Wall clock time and date at job start Mon Mar 30 2020 01:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.50698 * 109.47150 * 239.99980 * 2 1 3 5 5 H 1.08004 * 119.99528 * 239.99354 * 4 2 1 6 6 C 1.37876 * 120.00356 * 60.00153 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47385 * 59.99525 * 8 6 4 10 10 H 1.48500 * 109.47279 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47348 * 299.99599 * 8 6 4 12 12 C 1.52997 * 109.47269 * 119.99603 * 2 1 3 13 13 H 1.09002 * 110.87596 * 57.61133 * 12 2 1 14 14 C 1.55141 * 110.99040 * 293.72505 * 12 2 1 15 15 C 1.54318 * 103.01834 * 206.25220 * 14 12 2 16 16 N 1.47439 * 107.23445 * 22.28537 * 15 14 12 17 17 C 1.47845 * 108.56682 * 0.98765 * 16 15 14 18 18 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 19 19 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 21 21 H 0.96696 * 114.00036 * 179.97438 * 3 2 1 22 22 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 23 23 H 1.08999 * 110.70888 * 324.64041 * 14 12 2 24 24 H 1.09008 * 110.70710 * 87.87053 * 14 12 2 25 25 H 1.09004 * 109.89054 * 262.87750 * 15 14 12 26 26 H 1.09002 * 110.02311 * 141.76570 * 15 14 12 27 27 H 1.00900 * 111.00005 * 238.72008 * 16 15 14 28 28 H 1.08996 * 110.37419 * 217.07316 * 17 16 15 29 29 H 1.09001 * 110.46908 * 94.78011 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0080 10 1 1.8271 -0.4200 -5.2204 11 1 3.8076 -1.1190 -4.0076 12 6 2.0400 -0.7211 1.2493 13 1 1.6552 -1.7400 1.2940 14 6 1.6758 0.0682 2.5342 15 6 2.7711 -0.3657 3.5309 16 7 3.9167 -0.8484 2.7382 17 6 3.5881 -0.7099 1.3034 18 1 -0.3634 0.5137 -0.8900 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 2.9702 1.4238 0.0004 22 1 0.7082 1.1608 -3.4845 23 1 1.7228 1.1421 2.3532 24 1 0.6889 -0.2197 2.8967 25 1 2.3967 -1.1673 4.1676 26 1 3.0755 0.4828 4.1437 27 1 4.1376 -1.8057 2.9678 28 1 3.9937 -1.5492 0.7385 29 1 3.9746 0.2315 0.9129 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307197884.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:47 Heat of formation + Delta-G solvation = -55.080394 kcal Electronic energy + Delta-G solvation = -12082.696569 eV Core-core repulsion = 10005.351755 eV Total energy + Delta-G solvation = -2077.344815 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.49390 -35.31699 -32.19063 -30.40832 -28.63804 -27.29054 -25.10823 -21.39094 -20.67629 -18.68950 -16.89843 -16.07256 -15.35706 -14.60413 -13.74052 -13.44982 -12.96107 -12.31705 -11.95916 -11.76015 -11.26566 -10.99626 -10.94727 -10.71994 -10.68848 -10.39573 -10.22484 -9.96183 -9.89135 -8.87248 -8.48945 -8.08456 -7.94103 -5.94599 -4.15268 3.29023 3.34704 3.36491 4.39319 4.75680 5.26826 5.37003 5.42778 5.71611 5.86963 6.06809 6.12430 6.28758 6.44025 6.53435 6.68543 6.73638 6.97288 7.07439 7.11973 7.31901 7.63593 7.77673 7.82127 8.05878 8.31903 8.85083 9.41698 9.62963 11.04516 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.057349 B = 0.013796 C = 0.012244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.122458 B = 2029.023258 C = 2286.326266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.262 3.738 3 O -0.559 6.559 4 C -0.560 4.560 5 H 0.053 0.947 6 C 0.080 3.920 7 N -0.857 5.857 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.277 1.277 12 C -0.134 4.134 13 H 0.062 0.938 14 C -0.135 4.135 15 C 0.047 3.953 16 N -0.692 5.692 17 C 0.060 3.940 18 H 0.088 0.912 19 H 0.034 0.966 20 H 0.014 0.986 21 H 0.345 0.655 22 H 0.259 0.741 23 H 0.079 0.921 24 H 0.058 0.942 25 H 0.041 0.959 26 H 0.065 0.935 27 H 0.328 0.672 28 H 0.062 0.938 29 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.102 -2.870 6.696 7.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.222 3.778 3 O -0.364 6.364 4 C -0.598 4.598 5 H 0.072 0.928 6 C -0.125 4.125 7 N -0.493 5.493 8 Si 0.714 3.286 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 C -0.154 4.154 13 H 0.081 0.919 14 C -0.174 4.174 15 C -0.082 4.082 16 N -0.320 5.320 17 C -0.068 4.068 18 H 0.106 0.894 19 H 0.053 0.947 20 H 0.033 0.967 21 H 0.190 0.810 22 H 0.069 0.931 23 H 0.098 0.902 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.143 0.857 28 H 0.081 0.919 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.745 -2.004 6.624 7.137 hybrid contribution 0.232 -1.494 -1.018 1.823 sum 1.977 -3.499 5.606 6.897 Atomic orbital electron populations 1.21603 0.96288 0.98998 1.01134 1.18485 0.91240 0.79576 0.88476 1.86504 1.23609 1.29355 1.96882 1.21562 1.33624 1.13396 0.91184 0.92833 1.24998 0.94259 0.94417 0.98835 1.69997 1.34657 1.21605 1.23074 0.86784 0.79347 0.79836 0.82665 1.20336 1.21261 1.20206 1.23402 0.95662 0.99288 0.97051 0.91915 1.22783 0.97198 1.02079 0.95295 1.22609 0.90392 0.99088 0.96158 1.61817 1.38528 1.25741 1.05893 1.22782 0.95092 1.01975 0.86955 0.89362 0.94652 0.96667 0.80969 0.93081 0.90226 0.92306 0.94078 0.91672 0.85748 0.91943 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.02 8.47 37.16 0.31 -2.70 15 2 C 0.26 6.38 0.46 -91.77 -0.04 6.33 15 3 O -0.56 -14.14 11.30 -35.23 -0.40 -14.54 15 4 C -0.56 -14.85 7.71 -34.44 -0.27 -15.11 15 5 H 0.05 1.40 7.31 -52.48 -0.38 1.02 15 6 C 0.08 2.19 5.24 -17.82 -0.09 2.09 15 7 N -0.86 -24.44 10.87 55.43 0.60 -23.84 15 8 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 15 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 12 C -0.13 -2.73 2.37 -88.48 -0.21 -2.94 15 13 H 0.06 1.30 8.14 -51.93 -0.42 0.87 15 14 C -0.14 -2.45 5.52 -24.91 -0.14 -2.59 15 15 C 0.05 0.74 7.58 -2.84 -0.02 0.72 15 16 N -0.69 -11.39 7.39 -110.79 -0.82 -12.21 15 17 C 0.06 1.14 6.31 -2.30 -0.01 1.12 15 18 H 0.09 2.42 6.07 -51.93 -0.32 2.10 15 19 H 0.03 0.82 8.14 -51.93 -0.42 0.39 15 20 H 0.01 0.33 7.50 -51.93 -0.39 -0.06 15 21 H 0.35 8.00 7.07 45.56 0.32 8.32 15 22 H 0.26 7.09 8.31 -40.82 -0.34 6.75 15 23 H 0.08 1.56 7.18 -51.93 -0.37 1.19 15 24 H 0.06 1.01 8.13 -51.92 -0.42 0.59 15 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 15 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 27 H 0.33 4.74 8.91 -39.29 -0.35 4.39 15 28 H 0.06 1.17 7.86 -51.93 -0.41 0.76 15 29 H 0.08 1.51 6.16 -51.93 -0.32 1.19 15 LS Contribution 231.14 15.07 3.48 3.48 Total: -1.00 -28.51 231.14 -6.09 -34.59 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -3.46 Total: 9.70 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -0.47 Total: -13.08 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: -0.22 Total: -36.04 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.40 Total: -14.54 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -28.51 -6.09 -34.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307197884.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.487 kcal (2) G-P(sol) polarization free energy of solvation -28.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds