Wall clock time and date at job start Mon Mar 30 2020 02:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.53939 * 113.73166 * 248.77057 * 3 2 1 5 5 N 1.48197 * 86.09578 * 221.95447 * 4 3 2 6 6 C 1.46903 * 111.06728 * 137.51890 * 5 4 3 7 7 C 1.53007 * 109.46717 * 90.56483 * 6 5 4 8 8 C 1.50707 * 109.46606 * 179.97438 * 7 6 5 9 9 H 1.07995 * 120.00035 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99520 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00132 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99834 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46892 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47223 * 120.00087 * 12 10 8 15 15 H 1.48500 * 109.46802 * 239.99939 * 12 10 8 16 16 C 1.47957 * 90.79818 * 24.60113 * 5 4 3 17 17 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 18 18 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 19 19 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 20 20 H 1.08999 * 112.93495 * 20.33486 * 3 2 1 21 21 H 1.08997 * 113.75902 * 336.23639 * 4 3 2 22 22 H 1.08997 * 113.76010 * 107.60384 * 4 3 2 23 23 H 1.09000 * 109.47007 * 210.56407 * 6 5 4 24 24 H 1.09000 * 109.47171 * 330.56793 * 6 5 4 25 25 H 1.09000 * 109.47320 * 299.99733 * 7 6 5 26 26 H 1.09000 * 109.47046 * 60.00234 * 7 6 5 27 27 H 0.97005 * 119.99728 * 180.02562 * 11 10 8 28 28 H 1.08997 * 113.75810 * 221.08263 * 16 5 4 29 29 H 1.09004 * 113.86199 * 89.73076 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.7285 1.6638 -1.3136 5 7 3.7862 2.2502 -0.4571 6 6 5.1233 1.9071 -0.9596 7 6 5.5927 2.9859 -1.9378 8 6 6.9647 2.6341 -2.4528 9 1 7.4527 1.7313 -2.1165 10 6 7.5968 3.4649 -3.3535 11 7 7.0027 4.5646 -3.7627 12 14 9.2970 3.0286 -3.9925 13 1 9.7423 1.7504 -3.3817 14 1 9.2482 2.8817 -5.4694 15 1 10.2524 4.1074 -3.6337 16 6 3.3979 1.3658 0.6637 17 1 -0.3634 -1.0277 -0.0005 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 0.5139 0.8900 20 1 1.3232 2.0763 0.3488 21 1 3.0572 0.7960 -1.8853 22 1 2.1959 2.3968 -1.9195 23 1 5.8207 1.8458 -0.1241 24 1 5.0834 0.9453 -1.4710 25 1 4.8953 3.0472 -2.7733 26 1 5.6326 3.9476 -1.4264 27 1 7.4473 5.1489 -4.3966 28 1 3.3991 1.8610 1.6346 29 1 3.9221 0.4101 0.6732 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307639401.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:06 Heat of formation + Delta-G solvation = -17.506142 kcal Electronic energy + Delta-G solvation = -11172.496216 eV Core-core repulsion = 9096.780743 eV Total energy + Delta-G solvation = -2075.715473 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.68414 -36.65826 -33.32427 -30.81441 -27.40846 -26.14793 -25.72102 -23.36367 -20.47545 -19.68436 -16.81872 -16.38244 -15.53956 -15.33707 -14.53048 -14.28502 -13.78368 -13.21989 -12.61122 -12.29922 -12.01127 -11.52846 -11.27709 -11.03028 -10.97030 -10.72538 -10.41415 -9.76632 -9.44008 -9.35657 -9.06862 -8.34418 -8.26505 -5.97175 -3.99859 3.32730 3.39822 3.44136 3.75966 4.38563 4.52315 4.69464 5.04866 5.29089 5.33822 5.38599 5.48261 5.62497 5.72009 5.85452 5.95497 6.04649 6.17219 6.40955 6.83983 7.08221 7.24570 7.44214 7.77497 7.90992 8.09714 8.45212 9.07789 9.63776 11.14247 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.098560 B = 0.007098 C = 0.007021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 284.021452 B = 3943.931172 C = 3987.180905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.054 3.946 4 C -0.009 4.009 5 N -0.476 5.476 6 C 0.032 3.968 7 C 0.032 3.968 8 C -0.522 4.522 9 H 0.054 0.946 10 C 0.057 3.943 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.002 3.998 17 H 0.082 0.918 18 H 0.041 0.959 19 H 0.040 0.960 20 H 0.093 0.907 21 H 0.076 0.924 22 H 0.086 0.914 23 H 0.060 0.940 24 H 0.032 0.968 25 H 0.015 0.985 26 H 0.024 0.976 27 H 0.260 0.740 28 H 0.088 0.912 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.577 -6.726 6.671 14.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C -0.005 4.005 4 C -0.138 4.138 5 N -0.200 5.200 6 C -0.096 4.096 7 C -0.006 4.006 8 C -0.561 4.561 9 H 0.073 0.927 10 C -0.144 4.144 11 N -0.532 5.532 12 Si 0.720 3.280 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.127 4.127 17 H 0.100 0.900 18 H 0.060 0.940 19 H 0.058 0.942 20 H 0.110 0.890 21 H 0.094 0.906 22 H 0.105 0.895 23 H 0.079 0.921 24 H 0.051 0.949 25 H 0.034 0.966 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.388 -6.044 6.652 13.737 hybrid contribution 0.855 -0.785 -0.629 1.320 sum -9.533 -6.829 6.023 13.183 Atomic orbital electron populations 1.22757 0.81527 1.02393 0.99902 1.87955 1.19470 1.28031 1.94589 1.24337 0.94288 0.84662 0.97186 1.24515 0.94391 0.98913 0.96000 1.68586 1.04016 1.43213 1.04195 1.22848 0.88258 0.99341 0.99134 1.18984 0.95206 0.93417 0.92944 1.21255 1.01897 1.07595 1.25351 0.92732 1.25007 0.97901 0.95028 0.96453 1.69993 1.37935 1.12663 1.32647 0.86534 0.84427 0.78399 0.78618 1.19767 1.21019 1.20981 1.24182 0.93687 0.97212 0.97659 0.89991 0.94011 0.94167 0.88951 0.90580 0.89514 0.92114 0.94940 0.96645 0.95788 0.93066 0.89383 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.86 101.05 1.10 1.41 15 2 O -0.38 -5.39 10.72 -35.23 -0.38 -5.76 15 3 C 0.05 0.77 4.48 -25.80 -0.12 0.65 15 4 C -0.01 -0.15 7.81 -2.63 -0.02 -0.18 15 5 N -0.48 -9.17 6.16 -238.31 -1.47 -10.64 15 6 C 0.03 0.70 4.74 -3.82 -0.02 0.69 15 7 C 0.03 0.87 5.28 -27.88 -0.15 0.72 15 8 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 15 9 H 0.05 1.54 7.74 -52.49 -0.41 1.13 15 10 C 0.06 1.68 5.46 -17.82 -0.10 1.59 15 11 N -0.89 -27.46 13.29 55.43 0.74 -26.73 15 12 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 15 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 15 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 15 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 15 16 C 0.00 0.02 7.78 -2.76 -0.02 0.00 15 17 H 0.08 0.68 8.14 -51.93 -0.42 0.26 15 18 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 15 19 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 15 20 H 0.09 1.17 7.89 -51.93 -0.41 0.76 15 21 H 0.08 1.34 7.49 -51.93 -0.39 0.95 15 22 H 0.09 1.42 8.14 -51.93 -0.42 1.00 15 23 H 0.06 1.32 8.08 -51.93 -0.42 0.90 15 24 H 0.03 0.71 7.39 -51.93 -0.38 0.33 15 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 15 26 H 0.02 0.70 8.14 -51.93 -0.42 0.27 15 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 28 H 0.09 1.23 8.14 -51.93 -0.42 0.81 15 29 H 0.07 1.15 7.93 -51.93 -0.41 0.74 15 LS Contribution 248.36 15.07 3.74 3.74 Total: -1.00 -31.50 248.36 -6.54 -38.03 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: -4.51 Total: -5.00 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 0.36 Total: -10.65 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.73 Total: -37.37 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.38 Total: -5.76 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.50 -6.54 -38.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307639401.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.528 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds