295 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.060144 B = 0.015323 C = 0.013783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.439094 B = 1826.856617 C = 2030.979067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.211 3.789 3 O -0.576 6.576 4 C -0.535 4.535 5 H 0.043 0.957 6 C 0.026 3.974 7 N -0.943 5.943 8 Si 0.941 3.059 9 H -0.288 1.288 10 H -0.317 1.317 11 H -0.204 1.204 12 C 0.075 3.925 13 H 0.062 0.938 14 C -0.143 4.143 15 C -0.132 4.132 16 C 0.042 3.958 17 N -0.690 5.690 18 H 0.065 0.935 19 H 0.067 0.933 20 H 0.033 0.967 21 H 0.363 0.637 22 H 0.262 0.738 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.595 4.263 -12.865 13.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.171 3.829 3 O -0.383 6.383 4 C -0.572 4.572 5 H 0.061 0.939 6 C -0.173 4.173 7 N -0.583 5.583 8 Si 0.770 3.230 9 H -0.216 1.216 10 H -0.247 1.247 11 H -0.126 1.126 12 C -0.035 4.035 13 H 0.080 0.920 14 C -0.182 4.182 15 C -0.170 4.170 16 C -0.087 4.087 17 N -0.321 5.321 18 H 0.084 0.916 19 H 0.086 0.914 20 H 0.052 0.948 21 H 0.211 0.789 22 H 0.071 0.929 23 H 0.095 0.905 24 H 0.091 0.909 25 H 0.106 0.894 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.168 3.666 -12.718 13.287 hybrid contribution 0.106 0.909 0.817 1.226 sum -1.062 4.575 -11.901 12.794 Atomic orbital electron populations 1.21915 0.95197 1.01589 1.00445 1.19241 0.91906 0.79848 0.91881 1.86585 1.25708 1.29183 1.96800 1.21689 1.31778 1.13048 0.90732 0.93911 1.25825 0.96445 0.99471 0.95526 1.70096 1.47170 1.42411 0.98622 0.86163 0.77521 0.81781 0.77560 1.21636 1.24698 1.12624 1.22795 0.88170 0.97910 0.94609 0.92024 1.23118 0.99724 1.00391 0.94946 1.22742 0.94806 1.01738 0.97716 1.22739 0.97303 1.00767 0.87877 1.61698 1.06275 1.55327 1.08827 0.91559 0.91407 0.94825 0.78945 0.92878 0.90468 0.90881 0.89435 0.91010 0.92153 0.91232 0.84698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.52 8.22 71.98 0.59 -4.93 15 2 C 0.21 9.22 0.38 -11.54 0.00 9.21 15 3 O -0.58 -23.90 8.66 -148.98 -1.29 -25.19 15 4 C -0.53 -29.45 8.21 25.60 0.21 -29.24 15 5 H 0.04 2.67 7.82 -2.91 -0.02 2.65 15 6 C 0.03 1.50 5.45 84.65 0.46 1.96 15 7 N -0.94 -59.29 13.96 21.45 0.30 -58.99 15 8 Si 0.94 46.03 23.91 68.60 1.64 47.67 15 9 H -0.29 -13.85 6.87 99.48 0.68 -13.17 15 10 H -0.32 -15.92 7.11 99.48 0.71 -15.21 15 11 H -0.20 -9.33 5.30 99.48 0.53 -8.80 15 12 C 0.08 2.84 2.68 45.38 0.12 2.96 15 13 H 0.06 2.52 8.14 -2.39 -0.02 2.50 15 14 C -0.14 -4.21 5.67 31.98 0.18 -4.03 15 15 C -0.13 -3.23 6.94 31.78 0.22 -3.00 15 16 C 0.04 1.17 7.58 86.65 0.66 1.83 15 17 N -0.69 -25.36 6.79 -482.47 -3.28 -28.63 15 18 H 0.07 2.65 8.14 -2.39 -0.02 2.63 15 19 H 0.07 2.35 7.48 -2.39 -0.02 2.33 15 20 H 0.03 1.47 3.27 -2.38 -0.01 1.46 15 21 H 0.36 13.60 7.50 -74.06 -0.56 13.04 15 22 H 0.26 15.65 8.31 -92.71 -0.77 14.88 15 23 H 0.08 2.08 8.06 -2.38 -0.02 2.06 15 24 H 0.07 2.22 7.10 -2.39 -0.02 2.20 15 25 H 0.09 1.74 8.14 -2.39 -0.02 1.72 15 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 15 27 H 0.06 1.47 8.14 -2.39 -0.02 1.45 15 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 15 29 H 0.34 12.65 6.64 -89.69 -0.60 12.06 15 Total: -1.00 -64.69 222.76 -0.39 -65.08 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -0.21 Total: 25.31 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: 2.44 Total: -25.24 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -2.98 Total: -87.63 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -1.29 Total: -25.19 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.64 Total: 47.67 kcal Total: -64.69 -0.39 -65.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306912167.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.192 kcal (2) G-P(sol) polarization free energy of solvation -64.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds