Wall clock time and date at job start Mon Mar 30 2020 02:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.70493 * 2 1 4 4 C 1.53168 * 109.59041 * 239.64178 * 2 1 3 5 5 H 1.09006 * 109.49682 * 305.52967 * 4 2 1 6 6 O 1.42895 * 109.48324 * 65.61922 * 4 2 1 7 7 C 1.53044 * 109.32928 * 185.57482 * 4 2 1 8 8 C 1.53040 * 109.52730 * 61.36525 * 7 4 2 9 9 C 1.53191 * 109.31544 * 298.64246 * 8 7 4 10 10 N 1.46925 * 109.58700 * 120.35824 * 2 1 3 11 11 C 1.36932 * 120.63255 * 353.41891 * 10 2 1 12 12 H 1.07999 * 119.99853 * 28.99589 * 11 10 2 13 13 C 1.38811 * 120.00424 * 209.00379 * 11 10 2 14 14 N 1.31625 * 119.99687 * 15.02491 * 13 11 10 15 15 Si 1.86798 * 120.00352 * 195.02785 * 13 11 10 16 16 H 1.48499 * 109.46990 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47521 * 119.99713 * 15 13 11 18 18 H 1.48506 * 109.46967 * 239.99753 * 15 13 11 19 19 H 1.08998 * 109.47045 * 299.64730 * 1 2 3 20 20 H 1.08996 * 109.46865 * 59.64363 * 1 2 3 21 21 H 1.08997 * 109.47306 * 179.64142 * 1 2 3 22 22 H 0.96695 * 114.00405 * 179.84284 * 6 4 2 23 23 H 1.09004 * 109.45582 * 301.35413 * 7 4 2 24 24 H 1.08995 * 109.46179 * 181.38459 * 7 4 2 25 25 H 1.09000 * 109.49629 * 58.60237 * 8 7 4 26 26 H 1.08999 * 109.49577 * 178.69252 * 8 7 4 27 27 H 1.08997 * 109.58621 * 174.41934 * 9 8 7 28 28 H 1.08997 * 109.59065 * 294.85114 * 9 8 7 29 29 H 0.97002 * 119.99999 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2452 5 1 1.6029 -1.7253 -1.2910 6 8 1.6794 0.0083 -2.4136 7 6 3.5675 -0.8480 -1.1702 8 6 3.9569 -1.6657 0.0634 9 6 3.4651 -0.9470 1.3237 10 7 2.0225 -0.6996 1.1944 11 6 1.1537 -1.1136 2.1685 12 1 0.1360 -1.3681 1.9116 13 6 1.5808 -1.2061 3.4860 14 7 2.7038 -0.6277 3.8558 15 14 0.5619 -2.1514 4.7341 16 1 -0.6468 -2.7028 4.0705 17 1 1.3712 -3.2639 5.2930 18 1 0.1510 -1.2385 5.8309 19 1 -0.3633 0.5083 0.8931 20 1 -0.3633 0.5193 -0.8867 21 1 -0.3634 -1.0276 -0.0064 22 1 1.9751 -0.3949 -3.2413 23 1 4.0062 0.1474 -1.0994 24 1 3.9376 -1.3449 -2.0669 25 1 3.4983 -2.6529 0.0051 26 1 5.0412 -1.7696 0.1036 27 1 3.6518 -1.5718 2.1970 28 1 3.9903 0.0020 1.4317 29 1 3.0025 -0.6926 4.7764 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307087696.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:52 Heat of formation + Delta-G solvation = -39.429447 kcal Electronic energy + Delta-G solvation = -12083.895110 eV Core-core repulsion = 10007.228971 eV Total energy + Delta-G solvation = -2076.666139 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.29247 -35.35049 -32.60393 -31.71726 -29.15899 -26.02734 -24.93255 -21.97527 -20.59065 -19.16520 -17.01021 -15.98132 -14.90598 -14.34607 -14.00934 -13.67084 -13.15750 -12.84734 -12.36841 -11.85962 -11.33619 -11.20568 -10.93699 -10.72024 -10.61257 -10.35284 -10.02801 -9.94321 -9.71973 -9.39511 -9.11099 -8.45516 -6.64758 -5.76804 -3.20605 3.38068 3.45756 3.48001 4.43895 4.81256 5.35092 5.43793 5.53990 5.61920 5.79752 5.99054 6.25195 6.31453 6.44082 6.51165 6.57307 6.68137 6.75206 6.85752 7.10548 7.16802 7.40772 7.68757 7.83930 8.09828 8.48382 9.23473 9.86515 10.43220 11.32341 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.053919 B = 0.014370 C = 0.012282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.171079 B = 1948.077373 C = 2279.133334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.179 3.821 3 H 0.031 0.969 4 C 0.089 3.911 5 H 0.049 0.951 6 O -0.571 6.571 7 C -0.141 4.141 8 C -0.141 4.141 9 C 0.168 3.832 10 N -0.585 5.585 11 C -0.249 4.249 12 H 0.072 0.928 13 C 0.001 3.999 14 N -0.904 5.904 15 Si 0.903 3.097 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.290 1.290 19 H 0.060 0.940 20 H 0.045 0.955 21 H 0.049 0.951 22 H 0.365 0.635 23 H 0.061 0.939 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.090 0.910 28 H 0.019 0.981 29 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.336 -1.654 -8.104 8.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.072 3.928 3 H 0.048 0.952 4 C 0.029 3.971 5 H 0.067 0.933 6 O -0.375 6.375 7 C -0.179 4.179 8 C -0.181 4.181 9 C 0.042 3.958 10 N -0.310 5.310 11 C -0.379 4.379 12 H 0.089 0.911 13 C -0.198 4.198 14 N -0.549 5.549 15 Si 0.733 3.267 16 H -0.202 1.202 17 H -0.216 1.216 18 H -0.217 1.217 19 H 0.079 0.921 20 H 0.064 0.936 21 H 0.068 0.932 22 H 0.210 0.790 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.037 0.963 29 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.118 -1.246 -7.474 7.578 hybrid contribution -0.029 -0.888 0.279 0.931 sum 0.090 -2.134 -7.195 7.505 Atomic orbital electron populations 1.21751 0.95602 1.01153 1.00500 1.20255 0.93395 0.93762 0.85411 0.95162 1.22575 0.93430 0.94855 0.86223 0.93275 1.86501 1.81274 1.53709 1.16007 1.22138 0.96962 1.00654 0.98128 1.22192 0.99199 0.99477 0.97201 1.20846 0.83306 0.97266 0.94374 1.44117 1.03102 1.65404 1.18346 1.19247 0.94841 1.37561 0.86221 0.91054 1.25094 0.97895 0.99842 0.96927 1.70040 1.23394 1.44683 1.16760 0.86211 0.79624 0.79477 0.81414 1.20239 1.21607 1.21711 0.92128 0.93571 0.93155 0.79010 0.92066 0.93669 0.92723 0.93047 0.89197 0.96307 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 7.84 37.16 0.29 -2.47 15 2 C 0.18 4.03 3.20 -67.61 -0.22 3.81 15 3 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 4 C 0.09 1.70 3.00 -26.62 -0.08 1.62 15 5 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 6 O -0.57 -9.67 12.91 -35.23 -0.45 -10.12 15 7 C -0.14 -2.51 5.51 -26.69 -0.15 -2.66 15 8 C -0.14 -2.77 6.08 -26.61 -0.16 -2.94 15 9 C 0.17 4.09 5.29 -3.71 -0.02 4.07 15 10 N -0.59 -14.98 2.99 -164.79 -0.49 -15.48 15 11 C -0.25 -6.84 8.60 -15.06 -0.13 -6.97 15 12 H 0.07 1.92 6.21 -52.49 -0.33 1.59 15 13 C 0.00 0.02 4.96 -17.43 -0.09 -0.07 15 14 N -0.90 -26.39 11.14 55.49 0.62 -25.77 15 15 Si 0.90 21.77 29.58 -169.99 -5.03 16.74 15 16 H -0.28 -6.53 7.11 56.52 0.40 -6.12 15 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 19 H 0.06 1.32 7.62 -51.93 -0.40 0.92 15 20 H 0.05 0.86 7.87 -51.93 -0.41 0.46 15 21 H 0.05 1.03 7.44 -51.93 -0.39 0.65 15 22 H 0.36 4.35 9.08 45.56 0.41 4.77 15 23 H 0.06 1.13 8.14 -51.93 -0.42 0.70 15 24 H 0.04 0.68 8.14 -51.93 -0.42 0.25 15 25 H 0.05 1.08 8.14 -51.93 -0.42 0.65 15 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 27 H 0.09 2.42 6.06 -51.93 -0.31 2.11 15 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 15 LS Contribution 232.00 15.07 3.50 3.50 Total: -1.00 -29.93 232.00 -5.92 -35.85 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -3.51 Total: 0.88 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -0.55 Total: -5.60 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.13 Total: -41.25 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -0.45 Total: -10.12 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -29.93 -5.92 -35.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307087696.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.581 kcal (2) G-P(sol) polarization free energy of solvation -29.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds