Wall clock time and date at job start Mon Mar 30 2020 02:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.35817 * 2 1 4 4 C 1.54951 * 110.30685 * 237.86059 * 2 1 3 5 5 C 1.55312 * 100.94225 * 204.63870 * 4 2 1 6 6 H 1.08999 * 110.84840 * 275.94257 * 5 4 2 7 7 N 1.46501 * 110.84796 * 152.31944 * 5 4 2 8 8 C 1.36939 * 119.99515 * 92.17110 * 7 5 4 9 9 H 1.07996 * 120.00063 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99624 * 179.97438 * 8 7 5 11 11 N 1.31616 * 120.00344 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99879 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46873 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46838 * 120.00273 * 12 10 8 15 15 H 1.48493 * 109.47360 * 240.00447 * 12 10 8 16 16 C 1.54380 * 102.25056 * 34.13333 * 5 4 2 17 17 H 1.09002 * 109.83458 * 98.15431 * 16 5 4 18 18 C 1.53005 * 109.83249 * 219.13160 * 16 5 4 19 19 O 1.43245 * 107.59000 * 338.64209 * 16 5 4 20 20 H 1.08998 * 109.46395 * 299.30765 * 1 2 3 21 21 H 1.08994 * 109.47070 * 59.30833 * 1 2 3 22 22 H 1.08998 * 109.47022 * 179.30887 * 1 2 3 23 23 H 1.09000 * 111.12523 * 322.55899 * 4 2 1 24 24 H 1.08998 * 111.12948 * 86.72127 * 4 2 1 25 25 H 0.96996 * 120.00263 * 272.16785 * 7 5 4 26 26 H 0.96998 * 120.00376 * 179.97438 * 11 10 8 27 27 H 1.09003 * 109.47160 * 179.58845 * 18 16 5 28 28 H 1.09006 * 109.46508 * 299.58815 * 18 16 5 29 29 H 1.08999 * 109.46794 * 59.58314 * 18 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9092 1.0219 0.0000 4 6 2.0678 -0.7731 -1.2305 5 6 3.4700 -1.2026 -0.7191 6 1 4.1975 -0.4041 -0.8652 7 7 3.9090 -2.4365 -1.3757 8 6 4.6612 -2.3738 -2.5182 9 1 4.9312 -1.4147 -2.9350 10 6 5.0776 -3.5429 -3.1400 11 7 4.7491 -4.7117 -2.6317 12 14 6.1032 -3.4574 -4.6990 13 1 6.3343 -2.0361 -5.0621 14 1 7.4083 -4.1279 -4.4702 15 1 5.3828 -4.1401 -5.8035 16 6 3.2113 -1.4421 0.7839 17 1 3.0624 -2.5059 0.9686 18 6 4.3992 -0.9326 1.6027 19 8 2.0286 -0.7168 1.1405 20 1 -0.3632 0.5031 0.8961 21 1 -0.3633 0.5245 -0.8837 22 1 -0.3633 -1.0276 -0.0124 23 1 1.4470 -1.6415 -1.4509 24 1 2.1496 -0.1204 -2.0996 25 1 3.6668 -3.2978 -1.0010 26 1 5.0397 -5.5286 -3.0664 27 1 4.2073 -1.0979 2.6629 28 1 5.3006 -1.4703 1.3084 29 1 4.5360 0.1332 1.4199 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306947606.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:41 Heat of formation + Delta-G solvation = -47.190170 kcal Electronic energy + Delta-G solvation = -11642.374881 eV Core-core repulsion = 9565.372212 eV Total energy + Delta-G solvation = -2077.002669 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.16723 -34.47205 -32.27562 -31.65658 -29.35199 -27.62619 -24.23667 -22.51561 -20.65368 -19.93469 -17.39398 -16.02418 -15.45250 -14.44556 -13.91633 -13.57323 -13.16770 -13.01934 -12.43383 -12.32839 -11.90584 -11.43820 -11.31936 -11.07047 -10.86706 -10.55769 -10.50020 -10.22184 -9.94766 -9.72633 -9.08479 -8.89374 -7.02401 -5.82493 -3.12476 3.40179 3.45842 3.48177 4.22642 4.54643 5.20913 5.24510 5.36504 5.53479 5.56609 5.72937 5.77622 5.83039 5.91184 6.07724 6.19903 6.23290 6.31722 6.42214 6.51754 6.63241 6.68154 6.95755 7.57088 7.66106 8.35249 9.46688 10.01726 10.36992 11.39982 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.056237 B = 0.010488 C = 0.009694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.776923 B = 2668.977977 C = 2887.610770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.073 3.927 3 H 0.061 0.939 4 C -0.173 4.173 5 C 0.155 3.845 6 H 0.065 0.935 7 N -0.714 5.714 8 C -0.244 4.244 9 H 0.072 0.928 10 C -0.011 4.011 11 N -0.931 5.931 12 Si 0.908 3.092 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.291 1.291 16 C 0.065 3.935 17 H 0.078 0.922 18 C -0.153 4.153 19 O -0.384 6.384 20 H 0.055 0.945 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.386 0.614 26 H 0.256 0.744 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.506 8.059 4.794 10.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 H 0.079 0.921 4 C -0.214 4.214 5 C 0.043 3.957 6 H 0.083 0.917 7 N -0.354 5.354 8 C -0.375 4.375 9 H 0.090 0.910 10 C -0.207 4.207 11 N -0.579 5.579 12 Si 0.739 3.261 13 H -0.205 1.205 14 H -0.218 1.218 15 H -0.218 1.218 16 C 0.007 3.993 17 H 0.096 0.904 18 C -0.210 4.210 19 O -0.303 6.303 20 H 0.074 0.926 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.220 0.780 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.470 8.087 4.842 10.432 hybrid contribution 0.549 -0.319 -1.000 1.184 sum -3.922 7.768 3.842 9.512 Atomic orbital electron populations 1.21855 0.94621 1.02483 1.01456 1.22850 0.94075 0.95196 0.86365 0.92138 1.24014 1.00202 1.00281 0.96914 1.21753 0.93369 0.91288 0.89269 0.91681 1.42324 1.62235 1.01980 1.28879 1.19297 1.24686 0.92719 1.00764 0.91001 1.24766 1.01266 0.95215 0.99493 1.69671 1.50356 0.96624 1.41258 0.86102 0.79729 0.77275 0.82977 1.20498 1.21776 1.21790 1.23013 0.84700 0.95913 0.95701 0.90400 1.22044 0.98099 1.01201 0.99681 1.88359 1.42736 1.64958 1.34285 0.92635 0.91722 0.92107 0.90561 0.91102 0.77989 0.93417 0.92891 0.91134 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.62 37.16 0.36 -1.62 15 2 C 0.07 1.17 4.08 -25.70 -0.10 1.07 15 3 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 4 C -0.17 -3.18 6.26 -24.48 -0.15 -3.34 15 5 C 0.15 3.18 3.19 -65.98 -0.21 2.97 15 6 H 0.07 1.34 7.80 -51.93 -0.41 0.93 15 7 N -0.71 -17.96 5.23 -51.54 -0.27 -18.23 15 8 C -0.24 -6.72 9.96 -15.06 -0.15 -6.87 15 9 H 0.07 1.93 7.83 -52.49 -0.41 1.51 15 10 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 15 11 N -0.93 -27.99 13.06 55.49 0.72 -27.26 15 12 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 15 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 14 H -0.29 -7.14 7.11 56.52 0.40 -6.73 15 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 15 16 C 0.07 1.21 3.92 -26.01 -0.10 1.11 15 17 H 0.08 1.53 7.71 -51.93 -0.40 1.13 15 18 C -0.15 -2.50 9.44 37.16 0.35 -2.15 15 19 O -0.38 -6.96 10.70 -35.23 -0.38 -7.34 15 20 H 0.05 0.69 8.14 -51.93 -0.42 0.26 15 21 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 23 H 0.08 1.50 8.06 -51.93 -0.42 1.09 15 24 H 0.07 1.25 8.14 -51.93 -0.42 0.82 15 25 H 0.39 10.32 7.56 -40.82 -0.31 10.01 15 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 15 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 LS Contribution 244.24 15.07 3.68 3.68 Total: -1.00 -29.48 244.24 -5.83 -35.31 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -4.46 Total: 5.91 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -0.11 Total: -9.24 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.45 Total: -45.49 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.38 Total: -7.34 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.48 -5.83 -35.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306947606.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.876 kcal (2) G-P(sol) polarization free energy of solvation -29.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds