Wall clock time and date at job start Mon Mar 30 2020 02:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36939 * 119.99936 * 2 1 4 4 H 1.07998 * 120.00078 * 200.70421 * 3 2 1 5 5 C 1.38813 * 119.99810 * 20.70504 * 3 2 1 6 6 N 1.31619 * 119.99886 * 14.10923 * 5 3 2 7 7 Si 1.86809 * 119.99891 * 194.10589 * 5 3 2 8 8 H 1.48502 * 109.46881 * 60.00105 * 7 5 3 9 9 H 1.48501 * 109.46876 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46847 * 300.00384 * 7 5 3 11 11 C 1.46498 * 120.00016 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47028 * 265.93901 * 11 2 1 13 13 C 1.53004 * 115.55031 * 64.88845 * 12 11 2 14 14 O 1.42901 * 109.47024 * 39.47573 * 13 12 11 15 15 C 1.53003 * 117.51862 * 210.58808 * 12 11 2 16 16 C 1.53005 * 60.00095 * 107.48025 * 15 12 11 17 17 H 1.08998 * 109.46605 * 274.13549 * 1 2 3 18 18 H 1.09000 * 109.47128 * 34.13325 * 1 2 3 19 19 H 1.08996 * 109.47017 * 154.13539 * 1 2 3 20 20 H 0.97003 * 119.99408 * 179.97438 * 6 5 3 21 21 H 1.09000 * 109.47312 * 145.93850 * 11 2 1 22 22 H 1.08997 * 109.47168 * 25.93997 * 11 2 1 23 23 H 1.09004 * 109.46831 * 279.47563 * 13 12 11 24 24 H 1.08996 * 109.46855 * 159.48386 * 13 12 11 25 25 H 0.96698 * 113.99678 * 179.97438 * 14 13 12 26 26 H 1.08994 * 117.49911 * 214.96836 * 15 12 11 27 27 H 1.08997 * 117.49607 * 359.97438 * 15 12 11 28 28 H 1.09001 * 117.50162 * 252.51172 * 16 15 12 29 29 H 1.09004 * 117.49696 * 107.48489 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1774 1.2162 -0.3307 5 6 1.5229 2.3492 0.4250 6 7 0.3843 2.2810 1.0819 7 14 2.2953 4.0116 0.0648 8 1 2.4243 4.1896 -1.4038 9 1 1.4359 5.0875 0.6208 10 1 3.6398 4.0789 0.6917 11 6 2.1976 -1.2687 -0.0006 12 6 2.5410 -1.6599 1.4381 13 6 1.3452 -1.9669 2.3419 14 8 0.3614 -2.6912 1.6005 15 6 3.8230 -2.4636 1.6653 16 6 3.7588 -0.9923 2.0802 17 1 -0.3632 0.0741 1.0250 18 1 -0.3633 0.8506 -0.5766 19 1 -0.3633 -0.9247 -0.4483 20 1 -0.0535 3.0939 1.3792 21 1 3.1165 -1.1575 -0.5761 22 1 1.5789 -2.0452 -0.4504 23 1 0.9136 -1.0334 2.7031 24 1 1.6754 -2.5666 3.1901 25 1 -0.4265 -2.9205 2.1121 26 1 3.8144 -3.2110 2.4586 27 1 4.4217 -2.7142 0.7896 28 1 4.3155 -0.2747 1.4775 29 1 3.7080 -0.7719 3.1465 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307727828.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:18 Heat of formation + Delta-G solvation = -23.314689 kcal Electronic energy + Delta-G solvation = -11958.089770 eV Core-core repulsion = 9882.122420 eV Total energy + Delta-G solvation = -2075.967351 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.59812 -36.87083 -36.31297 -32.98198 -28.36920 -27.97262 -27.11573 -23.43393 -22.97076 -19.87977 -18.66406 -18.13403 -16.84323 -16.29009 -15.89645 -15.11674 -15.00782 -14.57086 -14.06397 -13.52374 -13.15694 -12.78296 -12.60411 -12.30448 -12.22668 -12.07274 -11.99664 -11.68401 -11.15719 -10.89781 -10.55707 -10.33574 -8.71887 -7.76300 -5.20102 1.46522 1.49055 1.55201 2.54122 2.96363 3.37581 3.48951 3.87042 4.01170 4.19075 4.32983 4.42731 4.59815 4.84361 4.90757 4.95555 5.08807 5.16198 5.24374 5.36229 5.36511 5.41880 5.67631 5.78961 6.38050 7.01464 7.22073 7.95721 8.41472 9.27563 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.046477 B = 0.014504 C = 0.012568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.297685 B = 1930.064160 C = 2227.375970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.194 3.806 2 N -0.609 5.609 3 C -0.248 4.248 4 H 0.067 0.933 5 C -0.055 4.055 6 N -0.939 5.939 7 Si 0.963 3.037 8 H -0.282 1.282 9 H -0.296 1.296 10 H -0.277 1.277 11 C 0.192 3.808 12 C -0.155 4.155 13 C 0.135 3.865 14 O -0.576 6.576 15 C -0.153 4.153 16 C -0.163 4.163 17 H 0.002 0.998 18 H 0.009 0.991 19 H 0.020 0.980 20 H 0.244 0.756 21 H 0.038 0.962 22 H 0.053 0.947 23 H 0.017 0.983 24 H 0.057 0.943 25 H 0.388 0.612 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.348 -8.484 2.357 9.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.331 5.331 3 C -0.378 4.378 4 H 0.084 0.916 5 C -0.250 4.250 6 N -0.586 5.586 7 Si 0.792 3.208 8 H -0.208 1.208 9 H -0.222 1.222 10 H -0.202 1.202 11 C 0.066 3.934 12 C -0.157 4.157 13 C 0.057 3.943 14 O -0.383 6.383 15 C -0.191 4.191 16 C -0.200 4.200 17 H 0.020 0.980 18 H 0.028 0.972 19 H 0.038 0.962 20 H 0.054 0.946 21 H 0.056 0.944 22 H 0.071 0.929 23 H 0.035 0.965 24 H 0.075 0.925 25 H 0.236 0.764 26 H 0.126 0.874 27 H 0.118 0.882 28 H 0.097 0.903 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.678 -8.287 1.916 9.267 hybrid contribution -0.320 1.245 0.528 1.390 sum 3.358 -7.042 2.444 8.176 Atomic orbital electron populations 1.20370 0.82754 0.94833 0.97144 1.44111 1.02027 1.01387 1.85568 1.19408 0.97002 0.86187 1.35227 0.91571 1.25652 0.98674 1.01300 0.99362 1.70247 1.19894 1.26806 1.41670 0.85404 0.77609 0.80059 0.77764 1.20800 1.22212 1.20249 1.20296 0.94789 0.86658 0.91652 1.22217 0.89321 1.04749 0.99459 1.21284 0.87866 0.93214 0.91888 1.86433 1.32158 1.76793 1.42885 1.23125 0.99122 0.93398 1.03414 1.22711 1.01182 0.95878 1.00261 0.97951 0.97233 0.96156 0.94630 0.94381 0.92904 0.96477 0.92524 0.76373 0.87402 0.88200 0.90273 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.17 8.39 127.77 1.07 11.24 15 2 N -0.61 -31.79 2.85 -726.94 -2.07 -33.86 15 3 C -0.25 -13.91 9.68 84.03 0.81 -13.09 15 4 H 0.07 3.62 7.87 -2.91 -0.02 3.60 15 5 C -0.06 -3.17 5.08 84.86 0.43 -2.74 15 6 N -0.94 -56.60 10.64 21.65 0.23 -56.37 15 7 Si 0.96 46.11 29.58 68.60 2.03 48.14 15 8 H -0.28 -13.18 7.11 99.48 0.71 -12.47 15 9 H -0.30 -14.25 7.11 99.48 0.71 -13.55 15 10 H -0.28 -12.75 7.11 99.48 0.71 -12.05 15 11 C 0.19 8.39 5.22 86.38 0.45 8.84 15 12 C -0.15 -5.91 2.17 -52.18 -0.11 -6.02 15 13 C 0.14 4.89 6.75 71.98 0.49 5.38 15 14 O -0.58 -19.60 12.35 -148.98 -1.84 -21.44 15 15 C -0.15 -4.55 9.87 30.60 0.30 -4.25 15 16 C -0.16 -5.90 9.97 30.60 0.31 -5.59 15 17 H 0.00 0.13 7.38 -2.39 -0.02 0.11 15 18 H 0.01 0.51 7.15 -2.39 -0.02 0.50 15 19 H 0.02 0.95 7.81 -2.39 -0.02 0.93 15 20 H 0.24 14.42 8.31 -92.71 -0.77 13.65 15 21 H 0.04 1.62 8.02 -2.39 -0.02 1.60 15 22 H 0.05 2.26 7.25 -2.39 -0.02 2.24 15 23 H 0.02 0.74 8.07 -2.38 -0.02 0.72 15 24 H 0.06 1.69 7.94 -2.39 -0.02 1.67 15 25 H 0.39 9.41 9.12 -74.06 -0.68 8.74 15 26 H 0.11 2.68 8.08 -2.39 -0.02 2.66 15 27 H 0.10 2.73 8.14 -2.39 -0.02 2.71 15 28 H 0.08 3.11 8.14 -2.39 -0.02 3.09 15 29 H 0.09 3.01 8.14 -2.39 -0.02 2.99 15 Total: -1.00 -65.20 245.30 2.54 -62.66 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 0.45 Total: 7.13 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 3.75 Total: -6.25 kcal Atomic # 7 Polarization: -88.39 SS G_CDS: -1.84 Total: -90.23 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -1.84 Total: -21.44 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -65.20 2.54 -62.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307727828.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.345 kcal (2) G-P(sol) polarization free energy of solvation -65.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds