Wall clock time and date at job start Mon Mar 30 2020 02:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 N 1.46501 * 112.84821 * 50.33422 * 4 3 2 6 6 C 1.36930 * 120.00160 * 309.66128 * 5 4 3 7 7 H 1.08008 * 120.00012 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00584 * 180.02562 * 6 5 4 9 9 N 1.31625 * 119.99830 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00585 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47307 * 89.99824 * 10 8 6 12 12 H 1.48499 * 109.47495 * 210.00091 * 10 8 6 13 13 H 1.48504 * 109.47079 * 329.99936 * 10 8 6 14 14 C 1.53781 * 113.61834 * 279.13483 * 4 3 2 15 15 C 1.53952 * 87.02208 * 220.05047 * 14 4 3 16 16 C 1.53780 * 113.61427 * 181.52575 * 4 3 2 17 17 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 18 18 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 19 19 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 21 21 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 22 22 H 0.97000 * 119.99816 * 129.66682 * 5 4 3 23 23 H 0.96995 * 120.00655 * 179.97438 * 9 8 6 24 24 H 1.08997 * 113.61038 * 334.56740 * 14 4 3 25 25 H 1.08996 * 113.61550 * 105.47106 * 14 4 3 26 26 H 1.09004 * 113.53571 * 270.80938 * 15 14 4 27 27 H 1.08997 * 113.66925 * 139.93031 * 15 14 4 28 28 H 1.08999 * 113.62131 * 254.53226 * 16 4 3 29 29 H 1.09003 * 113.61515 * 25.43798 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.0349 0.2805 -1.0382 6 6 3.5026 -0.9745 -1.1674 7 1 2.7142 -1.2976 -0.5037 8 6 3.9761 -1.8314 -2.1514 9 7 4.9373 -1.4379 -2.9600 10 14 3.2495 -3.5431 -2.3281 11 1 2.1011 -3.4988 -3.2686 12 1 4.2848 -4.4686 -2.8544 13 1 2.7848 -4.0230 -1.0018 14 6 4.1314 0.9133 1.3921 15 6 5.2585 1.8905 1.0115 16 6 4.2607 2.5402 0.0382 17 1 -0.3633 0.5139 0.8900 18 1 -0.3632 0.5138 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 1.6886 1.8464 -0.8900 21 1 1.6886 1.8464 0.8899 22 1 4.7427 0.5708 -1.6345 23 1 5.2685 -2.0367 -3.6474 24 1 3.5055 1.2665 2.2115 25 1 4.4703 -0.1135 1.5292 26 1 6.1022 1.4101 0.5159 27 1 5.5629 2.5464 1.8271 28 1 4.7040 2.8249 -0.9160 29 1 3.6703 3.3390 0.4869 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307673783.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:10 Heat of formation + Delta-G solvation = -8.211023 kcal Electronic energy + Delta-G solvation = -11919.191039 eV Core-core repulsion = 9843.878632 eV Total energy + Delta-G solvation = -2075.312406 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.81620 -36.40114 -33.06608 -29.91859 -27.77400 -25.57136 -24.87536 -23.50613 -21.55931 -18.12120 -17.10608 -15.72068 -15.21613 -14.69733 -14.43788 -13.98119 -13.51928 -12.85102 -12.29332 -12.10329 -11.77033 -11.04600 -10.86981 -10.79992 -10.69158 -10.25460 -10.01004 -9.82689 -9.45342 -9.26875 -8.77735 -8.62668 -6.83405 -5.59286 -2.85815 3.54467 3.59395 3.62411 4.48853 4.73005 5.32109 5.35090 5.49714 5.59793 5.72187 5.77409 5.85665 5.90753 6.05133 6.14865 6.20713 6.28416 6.32891 6.46181 6.49513 6.89764 7.04036 7.17446 7.94969 8.23029 8.61685 9.72227 10.24581 10.59897 11.64459 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.034867 B = 0.016727 C = 0.012562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.864533 B = 1673.521470 C = 2228.426645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.349 6.349 3 C 0.068 3.932 4 C 0.190 3.810 5 N -0.697 5.697 6 C -0.211 4.211 7 H 0.101 0.899 8 C -0.026 4.026 9 N -0.945 5.945 10 Si 0.905 3.095 11 H -0.294 1.294 12 H -0.296 1.296 13 H -0.282 1.282 14 C -0.159 4.159 15 C -0.132 4.132 16 C -0.144 4.144 17 H 0.026 0.974 18 H 0.032 0.968 19 H 0.076 0.924 20 H 0.038 0.962 21 H 0.032 0.968 22 H 0.384 0.616 23 H 0.251 0.749 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.819 6.573 6.946 10.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.267 6.267 3 C -0.011 4.011 4 C 0.096 3.904 5 N -0.336 5.336 6 C -0.342 4.342 7 H 0.118 0.882 8 C -0.220 4.220 9 N -0.595 5.595 10 Si 0.738 3.262 11 H -0.221 1.221 12 H -0.222 1.222 13 H -0.208 1.208 14 C -0.200 4.200 15 C -0.170 4.170 16 C -0.182 4.182 17 H 0.045 0.955 18 H 0.050 0.950 19 H 0.095 0.905 20 H 0.056 0.944 21 H 0.050 0.950 22 H 0.218 0.782 23 H 0.061 0.939 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.789 6.218 6.930 10.470 hybrid contribution -0.415 -0.608 -0.413 0.844 sum -5.204 5.610 6.516 10.050 Atomic orbital electron populations 1.22693 0.84423 1.01757 0.98516 1.88375 1.16760 1.26689 1.94870 1.22989 0.95409 0.84987 0.97678 1.20611 0.89166 0.90280 0.90298 1.42163 1.43542 1.12724 1.35180 1.19836 1.13237 0.89030 1.12079 0.88154 1.24764 0.99558 0.98607 0.99069 1.69670 1.31119 1.36148 1.22582 0.86180 0.77824 0.84748 0.77479 1.22140 1.22243 1.20816 1.23578 0.97749 0.99937 0.98723 1.22694 0.97388 0.98437 0.98442 1.23193 0.98431 0.96659 0.99914 0.95536 0.94958 0.90528 0.94353 0.95020 0.78185 0.93942 0.91872 0.91072 0.90166 0.92808 0.91434 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 11.01 101.05 1.11 1.49 15 2 O -0.35 -7.43 7.12 -35.23 -0.25 -7.68 15 3 C 0.07 1.32 5.49 37.16 0.20 1.52 15 4 C 0.19 3.92 1.26 -131.01 -0.17 3.76 15 5 N -0.70 -17.95 5.26 -46.48 -0.24 -18.19 15 6 C -0.21 -6.01 9.00 -15.06 -0.14 -6.14 15 7 H 0.10 2.86 5.22 -52.48 -0.27 2.59 15 8 C -0.03 -0.78 5.50 -17.43 -0.10 -0.87 15 9 N -0.94 -29.38 13.06 55.49 0.72 -28.65 15 10 Si 0.91 23.49 29.55 -169.99 -5.02 18.46 15 11 H -0.29 -7.59 7.11 56.52 0.40 -7.19 15 12 H -0.30 -7.72 7.11 56.52 0.40 -7.32 15 13 H -0.28 -7.15 7.11 56.52 0.40 -6.75 15 14 C -0.16 -3.01 7.44 -25.83 -0.19 -3.21 15 15 C -0.13 -2.24 8.00 -25.83 -0.21 -2.44 15 16 C -0.14 -2.44 7.34 -25.92 -0.19 -2.63 15 17 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 15 18 H 0.03 0.50 8.14 -51.93 -0.42 0.08 15 19 H 0.08 1.18 8.14 -51.93 -0.42 0.75 15 20 H 0.04 0.74 8.14 -51.93 -0.42 0.31 15 21 H 0.03 0.52 7.98 -51.93 -0.41 0.11 15 22 H 0.38 10.47 7.82 -40.82 -0.32 10.15 15 23 H 0.25 7.60 8.31 -40.82 -0.34 7.26 15 24 H 0.06 1.05 7.99 -51.93 -0.41 0.64 15 25 H 0.07 1.52 8.14 -51.93 -0.42 1.10 15 26 H 0.08 1.48 8.14 -51.93 -0.42 1.05 15 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 28 H 0.07 1.16 8.11 -51.93 -0.42 0.74 15 29 H 0.08 1.09 8.10 -51.93 -0.42 0.66 15 LS Contribution 241.87 15.07 3.64 3.64 Total: -1.00 -31.29 241.87 -5.18 -36.47 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -4.36 Total: 4.48 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 0.33 Total: -8.53 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.48 Total: -46.85 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.25 Total: -7.68 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.02 Total: 18.46 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -31.29 -5.18 -36.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307673783.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.261 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds