Wall clock time and date at job start Mon Mar 30 2020 02:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.35817 * 2 1 4 4 C 1.54951 * 110.30685 * 237.86059 * 2 1 3 5 5 C 1.55312 * 100.94225 * 204.63870 * 4 2 1 6 6 H 1.08999 * 110.84840 * 275.94257 * 5 4 2 7 7 N 1.46501 * 110.84796 * 152.31944 * 5 4 2 8 8 C 1.36939 * 119.99515 * 92.17110 * 7 5 4 9 9 H 1.07996 * 120.00063 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99624 * 179.97438 * 8 7 5 11 11 N 1.31616 * 120.00344 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99879 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46873 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46838 * 120.00273 * 12 10 8 15 15 H 1.48493 * 109.47360 * 240.00447 * 12 10 8 16 16 C 1.54380 * 102.25056 * 34.13333 * 5 4 2 17 17 H 1.09002 * 109.83458 * 98.15431 * 16 5 4 18 18 C 1.53005 * 109.83249 * 219.13160 * 16 5 4 19 19 O 1.43245 * 107.59000 * 338.64209 * 16 5 4 20 20 H 1.08998 * 109.46395 * 299.30765 * 1 2 3 21 21 H 1.08994 * 109.47070 * 59.30833 * 1 2 3 22 22 H 1.08998 * 109.47022 * 179.30887 * 1 2 3 23 23 H 1.09000 * 111.12523 * 322.55899 * 4 2 1 24 24 H 1.08998 * 111.12948 * 86.72127 * 4 2 1 25 25 H 0.96996 * 120.00263 * 272.16785 * 7 5 4 26 26 H 0.96998 * 120.00376 * 179.97438 * 11 10 8 27 27 H 1.09003 * 109.47160 * 179.58845 * 18 16 5 28 28 H 1.09006 * 109.46508 * 299.58815 * 18 16 5 29 29 H 1.08999 * 109.46794 * 59.58314 * 18 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9092 1.0219 0.0000 4 6 2.0678 -0.7731 -1.2305 5 6 3.4700 -1.2026 -0.7191 6 1 4.1975 -0.4041 -0.8652 7 7 3.9090 -2.4365 -1.3757 8 6 4.6612 -2.3738 -2.5182 9 1 4.9312 -1.4147 -2.9350 10 6 5.0776 -3.5429 -3.1400 11 7 4.7491 -4.7117 -2.6317 12 14 6.1032 -3.4574 -4.6990 13 1 6.3343 -2.0361 -5.0621 14 1 7.4083 -4.1279 -4.4702 15 1 5.3828 -4.1401 -5.8035 16 6 3.2113 -1.4421 0.7839 17 1 3.0624 -2.5059 0.9686 18 6 4.3992 -0.9326 1.6027 19 8 2.0286 -0.7168 1.1405 20 1 -0.3632 0.5031 0.8961 21 1 -0.3633 0.5245 -0.8837 22 1 -0.3633 -1.0276 -0.0124 23 1 1.4470 -1.6415 -1.4509 24 1 2.1496 -0.1204 -2.0996 25 1 3.6668 -3.2978 -1.0010 26 1 5.0397 -5.5286 -3.0664 27 1 4.2073 -1.0979 2.6629 28 1 5.3006 -1.4703 1.3084 29 1 4.5360 0.1332 1.4199 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306947606.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:41 Heat of formation + Delta-G solvation = -66.832451 kcal Electronic energy + Delta-G solvation = -11643.226635 eV Core-core repulsion = 9565.372212 eV Total energy + Delta-G solvation = -2077.854422 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.63474 -36.34481 -33.70303 -33.43498 -31.01850 -29.09329 -26.09698 -24.09354 -22.15302 -21.44773 -19.34843 -17.57845 -17.06995 -16.21776 -15.51357 -15.22363 -14.81304 -14.63635 -13.72643 -13.68236 -13.36508 -12.99891 -12.88772 -12.69615 -12.57124 -12.16708 -12.12590 -11.90944 -11.74477 -11.50678 -10.93394 -10.42839 -9.05963 -7.97866 -5.28257 1.47679 1.48146 1.58375 2.52964 2.85138 3.34115 3.70889 3.92051 3.93955 4.20932 4.24265 4.38337 4.47261 4.54765 4.69394 4.83990 4.91808 4.97247 5.09787 5.19729 5.27607 5.32358 5.38548 5.50679 6.16303 6.23979 7.29357 8.00573 8.25520 9.25823 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.056237 B = 0.010488 C = 0.009694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.776923 B = 2668.977977 C = 2887.610770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 H 0.082 0.918 4 C -0.168 4.168 5 C 0.146 3.854 6 H 0.068 0.932 7 N -0.726 5.726 8 C -0.244 4.244 9 H 0.079 0.921 10 C -0.073 4.073 11 N -0.970 5.970 12 Si 0.975 3.025 13 H -0.264 1.264 14 H -0.293 1.293 15 H -0.294 1.294 16 C 0.070 3.930 17 H 0.060 0.940 18 C -0.146 4.146 19 O -0.391 6.391 20 H 0.070 0.930 21 H 0.085 0.915 22 H 0.049 0.951 23 H 0.057 0.943 24 H 0.079 0.921 25 H 0.373 0.627 26 H 0.252 0.748 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.701 9.832 4.762 11.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.016 3.984 3 H 0.099 0.901 4 C -0.208 4.208 5 C 0.036 3.964 6 H 0.086 0.914 7 N -0.366 5.366 8 C -0.375 4.375 9 H 0.097 0.903 10 C -0.266 4.266 11 N -0.621 5.621 12 Si 0.804 3.196 13 H -0.188 1.188 14 H -0.220 1.220 15 H -0.221 1.221 16 C 0.012 3.988 17 H 0.078 0.922 18 C -0.204 4.204 19 O -0.311 6.311 20 H 0.089 0.911 21 H 0.104 0.896 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.097 0.903 25 H 0.206 0.794 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.681 9.918 4.824 11.982 hybrid contribution 0.555 -0.808 -0.941 1.359 sum -4.126 9.111 3.883 10.729 Atomic orbital electron populations 1.21858 0.92506 1.02409 1.03277 1.23045 0.95783 0.95358 0.84177 0.90057 1.23879 0.98389 1.00082 0.98478 1.21979 0.94393 0.89542 0.90484 0.91403 1.42464 1.62411 1.02989 1.28750 1.19678 1.23816 0.92910 1.01113 0.90295 1.25589 1.03149 0.94969 1.02848 1.69827 1.52181 0.97153 1.42898 0.85051 0.77693 0.77826 0.79036 1.18828 1.22021 1.22097 1.22866 0.85897 0.95388 0.94675 0.92182 1.21978 0.96460 1.01740 1.00195 1.88353 1.42477 1.65141 1.35104 0.91111 0.89618 0.93176 0.92438 0.90250 0.79449 0.93908 0.91295 0.92116 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.62 71.98 0.69 -2.78 15 2 C 0.07 2.18 4.08 31.26 0.13 2.31 15 3 H 0.08 2.12 8.14 -2.39 -0.02 2.10 15 4 C -0.17 -5.96 6.26 32.06 0.20 -5.76 15 5 C 0.15 5.88 3.19 46.25 0.15 6.03 15 6 H 0.07 2.69 7.80 -2.39 -0.02 2.68 15 7 N -0.73 -36.86 5.23 -316.98 -1.66 -38.52 15 8 C -0.24 -13.40 9.96 84.03 0.84 -12.57 15 9 H 0.08 4.14 7.83 -2.91 -0.02 4.12 15 10 C -0.07 -4.17 5.50 84.86 0.47 -3.71 15 11 N -0.97 -59.35 13.06 21.65 0.28 -59.07 15 12 Si 0.98 45.66 29.55 68.60 2.03 47.68 15 13 H -0.26 -11.53 7.11 99.48 0.71 -10.82 15 14 H -0.29 -13.73 7.11 99.48 0.71 -13.02 15 15 H -0.29 -13.79 7.11 99.48 0.71 -13.08 15 16 C 0.07 2.56 3.92 31.06 0.12 2.68 15 17 H 0.06 2.39 7.71 -2.39 -0.02 2.38 15 18 C -0.15 -4.55 9.44 71.98 0.68 -3.87 15 19 O -0.39 -13.45 10.70 -148.98 -1.59 -15.04 15 20 H 0.07 1.52 8.14 -2.39 -0.02 1.50 15 21 H 0.09 1.72 8.14 -2.39 -0.02 1.70 15 22 H 0.05 1.32 8.14 -2.39 -0.02 1.30 15 23 H 0.06 2.25 8.06 -2.39 -0.02 2.23 15 24 H 0.08 2.65 8.14 -2.39 -0.02 2.63 15 25 H 0.37 20.52 7.56 -92.71 -0.70 19.82 15 26 H 0.25 14.90 8.31 -92.71 -0.77 14.13 15 27 H 0.07 1.91 8.14 -2.39 -0.02 1.89 15 28 H 0.06 2.00 8.14 -2.38 -0.02 1.98 15 29 H 0.07 1.88 8.14 -2.39 -0.02 1.86 15 Total: -1.00 -61.95 244.24 2.74 -59.21 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.41 Total: 23.40 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 3.27 Total: -17.66 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -1.38 Total: -97.59 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -1.59 Total: -15.04 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -61.95 2.74 -59.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306947606.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.622 kcal (2) G-P(sol) polarization free energy of solvation -61.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds