Wall clock time and date at job start Mon Mar 30 2020 01:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42896 * 109.47348 * 2 1 4 4 C 1.52997 * 109.47083 * 120.00375 * 2 1 3 5 5 N 1.46503 * 109.46714 * 304.99989 * 4 2 1 6 6 C 1.36945 * 119.99739 * 180.02562 * 5 4 2 7 7 H 1.08003 * 119.99875 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99882 * 179.97438 * 6 5 4 9 9 N 1.31617 * 119.99866 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99951 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47119 * 89.99922 * 10 8 6 12 12 H 1.48503 * 109.46707 * 209.99893 * 10 8 6 13 13 H 1.48496 * 109.47005 * 329.99728 * 10 8 6 14 14 C 1.53003 * 109.46852 * 240.00036 * 2 1 3 15 15 C 1.53001 * 117.51964 * 351.28651 * 14 2 1 16 16 C 1.52999 * 60.00190 * 107.47982 * 15 14 2 17 17 H 1.08997 * 109.47548 * 179.97438 * 1 2 3 18 18 H 1.08996 * 109.46727 * 300.00313 * 1 2 3 19 19 H 1.09002 * 109.47133 * 59.99771 * 1 2 3 20 20 H 0.96696 * 114.00050 * 179.97438 * 3 2 1 21 21 H 1.08998 * 109.47570 * 64.99445 * 4 2 1 22 22 H 1.08999 * 109.47120 * 184.99879 * 4 2 1 23 23 H 0.96996 * 120.00338 * 359.97438 * 5 4 2 24 24 H 0.96998 * 119.99868 * 180.02562 * 9 8 6 25 25 H 1.09002 * 115.54973 * 205.58434 * 14 2 1 26 26 H 1.09001 * 117.49733 * 214.97413 * 15 14 2 27 27 H 1.08995 * 117.49577 * 359.97438 * 15 14 2 28 28 H 1.09004 * 117.50150 * 252.51496 * 16 15 14 29 29 H 1.09004 * 117.51638 * 107.47550 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.4558 -0.1037 2.4423 6 6 1.7697 -0.5845 3.6856 7 1 2.4475 -1.4193 3.7864 8 6 1.2166 0.0010 4.8161 9 7 1.5178 -0.4615 6.0110 10 14 0.0436 1.4443 4.6415 11 1 -1.3482 0.9398 4.5257 12 1 0.1550 2.3198 5.8358 13 1 0.3916 2.2205 3.4244 14 6 2.0400 -0.7213 -1.2493 15 6 1.0111 -1.4561 -2.1109 16 6 1.6340 -0.1507 -2.6097 17 1 -0.3634 -1.0276 -0.0005 18 1 -0.3632 0.5139 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 2.9704 1.4235 0.0004 21 1 1.7516 -1.7715 1.2056 22 1 3.1263 -0.6444 1.2951 23 1 0.8473 0.6462 2.3517 24 1 1.1310 -0.0526 6.8009 25 1 3.0330 -1.1629 -1.1648 26 1 1.3271 -2.3811 -2.5931 27 1 -0.0294 -1.4261 -1.7875 28 1 1.0033 0.7384 -2.6146 29 1 2.3601 -0.2165 -3.4200 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307693509.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:10 Heat of formation + Delta-G solvation = -12.885146 kcal Electronic energy + Delta-G solvation = -11647.708582 eV Core-core repulsion = 9572.193490 eV Total energy + Delta-G solvation = -2075.515092 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.09129 -35.51369 -34.15528 -31.53639 -29.62335 -26.44783 -23.69208 -22.34746 -21.23351 -19.45225 -17.79814 -16.55516 -15.48928 -14.77765 -14.34482 -13.88464 -13.47950 -12.84766 -12.46171 -12.20592 -12.07421 -11.53809 -11.28125 -11.11510 -10.82787 -10.58332 -10.35916 -10.11729 -10.01111 -9.59856 -9.32260 -8.87185 -7.18377 -5.73671 -3.08253 3.41955 3.48817 3.49265 3.79152 4.60256 4.64053 4.71626 4.97943 5.07340 5.22971 5.46071 5.57763 5.63381 5.66856 5.79960 5.87960 6.09596 6.14153 6.20075 6.28460 6.51198 6.56104 6.71445 7.99848 8.07315 8.45692 9.26103 9.98510 10.19457 11.44828 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.067238 B = 0.010752 C = 0.010189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.332917 B = 2603.632441 C = 2747.461713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.149 3.851 3 O -0.554 6.554 4 C 0.138 3.862 5 N -0.749 5.749 6 C -0.244 4.244 7 H 0.089 0.911 8 C 0.005 3.995 9 N -0.935 5.935 10 Si 0.880 3.120 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.273 1.273 14 C -0.179 4.179 15 C -0.178 4.178 16 C -0.169 4.169 17 H 0.073 0.927 18 H 0.066 0.934 19 H 0.054 0.946 20 H 0.373 0.627 21 H 0.035 0.965 22 H 0.026 0.974 23 H 0.365 0.635 24 H 0.259 0.741 25 H 0.105 0.895 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.567 0.493 -15.914 15.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.109 3.891 3 O -0.359 6.359 4 C 0.010 3.990 5 N -0.396 5.396 6 C -0.374 4.374 7 H 0.107 0.893 8 C -0.191 4.191 9 N -0.584 5.584 10 Si 0.710 3.290 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.199 1.199 14 C -0.198 4.198 15 C -0.215 4.215 16 C -0.206 4.206 17 H 0.092 0.908 18 H 0.085 0.915 19 H 0.073 0.927 20 H 0.220 0.780 21 H 0.052 0.948 22 H 0.044 0.956 23 H 0.200 0.800 24 H 0.069 0.931 25 H 0.123 0.877 26 H 0.109 0.891 27 H 0.120 0.880 28 H 0.114 0.886 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.112 0.484 -15.726 15.772 hybrid contribution -0.102 0.795 0.063 0.804 sum -1.214 1.279 -15.662 15.761 Atomic orbital electron populations 1.21790 0.93124 1.02270 1.02204 1.20918 0.94589 0.81845 0.91787 1.86514 1.26451 1.26004 1.96963 1.21212 0.96102 0.95810 0.85851 1.42686 1.56045 1.38910 1.01976 1.19077 1.23367 1.13061 0.81911 0.89349 1.24644 1.00202 0.99171 0.95048 1.69704 1.48019 1.43716 0.96923 0.86591 0.81678 0.83586 0.77134 1.21051 1.21689 1.19883 1.23003 1.00048 1.04309 0.92479 1.23094 0.99059 0.95803 1.03560 1.22833 1.03738 0.97571 0.96498 0.90850 0.91530 0.92693 0.77967 0.94751 0.95614 0.80021 0.93091 0.87733 0.89071 0.87996 0.88600 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 7.21 37.16 0.27 -1.93 15 2 C 0.15 2.44 0.88 -90.62 -0.08 2.36 15 3 O -0.55 -9.35 12.83 -35.23 -0.45 -9.80 15 4 C 0.14 2.76 5.38 -4.04 -0.02 2.73 15 5 N -0.75 -18.57 5.04 -59.91 -0.30 -18.87 15 6 C -0.24 -7.14 10.47 -15.06 -0.16 -7.30 15 7 H 0.09 2.74 8.06 -52.48 -0.42 2.32 15 8 C 0.00 0.15 5.50 -17.43 -0.10 0.06 15 9 N -0.94 -30.01 13.97 55.49 0.78 -29.24 15 10 Si 0.88 22.88 27.74 -169.99 -4.71 18.16 15 11 H -0.28 -7.26 7.11 56.52 0.40 -6.86 15 12 H -0.29 -7.58 7.11 56.52 0.40 -7.18 15 13 H -0.27 -6.86 6.52 56.52 0.37 -6.49 15 14 C -0.18 -2.35 5.36 -90.61 -0.49 -2.84 15 15 C -0.18 -2.04 9.57 -26.73 -0.26 -2.30 15 16 C -0.17 -1.93 9.80 -26.73 -0.26 -2.19 15 17 H 0.07 1.09 6.97 -51.93 -0.36 0.73 15 18 H 0.07 1.22 6.57 -51.93 -0.34 0.88 15 19 H 0.05 0.78 7.07 -51.93 -0.37 0.41 15 20 H 0.37 5.14 9.04 45.56 0.41 5.55 15 21 H 0.03 0.69 8.14 -51.93 -0.42 0.27 15 22 H 0.03 0.51 8.14 -51.93 -0.42 0.09 15 23 H 0.37 9.05 4.05 -40.82 -0.17 8.88 15 24 H 0.26 7.90 8.31 -40.82 -0.34 7.56 15 25 H 0.10 1.30 8.11 -51.93 -0.42 0.88 15 26 H 0.09 0.92 8.14 -51.93 -0.42 0.49 15 27 H 0.10 1.17 5.85 -51.93 -0.30 0.86 15 28 H 0.10 1.15 7.60 -51.93 -0.39 0.76 15 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 15 LS Contribution 238.71 15.07 3.60 3.60 Total: -1.00 -32.54 238.71 -5.41 -37.95 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -3.23 Total: 9.61 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -1.09 Total: -11.41 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.47 Total: -48.11 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -0.45 Total: -9.80 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.71 Total: 18.16 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -32.54 -5.41 -37.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307693509.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.064 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds