Wall clock time and date at job start Mon Mar 30 2020 02:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46908 * 110.99683 * 2 1 4 4 C 1.50700 * 109.46922 * 66.04429 * 3 2 1 5 5 H 1.07995 * 120.00545 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99442 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99682 * 179.97438 * 6 4 3 8 8 Si 1.86791 * 120.00333 * 359.97438 * 6 4 3 9 9 H 1.48505 * 109.46951 * 90.00374 * 8 6 4 10 10 H 1.48498 * 109.47266 * 210.00161 * 8 6 4 11 11 H 1.48497 * 109.47198 * 330.00244 * 8 6 4 12 12 C 1.46901 * 111.00288 * 236.04793 * 2 1 3 13 13 H 1.08993 * 112.90591 * 75.20408 * 12 2 1 14 14 C 1.53785 * 113.60991 * 206.45522 * 12 2 1 15 15 C 1.53776 * 87.07661 * 139.97777 * 14 12 2 16 16 C 1.53779 * 87.08645 * 334.56588 * 15 14 12 17 17 H 1.09002 * 113.61731 * 139.97987 * 16 15 14 18 18 O 1.42898 * 113.68762 * 270.87545 * 16 15 14 19 19 H 1.09001 * 109.46451 * 183.95538 * 1 2 3 20 20 H 1.08996 * 109.47570 * 303.95365 * 1 2 3 21 21 H 1.09002 * 109.46770 * 63.95655 * 1 2 3 22 22 H 1.08993 * 109.46888 * 186.04566 * 3 2 1 23 23 H 1.09003 * 109.46901 * 306.04601 * 3 2 1 24 24 H 0.96995 * 120.00280 * 179.97438 * 7 6 4 25 25 H 1.08998 * 113.61391 * 254.52457 * 14 12 2 26 26 H 1.08999 * 113.61409 * 25.34638 * 14 12 2 27 27 H 1.09003 * 113.61687 * 220.01420 * 15 14 12 28 28 H 1.09009 * 113.61565 * 89.11769 * 15 14 12 29 29 H 0.96697 * 114.00154 * 279.05796 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0738 1.5116 2.0484 6 6 2.0266 3.3496 1.5284 7 7 1.7133 3.9394 2.6613 8 14 2.9998 4.2763 0.2309 9 1 2.0630 4.9799 -0.6817 10 1 3.8860 5.2680 0.8913 11 1 3.8238 3.3177 -0.5483 12 6 1.9956 -0.7659 -1.1376 13 1 1.9082 -0.2332 -2.0845 14 6 3.3941 -1.3553 -0.8889 15 6 2.9045 -2.6190 -1.6156 16 6 1.4817 -2.2142 -1.1957 17 1 0.7335 -2.3812 -1.9706 18 8 1.0888 -2.7337 0.0762 19 1 -0.3632 -1.0253 0.0709 20 1 -0.3634 0.5739 0.8524 21 1 -0.3633 0.4512 -0.9233 22 1 3.0796 1.3445 -0.1082 23 1 1.5610 1.9274 -0.8309 24 1 1.9878 4.8555 2.8233 25 1 4.1897 -0.8290 -1.4161 26 1 3.6190 -1.5158 0.1655 27 1 3.2477 -3.5467 -1.1576 28 1 3.0658 -2.5930 -2.6934 29 1 0.7866 -3.6518 0.0498 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307521132.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:59 Heat of formation + Delta-G solvation = -43.274044 kcal Electronic energy + Delta-G solvation = -11711.756646 eV Core-core repulsion = 9634.923793 eV Total energy + Delta-G solvation = -2076.832853 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.56485 -37.02192 -35.25864 -34.31125 -29.93972 -27.33045 -25.74425 -24.79901 -22.25182 -20.41487 -18.99927 -17.92260 -16.60304 -16.46719 -16.17116 -15.52282 -15.33588 -14.49992 -13.88114 -13.78912 -13.46911 -13.13461 -12.78930 -12.67006 -12.38179 -12.04491 -11.78569 -11.72853 -11.46157 -10.95089 -10.80492 -10.50639 -8.93541 -8.29576 -6.32998 1.31585 1.34359 1.45762 2.33238 3.02743 3.15048 3.45320 3.70504 3.87731 3.98119 4.24854 4.42813 4.63825 4.70745 4.75826 4.89968 4.96657 4.99484 5.09695 5.19874 5.35088 5.46092 5.56626 6.02683 6.43532 6.70309 6.74079 7.12435 7.30675 8.87539 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.058973 B = 0.011467 C = 0.010366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.681581 B = 2441.186156 C = 2700.606836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.528 5.528 3 C 0.171 3.829 4 C -0.518 4.518 5 H 0.033 0.967 6 C 0.005 3.995 7 N -0.949 5.949 8 Si 0.951 3.049 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.251 1.251 12 C 0.035 3.965 13 H 0.072 0.928 14 C -0.128 4.128 15 C -0.149 4.149 16 C 0.097 3.903 17 H 0.084 0.916 18 O -0.553 6.553 19 H 0.083 0.917 20 H 0.038 0.962 21 H 0.013 0.987 22 H 0.026 0.974 23 H -0.018 1.018 24 H 0.267 0.733 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.350 -12.539 -12.330 17.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.251 5.251 3 C 0.044 3.956 4 C -0.556 4.556 5 H 0.052 0.948 6 C -0.191 4.191 7 N -0.590 5.590 8 Si 0.774 3.226 9 H -0.191 1.191 10 H -0.203 1.203 11 H -0.174 1.174 12 C -0.074 4.074 13 H 0.089 0.911 14 C -0.166 4.166 15 C -0.187 4.187 16 C 0.037 3.963 17 H 0.101 0.899 18 O -0.360 6.360 19 H 0.101 0.899 20 H 0.057 0.943 21 H 0.031 0.969 22 H 0.044 0.956 23 H 0.000 1.000 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.127 0.873 29 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 1.683 -12.022 -11.604 16.793 hybrid contribution -0.165 0.814 -0.733 1.108 sum 1.518 -11.208 -12.337 16.737 Atomic orbital electron populations 1.22128 0.87728 1.01487 0.98741 1.61987 1.08003 1.13919 1.41237 1.19926 0.95095 0.86290 0.94276 1.21293 1.34823 0.97578 1.01938 0.94844 1.25899 0.96992 0.98366 0.97890 1.70057 1.48638 1.13890 1.26410 0.85662 0.79230 0.78605 0.79124 1.19091 1.20345 1.17441 1.23653 0.97771 0.93411 0.92548 0.91054 1.22878 0.95457 0.97611 1.00696 1.23407 0.96086 0.97703 1.01479 1.22754 0.95405 0.92352 0.85794 0.89863 1.86680 1.86814 1.32999 1.29466 0.89871 0.94269 0.96858 0.95616 1.00017 0.92371 0.91635 0.91598 0.89550 0.87296 0.76108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.99 9.02 127.69 1.15 3.14 15 2 N -0.53 -23.71 4.40 -898.48 -3.95 -27.66 15 3 C 0.17 8.80 3.76 85.56 0.32 9.13 15 4 C -0.52 -31.85 9.01 25.60 0.23 -31.62 15 5 H 0.03 2.30 7.37 -2.91 -0.02 2.28 15 6 C 0.01 0.33 5.47 84.66 0.46 0.80 15 7 N -0.95 -61.44 13.96 21.45 0.30 -61.14 15 8 Si 0.95 45.66 27.47 68.60 1.88 47.54 15 9 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 10 H -0.28 -12.92 7.11 99.48 0.71 -12.22 15 11 H -0.25 -11.27 6.54 99.48 0.65 -10.62 15 12 C 0.03 1.19 3.15 45.44 0.14 1.34 15 13 H 0.07 2.29 8.14 -2.39 -0.02 2.28 15 14 C -0.13 -3.97 7.60 31.12 0.24 -3.73 15 15 C -0.15 -3.17 7.91 31.12 0.25 -2.92 15 16 C 0.10 2.46 4.37 31.12 0.14 2.59 15 17 H 0.08 1.68 8.14 -2.39 -0.02 1.66 15 18 O -0.55 -15.43 11.64 -148.98 -1.73 -17.16 15 19 H 0.08 3.05 6.12 -2.39 -0.01 3.03 15 20 H 0.04 1.89 6.76 -2.39 -0.02 1.87 15 21 H 0.01 0.51 8.14 -2.39 -0.02 0.49 15 22 H 0.03 1.32 6.97 -2.39 -0.02 1.30 15 23 H -0.02 -0.89 7.55 -2.39 -0.02 -0.91 15 24 H 0.27 16.02 8.31 -92.71 -0.77 15.25 15 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 15 26 H 0.07 2.41 8.14 -2.39 -0.02 2.39 15 27 H 0.09 1.63 8.14 -2.39 -0.02 1.61 15 28 H 0.11 1.77 8.14 -2.38 -0.02 1.75 15 29 H 0.39 6.38 9.12 -74.06 -0.68 5.70 15 Total: -1.00 -73.28 237.69 -0.18 -73.46 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 0.40 Total: 6.26 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 2.93 Total: -21.29 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -3.65 Total: -88.81 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -1.73 Total: -17.16 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.88 Total: 47.54 kcal Total: -73.28 -0.18 -73.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307521132.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.187 kcal (2) G-P(sol) polarization free energy of solvation -73.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds