Wall clock time and date at job start Mon Mar 30 2020 02:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47015 * 2 1 4 4 C 1.36932 * 119.99977 * 95.97803 * 3 2 1 5 5 H 1.08000 * 119.99921 * 169.76541 * 4 3 2 6 6 C 1.38807 * 120.00040 * 349.76128 * 4 3 2 7 7 N 1.31619 * 120.00219 * 333.23776 * 6 4 3 8 8 Si 1.86797 * 119.99950 * 153.23744 * 6 4 3 9 9 H 1.48506 * 109.47289 * 265.29163 * 8 6 4 10 10 H 1.48503 * 109.47363 * 145.29077 * 8 6 4 11 11 H 1.48501 * 109.47210 * 25.29074 * 8 6 4 12 12 C 1.46500 * 119.99740 * 275.97726 * 3 2 1 13 13 H 1.09002 * 115.55276 * 334.27876 * 12 3 2 14 14 C 1.53002 * 117.49687 * 188.60914 * 12 3 2 15 15 C 1.52999 * 117.49724 * 119.98794 * 12 3 2 16 16 H 1.09003 * 117.49683 * 214.97755 * 15 12 3 17 17 C 1.52998 * 117.50198 * 359.97438 * 15 12 3 18 18 O 1.42895 * 109.47515 * 185.00160 * 17 15 12 19 19 H 1.09001 * 109.46693 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47174 * 299.99693 * 1 2 3 21 21 H 1.08996 * 109.47256 * 60.00083 * 1 2 3 22 22 H 1.09001 * 109.47174 * 240.00307 * 2 1 3 23 23 H 1.08996 * 109.47256 * 119.99917 * 2 1 3 24 24 H 0.96995 * 120.00188 * 179.97438 * 7 6 4 25 25 H 1.08995 * 117.50068 * 359.97438 * 14 12 3 26 26 H 1.08996 * 117.49719 * 144.99990 * 14 12 3 27 27 H 1.09002 * 109.46985 * 305.00050 * 17 15 12 28 28 H 1.09004 * 109.47005 * 65.00029 * 17 15 12 29 29 H 0.96702 * 114.00186 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3630 1.9856 1.1794 5 1 2.8752 2.9363 1.1695 6 6 2.0539 1.3763 2.3877 7 7 1.0290 0.5544 2.4672 8 14 3.0926 1.7229 3.9011 9 1 4.1346 0.6737 4.0373 10 1 2.2264 1.7198 5.1074 11 1 3.7425 3.0509 3.7619 12 6 2.1379 2.1159 -1.2619 13 1 2.2772 1.5021 -2.1518 14 6 2.8393 3.4751 -1.2242 15 6 1.3224 3.4018 -1.4106 16 1 0.9249 3.6343 -2.3986 17 6 0.4440 3.8219 -0.2304 18 8 -0.3242 4.9708 -0.5935 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 0.8132 0.1283 3.3114 25 1 3.2113 3.8230 -0.2606 26 1 3.4400 3.7556 -2.0894 27 1 -0.2272 3.0042 0.0321 28 1 1.0755 4.0626 0.6249 29 1 -0.9059 5.2929 0.1085 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307636427.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:13 Heat of formation + Delta-G solvation = -16.425923 kcal Electronic energy + Delta-G solvation = -12008.422363 eV Core-core repulsion = 9932.753732 eV Total energy + Delta-G solvation = -2075.668631 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.57491 -37.24135 -35.60913 -32.79407 -30.39845 -27.66320 -26.07140 -23.26235 -22.21853 -20.78310 -18.45812 -17.93237 -17.22075 -16.20143 -15.66004 -15.34784 -14.80143 -14.34835 -13.83505 -13.78008 -13.20889 -12.80914 -12.67864 -12.39169 -12.07934 -12.02983 -11.69241 -11.32800 -11.24281 -11.15030 -10.48250 -10.21193 -8.67807 -7.82331 -5.11770 1.46384 1.51785 1.57063 2.51930 3.01374 3.39677 3.44449 3.55652 4.28869 4.38859 4.54019 4.64507 4.71501 4.84090 4.97639 5.02571 5.05005 5.17041 5.23511 5.33709 5.50027 5.69988 5.76435 6.17725 6.35728 6.92572 7.21575 7.92338 8.32677 9.18909 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.033774 B = 0.016759 C = 0.014744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.845699 B = 1670.321924 C = 1898.623745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.171 3.829 3 N -0.576 5.576 4 C -0.253 4.253 5 H 0.076 0.924 6 C -0.043 4.043 7 N -0.909 5.909 8 Si 0.946 3.054 9 H -0.292 1.292 10 H -0.300 1.300 11 H -0.276 1.276 12 C 0.123 3.877 13 H 0.120 0.880 14 C -0.184 4.184 15 C -0.200 4.200 16 H 0.103 0.897 17 C 0.136 3.864 18 O -0.593 6.593 19 H 0.034 0.966 20 H 0.064 0.936 21 H 0.019 0.981 22 H 0.030 0.970 23 H 0.054 0.946 24 H 0.247 0.753 25 H 0.079 0.921 26 H 0.111 0.889 27 H 0.025 0.975 28 H 0.035 0.965 29 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.415 2.700 -4.812 5.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.046 3.954 3 N -0.293 5.293 4 C -0.382 4.382 5 H 0.094 0.906 6 C -0.239 4.239 7 N -0.555 5.555 8 Si 0.776 3.224 9 H -0.219 1.219 10 H -0.227 1.227 11 H -0.201 1.201 12 C 0.013 3.987 13 H 0.137 0.863 14 C -0.222 4.222 15 C -0.222 4.222 16 H 0.121 0.879 17 C 0.059 3.941 18 O -0.400 6.400 19 H 0.053 0.947 20 H 0.083 0.917 21 H 0.038 0.962 22 H 0.048 0.952 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.098 0.902 26 H 0.130 0.870 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.695 2.483 -5.198 5.802 hybrid contribution -0.049 0.180 1.651 1.661 sum 0.646 2.663 -3.547 4.483 Atomic orbital electron populations 1.22172 0.98525 0.98861 1.00221 1.20640 0.93026 0.83887 0.97810 1.43951 1.73798 1.10278 1.01287 1.19408 1.29741 1.05088 0.83955 0.90648 1.25285 0.98261 1.01023 0.99342 1.70300 1.25114 1.35116 1.24984 0.85565 0.78993 0.77672 0.80140 1.21914 1.22685 1.20063 1.21462 1.00714 0.86480 0.90013 0.86277 1.23321 0.94009 1.02284 1.02592 1.22783 0.92590 1.08394 0.98431 0.87944 1.21256 0.92152 0.85525 0.95217 1.86336 1.60500 1.47981 1.45226 0.94661 0.91743 0.96155 0.95161 0.92773 0.94361 0.90214 0.87050 0.95630 0.94718 0.76292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.25 9.75 71.98 0.70 -5.54 15 2 C 0.17 7.96 5.64 86.38 0.49 8.44 15 3 N -0.58 -27.24 2.59 -678.03 -1.76 -29.00 15 4 C -0.25 -12.98 7.34 84.03 0.62 -12.36 15 5 H 0.08 3.88 5.42 -2.91 -0.02 3.86 15 6 C -0.04 -2.29 4.81 84.86 0.41 -1.88 15 7 N -0.91 -49.65 8.66 21.65 0.19 -49.46 15 8 Si 0.95 43.57 29.63 68.60 2.03 45.60 15 9 H -0.29 -13.50 7.11 99.48 0.71 -12.79 15 10 H -0.30 -13.99 7.11 99.48 0.71 -13.28 15 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 12 C 0.12 4.91 6.59 44.99 0.30 5.21 15 13 H 0.12 4.15 8.14 -2.39 -0.02 4.13 15 14 C -0.18 -6.73 9.50 30.60 0.29 -6.44 15 15 C -0.20 -7.74 6.06 -10.79 -0.07 -7.81 15 16 H 0.10 3.70 8.14 -2.39 -0.02 3.68 15 17 C 0.14 5.67 6.10 71.98 0.44 6.11 15 18 O -0.59 -21.70 13.66 -148.98 -2.03 -23.73 15 19 H 0.03 1.43 8.14 -2.39 -0.02 1.41 15 20 H 0.06 3.34 6.10 -2.39 -0.01 3.33 15 21 H 0.02 0.85 8.14 -2.39 -0.02 0.83 15 22 H 0.03 1.25 8.12 -2.39 -0.02 1.23 15 23 H 0.05 2.82 6.06 -2.39 -0.01 2.80 15 24 H 0.25 13.29 8.31 -92.71 -0.77 12.52 15 25 H 0.08 3.23 5.92 -2.39 -0.01 3.22 15 26 H 0.11 3.34 8.14 -2.39 -0.02 3.33 15 27 H 0.03 1.20 8.14 -2.39 -0.02 1.18 15 28 H 0.03 1.57 6.45 -2.38 -0.02 1.56 15 29 H 0.39 10.62 9.12 -74.06 -0.68 9.95 15 Total: -1.00 -57.62 236.00 2.07 -55.55 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.46 Total: 15.31 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 3.17 Total: -14.27 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -1.57 Total: -78.46 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -2.03 Total: -23.73 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -57.62 2.07 -55.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307636427.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.128 kcal (2) G-P(sol) polarization free energy of solvation -57.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds