Wall clock time and date at job start Mon Mar 30 2020 02:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.70493 * 2 1 4 4 C 1.53168 * 109.59041 * 239.64178 * 2 1 3 5 5 H 1.09006 * 109.49682 * 305.52967 * 4 2 1 6 6 O 1.42895 * 109.48324 * 65.61922 * 4 2 1 7 7 C 1.53044 * 109.32928 * 185.57482 * 4 2 1 8 8 C 1.53040 * 109.52730 * 61.36525 * 7 4 2 9 9 C 1.53191 * 109.31544 * 298.64246 * 8 7 4 10 10 N 1.46925 * 109.58700 * 120.35824 * 2 1 3 11 11 C 1.36932 * 120.63255 * 353.41891 * 10 2 1 12 12 H 1.07999 * 119.99853 * 28.99589 * 11 10 2 13 13 C 1.38811 * 120.00424 * 209.00379 * 11 10 2 14 14 N 1.31625 * 119.99687 * 15.02491 * 13 11 10 15 15 Si 1.86798 * 120.00352 * 195.02785 * 13 11 10 16 16 H 1.48499 * 109.46990 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47521 * 119.99713 * 15 13 11 18 18 H 1.48506 * 109.46967 * 239.99753 * 15 13 11 19 19 H 1.08998 * 109.47045 * 299.64730 * 1 2 3 20 20 H 1.08996 * 109.46865 * 59.64363 * 1 2 3 21 21 H 1.08997 * 109.47306 * 179.64142 * 1 2 3 22 22 H 0.96695 * 114.00405 * 179.84284 * 6 4 2 23 23 H 1.09004 * 109.45582 * 301.35413 * 7 4 2 24 24 H 1.08995 * 109.46179 * 181.38459 * 7 4 2 25 25 H 1.09000 * 109.49629 * 58.60237 * 8 7 4 26 26 H 1.08999 * 109.49577 * 178.69252 * 8 7 4 27 27 H 1.08997 * 109.58621 * 174.41934 * 9 8 7 28 28 H 1.08997 * 109.59065 * 294.85114 * 9 8 7 29 29 H 0.97002 * 119.99999 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2452 5 1 1.6029 -1.7253 -1.2910 6 8 1.6794 0.0083 -2.4136 7 6 3.5675 -0.8480 -1.1702 8 6 3.9569 -1.6657 0.0634 9 6 3.4651 -0.9470 1.3237 10 7 2.0225 -0.6996 1.1944 11 6 1.1537 -1.1136 2.1685 12 1 0.1360 -1.3681 1.9116 13 6 1.5808 -1.2061 3.4860 14 7 2.7038 -0.6277 3.8558 15 14 0.5619 -2.1514 4.7341 16 1 -0.6468 -2.7028 4.0705 17 1 1.3712 -3.2639 5.2930 18 1 0.1510 -1.2385 5.8309 19 1 -0.3633 0.5083 0.8931 20 1 -0.3633 0.5193 -0.8867 21 1 -0.3634 -1.0276 -0.0064 22 1 1.9751 -0.3949 -3.2413 23 1 4.0062 0.1474 -1.0994 24 1 3.9376 -1.3449 -2.0669 25 1 3.4983 -2.6529 0.0051 26 1 5.0412 -1.7696 0.1036 27 1 3.6518 -1.5718 2.1970 28 1 3.9903 0.0020 1.4317 29 1 3.0025 -0.6926 4.7764 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307087696.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:52 Heat of formation + Delta-G solvation = -60.941000 kcal Electronic energy + Delta-G solvation = -12084.827920 eV Core-core repulsion = 10007.228971 eV Total energy + Delta-G solvation = -2077.598950 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.92870 -36.96426 -34.38769 -33.54646 -30.99416 -27.76737 -26.83975 -23.74593 -22.29091 -20.91357 -18.62450 -17.84365 -16.80375 -16.00225 -15.66448 -15.48060 -14.94076 -14.45419 -14.05429 -13.51480 -13.10858 -12.90624 -12.78694 -12.49239 -12.42703 -12.11581 -11.92059 -11.68975 -11.49198 -11.06589 -10.62655 -10.54183 -8.68883 -7.86688 -5.33732 1.46787 1.48191 1.58963 2.49631 3.25800 3.32733 3.79213 3.97116 4.05162 4.24782 4.36912 4.65163 4.71741 4.74615 4.92187 4.96482 5.05200 5.16625 5.26154 5.38790 5.44540 5.55592 5.69413 5.74463 6.40350 6.99782 7.15743 7.85074 8.37514 9.20999 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.053919 B = 0.014370 C = 0.012282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.171079 B = 1948.077373 C = 2279.133334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.166 3.834 3 H 0.007 0.993 4 C 0.104 3.896 5 H 0.052 0.948 6 O -0.577 6.577 7 C -0.135 4.135 8 C -0.130 4.130 9 C 0.170 3.830 10 N -0.602 5.602 11 C -0.255 4.255 12 H 0.076 0.924 13 C -0.055 4.055 14 N -0.938 5.938 15 Si 0.968 3.032 16 H -0.265 1.265 17 H -0.289 1.289 18 H -0.294 1.294 19 H 0.041 0.959 20 H 0.068 0.932 21 H 0.051 0.949 22 H 0.391 0.609 23 H 0.052 0.948 24 H 0.087 0.913 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.058 0.942 28 H -0.008 1.008 29 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.058 -2.599 -9.768 10.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.060 3.940 3 H 0.025 0.975 4 C 0.043 3.957 5 H 0.070 0.930 6 O -0.384 6.384 7 C -0.173 4.173 8 C -0.169 4.169 9 C 0.044 3.956 10 N -0.327 5.327 11 C -0.385 4.385 12 H 0.093 0.907 13 C -0.249 4.249 14 N -0.585 5.585 15 Si 0.796 3.204 16 H -0.189 1.189 17 H -0.216 1.216 18 H -0.221 1.221 19 H 0.060 0.940 20 H 0.086 0.914 21 H 0.070 0.930 22 H 0.241 0.759 23 H 0.071 0.929 24 H 0.106 0.894 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.010 0.990 29 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.281 -2.197 -9.190 9.453 hybrid contribution 0.090 -0.518 0.729 0.899 sum -0.191 -2.715 -8.461 8.888 Atomic orbital electron populations 1.21653 0.94506 1.01242 1.00635 1.20439 0.94481 0.92840 0.86252 0.97491 1.22137 0.94019 0.94083 0.85451 0.92993 1.86437 1.81447 1.53831 1.16659 1.22096 0.96085 1.00321 0.98771 1.22014 1.00496 0.98989 0.95450 1.20703 0.83036 0.95906 0.95907 1.44370 1.03327 1.65890 1.19118 1.19570 0.95311 1.36724 0.86869 0.90681 1.25876 0.99189 1.01079 0.98800 1.70202 1.25132 1.46337 1.16814 0.85190 0.78480 0.77882 0.78824 1.18911 1.21603 1.22073 0.94001 0.91363 0.92989 0.75945 0.92883 0.89434 0.92507 0.90745 0.92349 0.98962 0.94200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 7.84 71.98 0.56 -4.43 15 2 C 0.17 7.38 3.20 44.97 0.14 7.52 15 3 H 0.01 0.36 8.14 -2.38 -0.02 0.34 15 4 C 0.10 3.66 3.00 30.67 0.09 3.75 15 5 H 0.05 1.84 8.14 -2.38 -0.02 1.82 15 6 O -0.58 -17.43 12.91 -148.98 -1.92 -19.35 15 7 C -0.13 -4.39 5.51 30.62 0.17 -4.22 15 8 C -0.13 -4.88 6.08 30.67 0.19 -4.69 15 9 C 0.17 8.42 5.29 86.36 0.46 8.87 15 10 N -0.60 -31.04 2.99 -675.28 -2.02 -33.06 15 11 C -0.25 -14.07 8.60 84.03 0.72 -13.35 15 12 H 0.08 4.01 6.21 -2.91 -0.02 3.99 15 13 C -0.05 -3.08 4.96 84.86 0.42 -2.66 15 14 N -0.94 -56.31 11.14 21.65 0.24 -56.07 15 15 Si 0.97 45.19 29.58 68.60 2.03 47.22 15 16 H -0.26 -11.68 7.11 99.48 0.71 -10.98 15 17 H -0.29 -13.40 7.11 99.48 0.71 -12.69 15 18 H -0.29 -13.77 7.11 99.48 0.71 -13.06 15 19 H 0.04 1.81 7.62 -2.39 -0.02 1.79 15 20 H 0.07 2.43 7.87 -2.39 -0.02 2.41 15 21 H 0.05 2.06 7.44 -2.39 -0.02 2.04 15 22 H 0.39 7.50 9.08 -74.06 -0.67 6.83 15 23 H 0.05 1.82 8.14 -2.38 -0.02 1.81 15 24 H 0.09 2.17 8.14 -2.39 -0.02 2.15 15 25 H 0.06 2.11 8.14 -2.39 -0.02 2.09 15 26 H 0.07 2.43 8.14 -2.39 -0.02 2.41 15 27 H 0.06 3.24 6.06 -2.39 -0.01 3.22 15 28 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 15 29 H 0.25 14.42 8.31 -92.71 -0.77 13.65 15 Total: -1.00 -64.60 232.00 1.54 -63.07 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 0.45 Total: 7.39 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 2.76 Total: -9.20 kcal Atomic # 7 Polarization: -87.34 SS G_CDS: -1.78 Total: -89.12 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -1.92 Total: -19.35 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -64.60 1.54 -63.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307087696.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.124 kcal (2) G-P(sol) polarization free energy of solvation -64.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds