Wall clock time and date at job start Mon Mar 30 2020 02:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 110.33014 * 2 1 4 4 C 1.54482 * 110.46525 * 237.68308 * 2 1 3 5 5 C 1.54795 * 104.09044 * 217.15178 * 4 2 1 6 6 H 1.09001 * 110.55176 * 118.57275 * 5 4 2 7 7 N 1.46494 * 110.60265 * 241.37520 * 5 4 2 8 8 C 1.36936 * 119.99712 * 269.52793 * 7 5 4 9 9 H 1.07999 * 120.00466 * 359.97438 * 8 7 5 10 10 C 1.38819 * 119.99572 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00299 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99848 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.46889 * 89.99426 * 12 10 8 14 14 H 1.48494 * 109.47181 * 209.99674 * 12 10 8 15 15 H 1.48497 * 109.46836 * 329.99592 * 12 10 8 16 16 C 1.54484 * 103.92528 * 359.97438 * 5 4 2 17 17 H 1.09002 * 110.37173 * 265.11623 * 16 5 4 18 18 C 1.53004 * 110.37413 * 142.88977 * 16 5 4 19 19 O 1.44418 * 104.90071 * 24.00274 * 16 5 4 20 20 H 1.09007 * 109.47343 * 299.20482 * 1 2 3 21 21 H 1.08999 * 109.47452 * 59.20224 * 1 2 3 22 22 H 1.09006 * 109.47327 * 179.20638 * 1 2 3 23 23 H 1.09002 * 110.50759 * 335.78686 * 4 2 1 24 24 H 1.08997 * 110.51032 * 98.36017 * 4 2 1 25 25 H 0.97001 * 119.99963 * 89.53235 * 7 5 4 26 26 H 0.96996 * 120.00256 * 180.02562 * 11 10 8 27 27 H 1.08997 * 109.46832 * 301.55035 * 18 16 5 28 28 H 1.09003 * 109.46913 * 61.54803 * 18 16 5 29 29 H 1.08993 * 109.47169 * 181.55010 * 18 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0701 -0.7737 -1.2231 5 6 3.3230 -1.5051 -0.6832 6 1 3.2024 -2.5850 -0.7690 7 7 4.5246 -1.0633 -1.3952 8 6 4.9339 -1.7238 -2.5228 9 1 4.3712 -2.5707 -2.8869 10 6 6.0729 -1.3055 -3.1972 11 7 6.7590 -0.2739 -2.7532 12 14 6.6309 -2.2061 -4.7358 13 1 5.9988 -1.5869 -5.9284 14 1 8.1083 -2.1143 -4.8547 15 1 6.2292 -3.6330 -4.6472 16 6 3.3884 -1.0837 0.8016 17 1 4.0522 -0.2279 0.9243 18 6 3.8631 -2.2530 1.6668 19 8 2.0331 -0.7220 1.1451 20 1 -0.3634 0.5015 0.8971 21 1 -0.3634 0.5262 -0.8827 22 1 -0.3634 -1.0276 -0.0142 23 1 1.3313 -1.4929 -1.5768 24 1 2.3427 -0.0837 -2.0216 25 1 5.0303 -0.3030 -1.0680 26 1 7.5546 0.0186 -3.2247 27 1 3.1832 -3.0959 1.5430 28 1 4.8667 -2.5478 1.3603 29 1 3.8774 -1.9484 2.7132 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306947605.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:39 Heat of formation + Delta-G solvation = -65.773733 kcal Electronic energy + Delta-G solvation = -11649.488512 eV Core-core repulsion = 9571.679999 eV Total energy + Delta-G solvation = -2077.808513 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.59472 -36.32199 -33.71360 -33.41800 -31.00160 -29.08695 -26.02676 -23.95893 -22.43784 -21.44574 -19.21542 -17.58315 -16.69355 -16.28981 -16.05216 -15.28616 -14.89809 -14.20911 -13.90766 -13.62564 -13.12138 -12.92293 -12.86521 -12.76490 -12.60894 -12.21784 -12.14637 -11.91999 -11.66375 -11.42138 -10.95491 -10.66411 -9.05170 -7.97108 -5.27123 1.47650 1.48930 1.57579 2.53700 2.90556 3.35169 3.79025 3.90297 3.98441 4.09310 4.21273 4.38821 4.43484 4.59988 4.73207 4.75318 4.94235 5.02592 5.15203 5.17222 5.22088 5.31409 5.35891 5.48617 5.97092 6.25097 7.30365 8.02309 8.27302 9.26258 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.055536 B = 0.010609 C = 0.009753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.052804 B = 2638.602883 C = 2870.303305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.068 3.932 3 H 0.059 0.941 4 C -0.168 4.168 5 C 0.145 3.855 6 H 0.060 0.940 7 N -0.727 5.727 8 C -0.244 4.244 9 H 0.076 0.924 10 C -0.072 4.072 11 N -0.970 5.970 12 Si 0.974 3.026 13 H -0.287 1.287 14 H -0.295 1.295 15 H -0.269 1.269 16 C 0.066 3.934 17 H 0.054 0.946 18 C -0.132 4.132 19 O -0.381 6.381 20 H 0.068 0.932 21 H 0.082 0.918 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.373 0.627 26 H 0.252 0.748 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.790 -1.577 5.438 11.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.011 3.989 3 H 0.077 0.923 4 C -0.209 4.209 5 C 0.035 3.965 6 H 0.078 0.922 7 N -0.368 5.368 8 C -0.375 4.375 9 H 0.094 0.906 10 C -0.264 4.264 11 N -0.620 5.620 12 Si 0.803 3.197 13 H -0.214 1.214 14 H -0.222 1.222 15 H -0.193 1.193 16 C 0.008 3.992 17 H 0.072 0.928 18 C -0.189 4.189 19 O -0.301 6.301 20 H 0.087 0.913 21 H 0.101 0.899 22 H 0.083 0.917 23 H 0.095 0.905 24 H 0.079 0.921 25 H 0.205 0.795 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.899 -1.774 5.512 11.468 hybrid contribution 0.950 0.174 -1.018 1.403 sum -8.950 -1.600 4.494 10.141 Atomic orbital electron populations 1.21767 0.91184 1.03144 1.03177 1.23023 0.96564 0.94760 0.84583 0.92346 1.23674 0.98885 1.00167 0.98157 1.21850 0.86674 0.97360 0.90600 0.92196 1.42520 1.28072 1.36623 1.29545 1.19621 1.06442 1.09597 1.01887 0.90573 1.25564 0.98516 0.99584 1.02784 1.69813 1.19879 1.29395 1.42906 0.85133 0.76702 0.78452 0.79425 1.21406 1.22192 1.19349 1.23165 0.83964 0.97640 0.94477 0.92776 1.21671 1.01219 0.96543 0.99497 1.89035 1.27099 1.74961 1.38998 0.91266 0.89870 0.91709 0.90525 0.92125 0.79466 0.93914 0.91410 0.91657 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.53 71.98 0.69 -2.53 15 2 C 0.07 2.15 3.92 31.10 0.12 2.27 15 3 H 0.06 1.87 8.14 -2.39 -0.02 1.85 15 4 C -0.17 -6.09 6.43 31.71 0.20 -5.89 15 5 C 0.14 5.94 3.33 46.11 0.15 6.09 15 6 H 0.06 2.48 7.82 -2.39 -0.02 2.46 15 7 N -0.73 -36.90 5.11 -317.67 -1.62 -38.52 15 8 C -0.24 -13.49 9.96 84.04 0.84 -12.65 15 9 H 0.08 4.05 7.83 -2.91 -0.02 4.03 15 10 C -0.07 -4.11 5.50 84.86 0.47 -3.65 15 11 N -0.97 -59.11 13.06 21.65 0.28 -58.83 15 12 Si 0.97 45.77 29.55 68.60 2.03 47.80 15 13 H -0.29 -13.27 7.11 99.48 0.71 -12.56 15 14 H -0.30 -13.98 7.11 99.48 0.71 -13.27 15 15 H -0.27 -11.92 7.11 99.48 0.71 -11.22 15 16 C 0.07 2.40 3.63 31.10 0.11 2.51 15 17 H 0.05 2.10 7.76 -2.39 -0.02 2.08 15 18 C -0.13 -4.11 9.52 71.98 0.69 -3.42 15 19 O -0.38 -13.16 11.04 -148.98 -1.64 -14.80 15 20 H 0.07 1.48 8.14 -2.38 -0.02 1.46 15 21 H 0.08 1.70 8.14 -2.39 -0.02 1.68 15 22 H 0.06 1.49 8.13 -2.38 -0.02 1.47 15 23 H 0.08 2.51 7.87 -2.39 -0.02 2.49 15 24 H 0.06 2.44 7.98 -2.39 -0.02 2.42 15 25 H 0.37 20.35 7.59 -92.71 -0.70 19.64 15 26 H 0.25 14.89 8.31 -92.71 -0.77 14.12 15 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 15 28 H 0.06 2.14 8.14 -2.39 -0.02 2.12 15 29 H 0.07 1.97 8.14 -2.39 -0.02 1.95 15 Total: -1.00 -61.68 244.02 2.72 -58.96 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.41 Total: 22.66 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 3.27 Total: -17.27 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -1.34 Total: -97.35 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -1.64 Total: -14.80 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -61.68 2.72 -58.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306947605.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.816 kcal (2) G-P(sol) polarization free energy of solvation -61.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds