Wall clock time and date at job start Mon Mar 30 2020 02:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.53939 * 113.73166 * 248.77057 * 3 2 1 5 5 N 1.48197 * 86.09578 * 221.95447 * 4 3 2 6 6 C 1.46903 * 111.06728 * 137.51890 * 5 4 3 7 7 C 1.53007 * 109.46717 * 90.56483 * 6 5 4 8 8 C 1.50707 * 109.46606 * 179.97438 * 7 6 5 9 9 H 1.07995 * 120.00035 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99520 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00132 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99834 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46892 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47223 * 120.00087 * 12 10 8 15 15 H 1.48500 * 109.46802 * 239.99939 * 12 10 8 16 16 C 1.47957 * 90.79818 * 24.60113 * 5 4 3 17 17 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 18 18 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 19 19 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 20 20 H 1.08999 * 112.93495 * 20.33486 * 3 2 1 21 21 H 1.08997 * 113.75902 * 336.23639 * 4 3 2 22 22 H 1.08997 * 113.76010 * 107.60384 * 4 3 2 23 23 H 1.09000 * 109.47007 * 210.56407 * 6 5 4 24 24 H 1.09000 * 109.47171 * 330.56793 * 6 5 4 25 25 H 1.09000 * 109.47320 * 299.99733 * 7 6 5 26 26 H 1.09000 * 109.47046 * 60.00234 * 7 6 5 27 27 H 0.97005 * 119.99728 * 180.02562 * 11 10 8 28 28 H 1.08997 * 113.75810 * 221.08263 * 16 5 4 29 29 H 1.09004 * 113.86199 * 89.73076 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.7285 1.6638 -1.3136 5 7 3.7862 2.2502 -0.4571 6 6 5.1233 1.9071 -0.9596 7 6 5.5927 2.9859 -1.9378 8 6 6.9647 2.6341 -2.4528 9 1 7.4527 1.7313 -2.1165 10 6 7.5968 3.4649 -3.3535 11 7 7.0027 4.5646 -3.7627 12 14 9.2970 3.0286 -3.9925 13 1 9.7423 1.7504 -3.3817 14 1 9.2482 2.8817 -5.4694 15 1 10.2524 4.1074 -3.6337 16 6 3.3979 1.3658 0.6637 17 1 -0.3634 -1.0277 -0.0005 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 0.5139 0.8900 20 1 1.3232 2.0763 0.3488 21 1 3.0572 0.7960 -1.8853 22 1 2.1959 2.3968 -1.9195 23 1 5.8207 1.8458 -0.1241 24 1 5.0834 0.9453 -1.4710 25 1 4.8953 3.0472 -2.7733 26 1 5.6326 3.9476 -1.4264 27 1 7.4473 5.1489 -4.3966 28 1 3.3991 1.8610 1.6346 29 1 3.9221 0.4101 0.6732 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307639401.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:06 Heat of formation + Delta-G solvation = -41.258909 kcal Electronic energy + Delta-G solvation = -11173.526214 eV Core-core repulsion = 9096.780743 eV Total energy + Delta-G solvation = -2076.745470 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.99778 -37.81658 -35.45449 -32.74994 -28.90619 -27.38298 -27.04522 -25.19274 -22.30175 -21.00522 -18.60266 -17.88972 -16.91461 -16.63392 -16.42532 -15.63059 -15.09064 -14.66285 -14.23636 -14.05564 -13.56886 -13.22289 -12.87139 -12.66214 -12.33478 -12.22105 -12.13225 -11.59614 -11.40654 -11.10812 -10.58318 -10.51679 -9.80923 -8.21907 -6.34316 1.39260 1.40130 1.53652 2.38804 2.70526 3.10692 3.11321 3.47593 3.97439 4.20464 4.23793 4.42189 4.50506 4.59170 4.59584 4.68714 4.76402 4.88072 4.91348 5.04024 5.31286 5.43539 5.71097 5.76555 6.06114 6.24341 6.25448 6.82656 7.35177 8.90618 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.098560 B = 0.007098 C = 0.007021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 284.021452 B = 3943.931172 C = 3987.180905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.400 6.400 3 C 0.075 3.925 4 C -0.019 4.019 5 N -0.498 5.498 6 C 0.048 3.952 7 C 0.040 3.960 8 C -0.547 4.547 9 H 0.061 0.939 10 C -0.001 4.001 11 N -0.932 5.932 12 Si 0.970 3.030 13 H -0.261 1.261 14 H -0.277 1.277 15 H -0.276 1.276 16 C 0.002 3.998 17 H 0.098 0.902 18 H 0.047 0.953 19 H 0.057 0.943 20 H 0.115 0.885 21 H 0.066 0.934 22 H 0.086 0.914 23 H 0.064 0.936 24 H 0.032 0.968 25 H -0.013 1.013 26 H -0.008 1.008 27 H 0.264 0.736 28 H 0.109 0.891 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.666 -7.738 7.320 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.319 6.319 3 C 0.017 3.983 4 C -0.148 4.148 5 N -0.222 5.222 6 C -0.080 4.080 7 C 0.002 3.998 8 C -0.585 4.585 9 H 0.079 0.921 10 C -0.198 4.198 11 N -0.572 5.572 12 Si 0.794 3.206 13 H -0.185 1.185 14 H -0.202 1.202 15 H -0.202 1.202 16 C -0.126 4.126 17 H 0.117 0.883 18 H 0.065 0.935 19 H 0.076 0.924 20 H 0.133 0.867 21 H 0.084 0.916 22 H 0.105 0.895 23 H 0.082 0.918 24 H 0.051 0.949 25 H 0.006 0.994 26 H 0.011 0.989 27 H 0.073 0.927 28 H 0.127 0.873 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.499 -7.071 7.315 14.619 hybrid contribution 0.786 -0.469 -0.822 1.230 sum -9.713 -7.540 6.493 13.905 Atomic orbital electron populations 1.23021 0.79301 1.03972 1.01041 1.87926 1.21907 1.27536 1.94504 1.24085 0.94166 0.85611 0.94470 1.24594 0.94359 0.98505 0.97308 1.68490 1.02706 1.44877 1.06093 1.22496 0.90299 0.97214 0.97966 1.18813 0.94438 0.93670 0.92844 1.21670 1.02895 1.08047 1.25921 0.92106 1.26020 1.02592 0.94716 0.96516 1.70128 1.40039 1.13803 1.33239 0.85328 0.78590 0.78617 0.78060 1.18527 1.20219 1.20173 1.24264 0.94335 0.96662 0.97336 0.88318 0.93453 0.92420 0.86706 0.91615 0.89523 0.91778 0.94946 0.99447 0.98916 0.92673 0.87320 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.86 113.37 1.23 1.62 15 2 O -0.40 -10.36 10.72 -148.98 -1.60 -11.95 15 3 C 0.08 2.01 4.48 31.24 0.14 2.15 15 4 C -0.02 -0.63 7.81 86.37 0.67 0.05 15 5 N -0.50 -19.04 6.16 -911.09 -5.61 -24.65 15 6 C 0.05 2.17 4.74 86.30 0.41 2.58 15 7 C 0.04 2.24 5.28 29.85 0.16 2.40 15 8 C -0.55 -32.31 9.11 25.60 0.23 -32.08 15 9 H 0.06 3.43 7.74 -2.91 -0.02 3.41 15 10 C 0.00 -0.03 5.46 84.65 0.46 0.43 15 11 N -0.93 -58.29 13.29 21.45 0.28 -58.00 15 12 Si 0.97 45.12 29.54 68.60 2.03 47.15 15 13 H -0.26 -11.57 7.11 99.48 0.71 -10.86 15 14 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 15 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 16 C 0.00 0.07 7.78 86.41 0.67 0.75 15 17 H 0.10 1.36 8.14 -2.39 -0.02 1.35 15 18 H 0.05 0.76 8.14 -2.39 -0.02 0.75 15 19 H 0.06 0.80 8.14 -2.38 -0.02 0.78 15 20 H 0.12 2.57 7.89 -2.39 -0.02 2.55 15 21 H 0.07 2.33 7.49 -2.39 -0.02 2.32 15 22 H 0.09 2.86 8.14 -2.39 -0.02 2.84 15 23 H 0.06 2.78 8.08 -2.39 -0.02 2.76 15 24 H 0.03 1.43 7.39 -2.39 -0.02 1.41 15 25 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 15 26 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 15 27 H 0.26 15.38 8.31 -92.70 -0.77 14.61 15 28 H 0.11 2.76 8.14 -2.39 -0.02 2.74 15 29 H 0.07 2.18 7.93 -2.38 -0.02 2.16 15 Total: -1.00 -67.74 248.36 0.18 -67.55 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: 1.10 Total: 2.01 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 3.98 Total: -22.11 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -5.33 Total: -82.65 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -1.60 Total: -11.95 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -67.74 0.18 -67.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307639401.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.295 kcal (2) G-P(sol) polarization free energy of solvation -67.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds