Wall clock time and date at job start Mon Mar 30 2020 01:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 110.45528 * 2 1 4 4 N 1.46506 * 109.47233 * 57.39542 * 3 2 1 5 5 C 1.36931 * 119.99939 * 179.97438 * 4 3 2 6 6 H 1.08000 * 120.00644 * 359.97438 * 5 4 3 7 7 C 1.38815 * 119.99715 * 179.97438 * 5 4 3 8 8 N 1.31611 * 120.00107 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99746 * 179.72150 * 7 5 4 10 10 H 1.48497 * 109.47323 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46790 * 120.00304 * 9 7 5 12 12 H 1.48501 * 109.47364 * 240.00332 * 9 7 5 13 13 C 1.54510 * 110.51484 * 237.39352 * 2 1 3 14 14 C 1.54473 * 104.06513 * 241.22060 * 13 2 1 15 15 O 1.44425 * 104.80478 * 23.97353 * 14 13 2 16 16 C 1.44428 * 105.27854 * 319.49535 * 15 14 13 17 17 H 1.09006 * 109.47063 * 60.70185 * 1 2 3 18 18 H 1.09004 * 109.47246 * 180.69540 * 1 2 3 19 19 H 1.08991 * 109.47142 * 300.70291 * 1 2 3 20 20 H 1.09001 * 109.47671 * 297.39467 * 3 2 1 21 21 H 1.09006 * 109.47297 * 177.39187 * 3 2 1 22 22 H 0.97000 * 119.99307 * 359.97438 * 4 3 2 23 23 H 0.97000 * 120.00330 * 179.97438 * 8 7 5 24 24 H 1.08999 * 110.50934 * 359.86376 * 13 2 1 25 25 H 1.08997 * 110.50777 * 122.43361 * 13 2 1 26 26 H 1.08995 * 110.37857 * 142.80933 * 14 13 2 27 27 H 1.09010 * 110.37212 * 265.14795 * 14 13 2 28 28 H 1.08997 * 110.36791 * 281.67665 * 16 15 14 29 29 H 1.08994 * 110.37265 * 159.33736 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0647 1.4335 0.0000 4 7 1.5380 2.1512 1.1636 5 6 1.8826 3.4595 1.3746 6 1 2.5430 3.9623 0.6836 7 6 1.3831 4.1397 2.4768 8 7 0.5788 3.5269 3.3193 9 14 1.8595 5.9222 2.7690 10 1 2.7729 6.3739 1.6889 11 1 0.6382 6.7671 2.7695 12 1 2.5454 6.0428 4.0806 13 6 2.0715 -0.7798 -1.2190 14 6 2.8787 -1.9394 -0.5945 15 8 2.3119 -2.1165 0.7220 16 6 2.0741 -0.7807 1.2169 17 1 -0.3633 0.5029 -0.8963 18 1 -0.3634 -1.0276 0.0125 19 1 -0.3633 0.5247 0.8835 20 1 1.7487 1.9393 -0.9124 21 1 3.1536 1.4152 0.0468 22 1 0.9452 1.6995 1.7844 23 1 0.2301 4.0020 4.0897 24 1 1.2492 -1.1674 -1.8204 25 1 2.7181 -0.1433 -1.8230 26 1 2.7575 -2.8474 -1.1851 27 1 3.9328 -1.6715 -0.5209 28 1 3.0047 -0.3351 1.5683 29 1 1.3349 -0.7987 2.0176 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307339007.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:59 Heat of formation + Delta-G solvation = -45.134915 kcal Electronic energy + Delta-G solvation = -11678.190751 eV Core-core repulsion = 9601.277205 eV Total energy + Delta-G solvation = -2076.913546 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.44946 -35.26447 -32.89042 -30.44284 -29.21990 -26.24553 -25.10719 -22.98573 -21.85122 -18.87796 -17.17514 -15.84864 -15.40691 -14.78506 -14.45592 -13.79467 -13.34292 -13.11093 -12.75674 -12.26242 -11.92969 -11.40997 -11.13489 -11.00463 -10.83891 -10.49430 -10.35217 -10.21587 -9.87571 -9.64291 -9.37254 -8.87771 -6.91885 -5.76775 -3.05206 3.43473 3.49061 3.51352 4.29658 4.58714 4.86889 5.06072 5.20277 5.43271 5.51608 5.59716 5.74311 5.87607 5.93622 6.09598 6.14321 6.19840 6.23866 6.42211 6.44571 6.67307 6.78844 6.87036 7.12196 7.70531 8.42324 9.53672 10.11185 10.46305 11.46352 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.074962 B = 0.009530 C = 0.009375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.434877 B = 2937.377463 C = 2986.018203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.100 4.100 3 C 0.166 3.834 4 N -0.731 5.731 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.907 3.093 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.291 1.291 13 C -0.145 4.145 14 C 0.046 3.954 15 O -0.383 6.383 16 C 0.059 3.941 17 H 0.053 0.947 18 H 0.048 0.952 19 H 0.068 0.932 20 H 0.021 0.979 21 H 0.019 0.981 22 H 0.384 0.616 23 H 0.255 0.745 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.386 -8.286 -7.541 11.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.101 4.101 3 C 0.039 3.961 4 N -0.376 5.376 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.738 3.262 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.183 4.183 14 C -0.031 4.031 15 O -0.302 6.302 16 C -0.018 4.018 17 H 0.072 0.928 18 H 0.067 0.933 19 H 0.087 0.913 20 H 0.039 0.961 21 H 0.037 0.963 22 H 0.219 0.781 23 H 0.065 0.935 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.422 -8.321 -7.449 11.427 hybrid contribution 0.089 1.145 0.291 1.185 sum 2.511 -7.175 -7.157 10.441 Atomic orbital electron populations 1.21755 0.93455 1.00699 1.02830 1.22120 0.97032 0.96704 0.94256 1.20708 0.95596 0.88287 0.91543 1.42409 1.57719 1.10827 1.26631 1.19283 1.23310 0.87899 1.06576 0.91166 1.24733 1.00126 0.98380 0.97734 1.69660 1.36887 1.36190 1.15512 0.86116 0.77563 0.84910 0.77592 1.20585 1.21883 1.21861 1.23012 1.00181 0.97117 0.98025 1.23342 0.96818 0.98384 0.84568 1.89062 1.83141 1.27275 1.30767 1.23535 1.00654 0.81254 0.96328 0.92829 0.93274 0.91276 0.96095 0.96283 0.78099 0.93535 0.90886 0.90547 0.89791 0.92661 0.91746 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.10 37.16 0.30 -1.88 15 2 C -0.10 -1.71 0.75 -152.94 -0.11 -1.82 15 3 C 0.17 3.40 4.91 -4.04 -0.02 3.38 15 4 N -0.73 -18.52 5.15 -59.90 -0.31 -18.83 15 5 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 15 6 H 0.07 1.93 7.83 -52.49 -0.41 1.52 15 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 15 8 N -0.93 -28.31 13.06 55.49 0.72 -27.59 15 9 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 15 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 15 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 15 13 C -0.15 -2.00 6.38 -25.17 -0.16 -2.16 15 14 C 0.05 0.62 7.63 37.93 0.29 0.91 15 15 O -0.38 -6.44 11.65 -35.23 -0.41 -6.85 15 16 C 0.06 1.03 6.36 37.93 0.24 1.27 15 17 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 18 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 19 H 0.07 1.32 6.77 -51.93 -0.35 0.96 15 20 H 0.02 0.44 8.14 -51.93 -0.42 0.01 15 21 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 15 22 H 0.38 10.15 6.20 -40.82 -0.25 9.89 15 23 H 0.25 7.45 8.31 -40.82 -0.34 7.11 15 24 H 0.07 0.92 7.73 -51.93 -0.40 0.51 15 25 H 0.08 0.98 7.73 -51.93 -0.40 0.58 15 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 27 H 0.06 0.70 8.14 -51.92 -0.42 0.27 15 28 H 0.06 1.19 7.83 -51.93 -0.41 0.78 15 29 H 0.09 1.66 7.87 -51.93 -0.41 1.25 15 LS Contribution 239.42 15.07 3.61 3.61 Total: -1.00 -30.37 239.42 -5.42 -35.79 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -4.30 Total: 4.08 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 0.29 Total: -7.70 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.42 Total: -46.41 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.41 Total: -6.85 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.37 -5.42 -35.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307339007.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.344 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds