Wall clock time and date at job start Mon Mar 30 2020 01:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42896 * 109.47348 * 2 1 4 4 C 1.52997 * 109.47083 * 120.00375 * 2 1 3 5 5 N 1.46503 * 109.46714 * 304.99989 * 4 2 1 6 6 C 1.36945 * 119.99739 * 180.02562 * 5 4 2 7 7 H 1.08003 * 119.99875 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99882 * 179.97438 * 6 5 4 9 9 N 1.31617 * 119.99866 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99951 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47119 * 89.99922 * 10 8 6 12 12 H 1.48503 * 109.46707 * 209.99893 * 10 8 6 13 13 H 1.48496 * 109.47005 * 329.99728 * 10 8 6 14 14 C 1.53003 * 109.46852 * 240.00036 * 2 1 3 15 15 C 1.53001 * 117.51964 * 351.28651 * 14 2 1 16 16 C 1.52999 * 60.00190 * 107.47982 * 15 14 2 17 17 H 1.08997 * 109.47548 * 179.97438 * 1 2 3 18 18 H 1.08996 * 109.46727 * 300.00313 * 1 2 3 19 19 H 1.09002 * 109.47133 * 59.99771 * 1 2 3 20 20 H 0.96696 * 114.00050 * 179.97438 * 3 2 1 21 21 H 1.08998 * 109.47570 * 64.99445 * 4 2 1 22 22 H 1.08999 * 109.47120 * 184.99879 * 4 2 1 23 23 H 0.96996 * 120.00338 * 359.97438 * 5 4 2 24 24 H 0.96998 * 119.99868 * 180.02562 * 9 8 6 25 25 H 1.09002 * 115.54973 * 205.58434 * 14 2 1 26 26 H 1.09001 * 117.49733 * 214.97413 * 15 14 2 27 27 H 1.08995 * 117.49577 * 359.97438 * 15 14 2 28 28 H 1.09004 * 117.50150 * 252.51496 * 16 15 14 29 29 H 1.09004 * 117.51638 * 107.47550 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.4558 -0.1037 2.4423 6 6 1.7697 -0.5845 3.6856 7 1 2.4475 -1.4193 3.7864 8 6 1.2166 0.0010 4.8161 9 7 1.5178 -0.4615 6.0110 10 14 0.0436 1.4443 4.6415 11 1 -1.3482 0.9398 4.5257 12 1 0.1550 2.3198 5.8358 13 1 0.3916 2.2205 3.4244 14 6 2.0400 -0.7213 -1.2493 15 6 1.0111 -1.4561 -2.1109 16 6 1.6340 -0.1507 -2.6097 17 1 -0.3634 -1.0276 -0.0005 18 1 -0.3632 0.5139 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 2.9704 1.4235 0.0004 21 1 1.7516 -1.7715 1.2056 22 1 3.1263 -0.6444 1.2951 23 1 0.8473 0.6462 2.3517 24 1 1.1310 -0.0526 6.8009 25 1 3.0330 -1.1629 -1.1648 26 1 1.3271 -2.3811 -2.5931 27 1 -0.0294 -1.4261 -1.7875 28 1 1.0033 0.7384 -2.6146 29 1 2.3601 -0.2165 -3.4200 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307693509.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:10 Heat of formation + Delta-G solvation = -37.360087 kcal Electronic energy + Delta-G solvation = -11648.769895 eV Core-core repulsion = 9572.193490 eV Total energy + Delta-G solvation = -2076.576405 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.29617 -36.83994 -35.89229 -33.57196 -31.19584 -28.02569 -25.40920 -23.33000 -22.79696 -20.74265 -19.84313 -17.72711 -16.88731 -16.57712 -15.94185 -15.28303 -15.17035 -14.62254 -13.87441 -13.72544 -13.43123 -13.21616 -12.92800 -12.75210 -12.22644 -12.08418 -11.85144 -11.63838 -11.36321 -11.05802 -11.03184 -10.65662 -9.31968 -8.05958 -5.38334 1.35686 1.37771 1.46267 2.45574 2.82539 3.25068 3.39491 3.59106 3.85293 3.97950 4.04268 4.18838 4.29813 4.51373 4.79851 4.83281 4.93045 4.95842 4.98164 5.14419 5.22058 5.32775 5.38953 5.71620 6.18489 6.87486 7.05732 7.82269 8.01778 9.15735 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.067238 B = 0.010752 C = 0.010189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.332917 B = 2603.632441 C = 2747.461713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.157 3.843 3 O -0.568 6.568 4 C 0.132 3.868 5 N -0.752 5.752 6 C -0.237 4.237 7 H 0.057 0.943 8 C -0.060 4.060 9 N -0.982 5.982 10 Si 0.950 3.050 11 H -0.275 1.275 12 H -0.291 1.291 13 H -0.259 1.259 14 C -0.193 4.193 15 C -0.173 4.173 16 C -0.156 4.156 17 H 0.082 0.918 18 H 0.040 0.960 19 H 0.074 0.926 20 H 0.385 0.615 21 H 0.034 0.966 22 H 0.027 0.973 23 H 0.367 0.633 24 H 0.259 0.741 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 1.156 -18.141 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.117 3.883 3 O -0.375 6.375 4 C 0.005 3.995 5 N -0.399 5.399 6 C -0.368 4.368 7 H 0.075 0.925 8 C -0.251 4.251 9 N -0.633 5.633 10 Si 0.777 3.223 11 H -0.201 1.201 12 H -0.218 1.218 13 H -0.184 1.184 14 C -0.212 4.212 15 C -0.210 4.210 16 C -0.193 4.193 17 H 0.101 0.899 18 H 0.059 0.941 19 H 0.093 0.907 20 H 0.234 0.766 21 H 0.052 0.948 22 H 0.045 0.955 23 H 0.202 0.798 24 H 0.068 0.932 25 H 0.129 0.871 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.109 0.891 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.739 1.143 -18.007 18.127 hybrid contribution 0.173 0.510 0.716 0.896 sum -1.566 1.653 -17.291 17.440 Atomic orbital electron populations 1.21831 0.92986 1.02852 1.01887 1.20784 0.94679 0.81573 0.91312 1.86482 1.27746 1.26315 1.96952 1.21457 0.95990 0.96010 0.86023 1.42695 1.56280 1.39044 1.01852 1.19087 1.21918 1.11815 0.83978 0.92460 1.25442 1.02580 1.02485 0.94640 1.69872 1.49910 1.45672 0.97838 0.85477 0.79487 0.79948 0.77361 1.20065 1.21794 1.18399 1.22829 1.00895 1.05692 0.91811 1.23214 0.98598 0.96668 1.02479 1.22890 1.03593 0.97304 0.95490 0.89905 0.94087 0.90667 0.76605 0.94839 0.95526 0.79824 0.93222 0.87117 0.87386 0.87994 0.89064 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 7.21 71.98 0.52 -3.64 15 2 C 0.16 4.82 0.88 -10.79 -0.01 4.81 15 3 O -0.57 -17.99 12.83 -148.98 -1.91 -19.91 15 4 C 0.13 5.15 5.38 86.38 0.46 5.62 15 5 N -0.75 -36.86 5.04 -343.45 -1.73 -38.59 15 6 C -0.24 -14.03 10.47 84.03 0.88 -13.15 15 7 H 0.06 3.67 8.06 -2.91 -0.02 3.65 15 8 C -0.06 -3.64 5.50 84.86 0.47 -3.17 15 9 N -0.98 -64.25 13.97 21.65 0.30 -63.95 15 10 Si 0.95 47.36 27.74 68.60 1.90 49.26 15 11 H -0.27 -13.21 7.11 99.48 0.71 -12.50 15 12 H -0.29 -14.49 7.11 99.48 0.71 -13.78 15 13 H -0.26 -12.17 6.52 99.48 0.65 -11.53 15 14 C -0.19 -4.54 5.36 -10.79 -0.06 -4.59 15 15 C -0.17 -3.37 9.57 30.59 0.29 -3.08 15 16 C -0.16 -3.00 9.80 30.60 0.30 -2.70 15 17 H 0.08 2.28 6.97 -2.39 -0.02 2.27 15 18 H 0.04 1.43 6.57 -2.39 -0.02 1.42 15 19 H 0.07 1.93 7.07 -2.39 -0.02 1.91 15 20 H 0.39 9.88 9.04 -74.06 -0.67 9.21 15 21 H 0.03 1.33 8.14 -2.39 -0.02 1.31 15 22 H 0.03 1.04 8.14 -2.39 -0.02 1.02 15 23 H 0.37 17.71 4.05 -92.71 -0.38 17.34 15 24 H 0.26 16.07 8.31 -92.71 -0.77 15.30 15 25 H 0.11 2.46 8.11 -2.39 -0.02 2.44 15 26 H 0.11 1.76 8.14 -2.39 -0.02 1.74 15 27 H 0.10 2.00 5.85 -2.39 -0.01 1.99 15 28 H 0.09 1.87 7.60 -2.39 -0.02 1.86 15 29 H 0.11 1.70 8.14 -2.38 -0.02 1.68 15 Total: -1.00 -69.24 238.71 1.46 -67.78 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.04 Total: 25.31 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 2.86 Total: -19.90 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -1.43 Total: -102.54 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -1.91 Total: -19.91 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 1.90 Total: 49.26 kcal Total: -69.24 1.46 -67.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307693509.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.416 kcal (2) G-P(sol) polarization free energy of solvation -69.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds