Wall clock time and date at job start Mon Mar 30 2020 01:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.50698 * 109.47150 * 239.99980 * 2 1 3 5 5 H 1.08004 * 119.99528 * 239.99354 * 4 2 1 6 6 C 1.37876 * 120.00356 * 60.00153 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47385 * 59.99525 * 8 6 4 10 10 H 1.48500 * 109.47279 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47348 * 299.99599 * 8 6 4 12 12 C 1.52997 * 109.47269 * 119.99603 * 2 1 3 13 13 H 1.09002 * 110.87596 * 57.61133 * 12 2 1 14 14 C 1.55141 * 110.99040 * 293.72505 * 12 2 1 15 15 C 1.54318 * 103.01834 * 206.25220 * 14 12 2 16 16 N 1.47439 * 107.23445 * 22.28537 * 15 14 12 17 17 C 1.47845 * 108.56682 * 0.98765 * 16 15 14 18 18 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 19 19 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 21 21 H 0.96696 * 114.00036 * 179.97438 * 3 2 1 22 22 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 23 23 H 1.08999 * 110.70888 * 324.64041 * 14 12 2 24 24 H 1.09008 * 110.70710 * 87.87053 * 14 12 2 25 25 H 1.09004 * 109.89054 * 262.87750 * 15 14 12 26 26 H 1.09002 * 110.02311 * 141.76570 * 15 14 12 27 27 H 1.00900 * 111.00005 * 238.72008 * 16 15 14 28 28 H 1.08996 * 110.37419 * 217.07316 * 17 16 15 29 29 H 1.09001 * 110.46908 * 94.78011 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0080 10 1 1.8271 -0.4200 -5.2204 11 1 3.8076 -1.1190 -4.0076 12 6 2.0400 -0.7211 1.2493 13 1 1.6552 -1.7400 1.2940 14 6 1.6758 0.0682 2.5342 15 6 2.7711 -0.3657 3.5309 16 7 3.9167 -0.8484 2.7382 17 6 3.5881 -0.7099 1.3034 18 1 -0.3634 0.5137 -0.8900 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 2.9702 1.4238 0.0004 22 1 0.7082 1.1608 -3.4845 23 1 1.7228 1.1421 2.3532 24 1 0.6889 -0.2197 2.8967 25 1 2.3967 -1.1673 4.1676 26 1 3.0755 0.4828 4.1437 27 1 4.1376 -1.8057 2.9678 28 1 3.9937 -1.5492 0.7385 29 1 3.9746 0.2315 0.9129 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307197884.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:47 Heat of formation + Delta-G solvation = -76.863107 kcal Electronic energy + Delta-G solvation = -12083.641139 eV Core-core repulsion = 10005.351755 eV Total energy + Delta-G solvation = -2078.289384 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.09239 -37.05665 -34.24623 -32.19803 -30.10629 -28.96654 -27.13196 -23.13733 -22.07490 -20.43593 -18.84834 -17.50319 -17.08505 -16.63517 -15.50699 -15.06919 -14.50782 -13.86487 -13.66903 -13.40871 -13.16647 -12.86985 -12.81594 -12.56425 -12.27804 -12.21095 -12.02623 -11.66991 -11.45603 -10.72619 -10.54889 -10.01056 -9.32283 -8.00080 -6.26929 1.42495 1.43082 1.50277 2.42836 3.19252 3.42095 3.92313 4.00688 4.19959 4.30353 4.50398 4.66673 4.78593 4.88788 4.98986 5.07425 5.14442 5.22611 5.26101 5.47326 5.61931 5.79906 5.94017 6.07135 6.29284 6.58527 6.80766 7.41496 7.64671 8.97508 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.057349 B = 0.013796 C = 0.012244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.122458 B = 2029.023258 C = 2286.326266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.253 3.747 3 O -0.574 6.574 4 C -0.568 4.568 5 H 0.054 0.946 6 C 0.032 3.968 7 N -0.889 5.889 8 Si 0.947 3.053 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.271 1.271 12 C -0.131 4.131 13 H 0.061 0.939 14 C -0.131 4.131 15 C 0.052 3.948 16 N -0.690 5.690 17 C 0.068 3.932 18 H 0.056 0.944 19 H 0.041 0.959 20 H 0.028 0.972 21 H 0.351 0.649 22 H 0.257 0.743 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.343 0.657 28 H 0.061 0.939 29 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.797 -3.878 7.616 8.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.213 3.787 3 O -0.379 6.379 4 C -0.606 4.606 5 H 0.072 0.928 6 C -0.171 4.171 7 N -0.526 5.526 8 Si 0.773 3.227 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.196 1.196 12 C -0.152 4.152 13 H 0.080 0.920 14 C -0.169 4.169 15 C -0.077 4.077 16 N -0.319 5.319 17 C -0.061 4.061 18 H 0.075 0.925 19 H 0.060 0.940 20 H 0.047 0.953 21 H 0.197 0.803 22 H 0.066 0.934 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.159 0.841 28 H 0.079 0.921 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.452 -3.030 7.561 8.507 hybrid contribution 0.002 -1.175 -1.267 1.728 sum 2.454 -4.205 6.294 7.957 Atomic orbital electron populations 1.21530 0.96893 0.99050 1.00186 1.18566 0.90968 0.79374 0.89769 1.86469 1.24269 1.30121 1.97045 1.21911 1.33127 1.13316 0.92263 0.92803 1.25724 0.94545 0.95097 1.01697 1.70146 1.36002 1.23096 1.23393 0.85816 0.78912 0.78783 0.79223 1.19787 1.21377 1.19630 1.23230 0.96837 0.98837 0.96276 0.92036 1.22717 0.98782 1.00554 0.94859 1.22620 0.89158 1.00359 0.95593 1.61759 1.38744 1.27036 1.04349 1.22599 0.93747 1.01227 0.88542 0.92476 0.94040 0.95338 0.80298 0.93404 0.92071 0.91344 0.91496 0.90681 0.84110 0.92054 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 8.47 71.98 0.61 -5.23 15 2 C 0.25 12.22 0.46 -11.54 -0.01 12.21 15 3 O -0.57 -29.14 11.30 -148.98 -1.68 -30.83 15 4 C -0.57 -29.95 7.71 25.60 0.20 -29.75 15 5 H 0.05 2.77 7.31 -2.91 -0.02 2.75 15 6 C 0.03 1.72 5.24 84.65 0.44 2.16 15 7 N -0.89 -51.29 10.87 21.45 0.23 -51.05 15 8 Si 0.95 42.81 29.54 68.60 2.03 44.84 15 9 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 10 H -0.29 -12.97 7.11 99.48 0.71 -12.27 15 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 12 C -0.13 -5.18 2.37 -9.41 -0.02 -5.20 15 13 H 0.06 2.43 8.14 -2.39 -0.02 2.41 15 14 C -0.13 -4.48 5.52 31.78 0.18 -4.30 15 15 C 0.05 1.46 7.58 86.65 0.66 2.11 15 16 N -0.69 -20.74 7.39 -504.44 -3.73 -24.47 15 17 C 0.07 2.45 6.31 86.77 0.55 2.99 15 18 H 0.06 3.17 6.07 -2.39 -0.01 3.15 15 19 H 0.04 1.91 8.14 -2.39 -0.02 1.89 15 20 H 0.03 1.26 7.50 -2.39 -0.02 1.24 15 21 H 0.35 16.40 7.07 -74.06 -0.52 15.88 15 22 H 0.26 14.26 8.31 -92.70 -0.77 13.49 15 23 H 0.06 2.33 7.18 -2.39 -0.02 2.31 15 24 H 0.07 2.19 8.13 -2.38 -0.02 2.17 15 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 15 26 H 0.07 2.00 8.14 -2.39 -0.02 1.99 15 27 H 0.34 8.74 8.91 -89.69 -0.80 7.95 15 28 H 0.06 2.20 7.86 -2.39 -0.02 2.18 15 29 H 0.06 2.42 6.16 -2.39 -0.01 2.41 15 Total: -1.00 -59.22 231.14 -0.72 -59.94 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: -0.17 Total: 26.57 kcal Atomic # 6 Polarization: -27.60 SS G_CDS: 2.60 Total: -25.00 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: -3.50 Total: -75.52 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -1.68 Total: -30.83 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -59.22 -0.72 -59.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307197884.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.922 kcal (2) G-P(sol) polarization free energy of solvation -59.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds