Wall clock time and date at job start Mon Mar 30 2020 01:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 110.45528 * 2 1 4 4 N 1.46506 * 109.47233 * 57.39542 * 3 2 1 5 5 C 1.36931 * 119.99939 * 179.97438 * 4 3 2 6 6 H 1.08000 * 120.00644 * 359.97438 * 5 4 3 7 7 C 1.38815 * 119.99715 * 179.97438 * 5 4 3 8 8 N 1.31611 * 120.00107 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99746 * 179.72150 * 7 5 4 10 10 H 1.48497 * 109.47323 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46790 * 120.00304 * 9 7 5 12 12 H 1.48501 * 109.47364 * 240.00332 * 9 7 5 13 13 C 1.54510 * 110.51484 * 237.39352 * 2 1 3 14 14 C 1.54473 * 104.06513 * 241.22060 * 13 2 1 15 15 O 1.44425 * 104.80478 * 23.97353 * 14 13 2 16 16 C 1.44428 * 105.27854 * 319.49535 * 15 14 13 17 17 H 1.09006 * 109.47063 * 60.70185 * 1 2 3 18 18 H 1.09004 * 109.47246 * 180.69540 * 1 2 3 19 19 H 1.08991 * 109.47142 * 300.70291 * 1 2 3 20 20 H 1.09001 * 109.47671 * 297.39467 * 3 2 1 21 21 H 1.09006 * 109.47297 * 177.39187 * 3 2 1 22 22 H 0.97000 * 119.99307 * 359.97438 * 4 3 2 23 23 H 0.97000 * 120.00330 * 179.97438 * 8 7 5 24 24 H 1.08999 * 110.50934 * 359.86376 * 13 2 1 25 25 H 1.08997 * 110.50777 * 122.43361 * 13 2 1 26 26 H 1.08995 * 110.37857 * 142.80933 * 14 13 2 27 27 H 1.09010 * 110.37212 * 265.14795 * 14 13 2 28 28 H 1.08997 * 110.36791 * 281.67665 * 16 15 14 29 29 H 1.08994 * 110.37265 * 159.33736 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0647 1.4335 0.0000 4 7 1.5380 2.1512 1.1636 5 6 1.8826 3.4595 1.3746 6 1 2.5430 3.9623 0.6836 7 6 1.3831 4.1397 2.4768 8 7 0.5788 3.5269 3.3193 9 14 1.8595 5.9222 2.7690 10 1 2.7729 6.3739 1.6889 11 1 0.6382 6.7671 2.7695 12 1 2.5454 6.0428 4.0806 13 6 2.0715 -0.7798 -1.2190 14 6 2.8787 -1.9394 -0.5945 15 8 2.3119 -2.1165 0.7220 16 6 2.0741 -0.7807 1.2169 17 1 -0.3633 0.5029 -0.8963 18 1 -0.3634 -1.0276 0.0125 19 1 -0.3633 0.5247 0.8835 20 1 1.7487 1.9393 -0.9124 21 1 3.1536 1.4152 0.0468 22 1 0.9452 1.6995 1.7844 23 1 0.2301 4.0020 4.0897 24 1 1.2492 -1.1674 -1.8204 25 1 2.7181 -0.1433 -1.8230 26 1 2.7575 -2.8474 -1.1851 27 1 3.9328 -1.6715 -0.5209 28 1 3.0047 -0.3351 1.5683 29 1 1.3349 -0.7987 2.0176 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307339007.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:58 Heat of formation + Delta-G solvation = -65.985520 kcal Electronic energy + Delta-G solvation = -11679.094901 eV Core-core repulsion = 9601.277205 eV Total energy + Delta-G solvation = -2077.817697 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.75879 -36.94951 -34.67656 -32.27550 -30.52010 -27.75684 -26.85272 -24.72128 -23.18710 -20.32628 -19.17965 -17.18513 -16.83885 -16.38194 -16.08075 -15.38242 -15.08488 -14.77109 -14.21409 -13.78039 -13.35171 -12.97254 -12.91223 -12.66946 -12.26971 -12.12179 -12.07136 -11.66408 -11.52825 -11.37918 -10.95750 -10.64729 -9.00093 -7.95733 -5.24330 1.47507 1.48158 1.58328 2.55630 3.06856 3.37817 3.56413 3.81388 3.92815 4.17021 4.28156 4.36627 4.41855 4.72190 4.75689 4.83592 4.88970 4.93615 5.03243 5.09094 5.17551 5.28465 5.43081 5.49755 5.87635 6.26808 7.33497 8.08860 8.32950 9.28235 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.074962 B = 0.009530 C = 0.009375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.434877 B = 2937.377463 C = 2986.018203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.098 4.098 3 C 0.165 3.835 4 N -0.742 5.742 5 C -0.246 4.246 6 H 0.076 0.924 7 C -0.075 4.075 8 N -0.970 5.970 9 Si 0.974 3.026 10 H -0.266 1.266 11 H -0.293 1.293 12 H -0.294 1.294 13 C -0.137 4.137 14 C 0.041 3.959 15 O -0.396 6.396 16 C 0.063 3.937 17 H 0.060 0.940 18 H 0.066 0.934 19 H 0.038 0.962 20 H 0.025 0.975 21 H 0.021 0.979 22 H 0.376 0.624 23 H 0.251 0.749 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.114 0.886 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.029 -8.618 -9.068 12.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.099 4.099 3 C 0.039 3.961 4 N -0.386 5.386 5 C -0.378 4.378 6 H 0.094 0.906 7 C -0.267 4.267 8 N -0.621 5.621 9 Si 0.803 3.197 10 H -0.190 1.190 11 H -0.220 1.220 12 H -0.221 1.221 13 C -0.175 4.175 14 C -0.036 4.036 15 O -0.315 6.315 16 C -0.014 4.014 17 H 0.079 0.921 18 H 0.085 0.915 19 H 0.057 0.943 20 H 0.043 0.957 21 H 0.038 0.962 22 H 0.209 0.791 23 H 0.060 0.940 24 H 0.110 0.890 25 H 0.107 0.893 26 H 0.132 0.868 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.091 -8.667 -9.020 12.885 hybrid contribution -0.079 1.185 0.706 1.382 sum 3.012 -7.482 -8.314 11.583 Atomic orbital electron populations 1.21689 0.93320 1.01462 1.01675 1.22065 0.97077 0.94826 0.95902 1.20858 0.95487 0.90026 0.89726 1.42603 1.57686 1.10406 1.27897 1.19690 1.22584 0.89149 1.06356 0.90650 1.25558 1.00701 1.02562 0.97872 1.69816 1.38430 1.37769 1.16083 0.85065 0.77192 0.79953 0.77481 1.19028 1.22016 1.22073 1.23000 1.00992 0.96852 0.96649 1.23614 0.97019 0.99708 0.83210 1.89052 1.83510 1.26400 1.32579 1.23346 0.99554 0.82052 0.96436 0.92066 0.91458 0.94330 0.95705 0.96151 0.79122 0.93969 0.88991 0.89270 0.86803 0.91865 0.93229 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.04 8.10 71.98 0.58 -3.46 15 2 C -0.10 -3.21 0.75 -51.17 -0.04 -3.24 15 3 C 0.17 6.63 4.91 86.38 0.42 7.05 15 4 N -0.74 -37.86 5.15 -343.44 -1.77 -39.63 15 5 C -0.25 -13.83 9.99 84.04 0.84 -12.99 15 6 H 0.08 4.07 7.83 -2.91 -0.02 4.05 15 7 C -0.07 -4.32 5.50 84.86 0.47 -3.85 15 8 N -0.97 -59.80 13.06 21.65 0.28 -59.52 15 9 Si 0.97 46.35 29.55 68.60 2.03 48.37 15 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 15 11 H -0.29 -13.90 7.11 99.48 0.71 -13.20 15 12 H -0.29 -13.96 7.11 99.48 0.71 -13.26 15 13 C -0.14 -3.33 6.38 31.61 0.20 -3.12 15 14 C 0.04 0.96 7.63 72.48 0.55 1.52 15 15 O -0.40 -12.60 11.65 -148.98 -1.74 -14.34 15 16 C 0.06 2.19 6.36 72.49 0.46 2.65 15 17 H 0.06 1.87 8.14 -2.38 -0.02 1.85 15 18 H 0.07 1.92 8.14 -2.38 -0.02 1.90 15 19 H 0.04 1.48 6.77 -2.39 -0.02 1.46 15 20 H 0.03 0.99 8.14 -2.39 -0.02 0.97 15 21 H 0.02 0.82 8.08 -2.38 -0.02 0.80 15 22 H 0.38 20.32 6.20 -92.71 -0.57 19.75 15 23 H 0.25 14.97 8.31 -92.71 -0.77 14.20 15 24 H 0.09 1.92 7.73 -2.39 -0.02 1.91 15 25 H 0.09 1.96 7.73 -2.39 -0.02 1.95 15 26 H 0.11 2.05 8.14 -2.39 -0.02 2.03 15 27 H 0.06 1.40 8.14 -2.38 -0.02 1.39 15 28 H 0.05 1.85 7.83 -2.39 -0.02 1.83 15 29 H 0.08 2.90 7.87 -2.39 -0.02 2.88 15 Total: -1.00 -64.07 239.42 2.84 -61.22 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.55 Total: 19.35 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 3.49 Total: -15.46 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -1.48 Total: -99.15 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -1.74 Total: -14.34 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.37 kcal Total: -64.07 2.84 -61.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307339007.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.761 kcal (2) G-P(sol) polarization free energy of solvation -64.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds