Wall clock time and date at job start Mon Mar 30 2020 02:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46908 * 110.99683 * 2 1 4 4 C 1.50700 * 109.46922 * 66.04429 * 3 2 1 5 5 H 1.07995 * 120.00545 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99442 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99682 * 179.97438 * 6 4 3 8 8 Si 1.86791 * 120.00333 * 359.97438 * 6 4 3 9 9 H 1.48505 * 109.46951 * 90.00374 * 8 6 4 10 10 H 1.48498 * 109.47266 * 210.00161 * 8 6 4 11 11 H 1.48497 * 109.47198 * 330.00244 * 8 6 4 12 12 C 1.46901 * 111.00288 * 236.04793 * 2 1 3 13 13 H 1.08993 * 112.90591 * 75.20408 * 12 2 1 14 14 C 1.53785 * 113.60991 * 206.45522 * 12 2 1 15 15 C 1.53776 * 87.07661 * 139.97777 * 14 12 2 16 16 C 1.53779 * 87.08645 * 334.56588 * 15 14 12 17 17 H 1.09002 * 113.61731 * 139.97987 * 16 15 14 18 18 O 1.42898 * 113.68762 * 270.87545 * 16 15 14 19 19 H 1.09001 * 109.46451 * 183.95538 * 1 2 3 20 20 H 1.08996 * 109.47570 * 303.95365 * 1 2 3 21 21 H 1.09002 * 109.46770 * 63.95655 * 1 2 3 22 22 H 1.08993 * 109.46888 * 186.04566 * 3 2 1 23 23 H 1.09003 * 109.46901 * 306.04601 * 3 2 1 24 24 H 0.96995 * 120.00280 * 179.97438 * 7 6 4 25 25 H 1.08998 * 113.61391 * 254.52457 * 14 12 2 26 26 H 1.08999 * 113.61409 * 25.34638 * 14 12 2 27 27 H 1.09003 * 113.61687 * 220.01420 * 15 14 12 28 28 H 1.09009 * 113.61565 * 89.11769 * 15 14 12 29 29 H 0.96697 * 114.00154 * 279.05796 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0738 1.5116 2.0484 6 6 2.0266 3.3496 1.5284 7 7 1.7133 3.9394 2.6613 8 14 2.9998 4.2763 0.2309 9 1 2.0630 4.9799 -0.6817 10 1 3.8860 5.2680 0.8913 11 1 3.8238 3.3177 -0.5483 12 6 1.9956 -0.7659 -1.1376 13 1 1.9082 -0.2332 -2.0845 14 6 3.3941 -1.3553 -0.8889 15 6 2.9045 -2.6190 -1.6156 16 6 1.4817 -2.2142 -1.1957 17 1 0.7335 -2.3812 -1.9706 18 8 1.0888 -2.7337 0.0762 19 1 -0.3632 -1.0253 0.0709 20 1 -0.3634 0.5739 0.8524 21 1 -0.3633 0.4512 -0.9233 22 1 3.0796 1.3445 -0.1082 23 1 1.5610 1.9274 -0.8309 24 1 1.9878 4.8555 2.8233 25 1 4.1897 -0.8290 -1.4161 26 1 3.6190 -1.5158 0.1655 27 1 3.2477 -3.5467 -1.1576 28 1 3.0658 -2.5930 -2.6934 29 1 0.7866 -3.6518 0.0498 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307521132.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:59 Heat of formation + Delta-G solvation = -16.645936 kcal Electronic energy + Delta-G solvation = -11710.601965 eV Core-core repulsion = 9634.923793 eV Total energy + Delta-G solvation = -2075.678172 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.29835 -35.42632 -33.89850 -32.16212 -27.87333 -25.78721 -24.49872 -23.13213 -20.42778 -19.14075 -16.92335 -16.63541 -15.22932 -14.77800 -14.52443 -13.78033 -13.71001 -12.71964 -12.32500 -12.18056 -11.93807 -11.63766 -11.03143 -10.89368 -10.59883 -10.52859 -10.51010 -9.83619 -9.56264 -9.46753 -9.11478 -8.51437 -7.21298 -5.98704 -3.94957 3.31720 3.39018 3.41982 4.29631 4.47509 4.79940 4.87166 5.08932 5.21197 5.31914 5.38798 5.75053 5.81932 5.94786 6.23051 6.29421 6.38566 6.52147 6.71846 6.86846 6.94764 7.10620 7.69658 7.87911 8.08817 8.21898 8.76268 9.11606 9.63590 11.14718 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.058973 B = 0.011467 C = 0.010366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.681581 B = 2441.186156 C = 2700.606836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.506 5.506 3 C 0.159 3.841 4 C -0.505 4.505 5 H 0.081 0.919 6 C 0.066 3.934 7 N -0.902 5.902 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.267 1.267 12 C 0.059 3.941 13 H 0.062 0.938 14 C -0.118 4.118 15 C -0.175 4.175 16 C 0.090 3.910 17 H 0.055 0.945 18 O -0.523 6.523 19 H 0.059 0.941 20 H 0.076 0.924 21 H 0.002 0.998 22 H 0.027 0.973 23 H -0.020 1.020 24 H 0.263 0.737 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.574 -11.492 -9.663 15.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.230 5.230 3 C 0.033 3.967 4 C -0.543 4.543 5 H 0.099 0.901 6 C -0.135 4.135 7 N -0.542 5.542 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.192 1.192 12 C -0.051 4.051 13 H 0.079 0.921 14 C -0.156 4.156 15 C -0.213 4.213 16 C 0.030 3.970 17 H 0.073 0.927 18 O -0.326 6.326 19 H 0.078 0.922 20 H 0.094 0.906 21 H 0.020 0.980 22 H 0.045 0.955 23 H -0.003 1.003 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.113 0.887 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 0.920 -10.928 -8.928 14.141 hybrid contribution 0.136 0.562 -1.654 1.752 sum 1.056 -10.365 -10.581 14.850 Atomic orbital electron populations 1.22235 0.88172 1.00622 0.99888 1.62097 1.07345 1.15583 1.37968 1.20207 0.95259 0.84482 0.96792 1.21069 1.35169 0.97085 1.00975 0.90092 1.24906 0.95860 0.97371 0.95326 1.69898 1.47153 1.13186 1.23955 0.86859 0.80652 0.79997 0.82222 1.20443 1.21176 1.19230 1.23278 0.96100 0.91831 0.93880 0.92085 1.22868 0.95985 0.95085 1.01688 1.23494 0.98348 0.99205 1.00250 1.22772 0.93478 0.95307 0.85474 0.92713 1.86756 1.86501 1.30758 1.28583 0.92220 0.90568 0.97985 0.95481 1.00268 0.92760 0.92256 0.88686 0.91011 0.90127 0.78925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 9.02 60.07 0.54 1.36 15 2 N -0.51 -11.42 4.40 -235.34 -1.03 -12.46 15 3 C 0.16 4.08 3.76 -4.97 -0.02 4.06 15 4 C -0.50 -15.00 9.01 -34.44 -0.31 -15.31 15 5 H 0.08 2.62 7.37 -52.49 -0.39 2.24 15 6 C 0.07 1.99 5.47 -17.82 -0.10 1.89 15 7 N -0.90 -28.41 13.96 55.43 0.77 -27.64 15 8 Si 0.88 22.17 27.47 -169.99 -4.67 17.51 15 9 H -0.28 -6.92 7.11 56.52 0.40 -6.52 15 10 H -0.29 -7.14 7.11 56.52 0.40 -6.73 15 11 H -0.27 -6.54 6.54 56.52 0.37 -6.17 15 12 C 0.06 1.07 3.15 -66.90 -0.21 0.85 15 13 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 14 C -0.12 -1.94 7.60 -25.92 -0.20 -2.14 15 15 C -0.17 -2.22 7.91 -25.92 -0.21 -2.42 15 16 C 0.09 1.30 4.37 -25.92 -0.11 1.18 15 17 H 0.06 0.69 8.14 -51.93 -0.42 0.26 15 18 O -0.52 -7.92 11.64 -35.23 -0.41 -8.33 15 19 H 0.06 1.12 6.12 -51.93 -0.32 0.80 15 20 H 0.08 1.77 6.76 -51.93 -0.35 1.42 15 21 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 15 22 H 0.03 0.70 6.97 -51.93 -0.36 0.34 15 23 H -0.02 -0.52 7.55 -51.93 -0.39 -0.91 15 24 H 0.26 7.72 8.31 -40.82 -0.34 7.38 15 25 H 0.06 0.92 8.14 -51.93 -0.42 0.49 15 26 H 0.09 1.75 8.14 -51.93 -0.42 1.33 15 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 28 H 0.08 0.87 8.14 -51.92 -0.42 0.45 15 29 H 0.37 3.53 9.12 45.56 0.42 3.95 15 LS Contribution 237.69 15.07 3.58 3.58 Total: -1.00 -32.98 237.69 -5.89 -38.87 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -3.52 Total: -1.00 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -0.61 Total: -10.52 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: -0.26 Total: -40.10 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.41 Total: -8.33 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -32.98 -5.89 -38.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307521132.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.221 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds