Wall clock time and date at job start Mon Mar 30 2020 02:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 111.00255 * 2 1 4 4 C 1.50703 * 109.47107 * 293.95458 * 3 2 1 5 5 H 1.07996 * 119.99751 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00001 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99923 * 180.02562 * 6 4 3 8 8 Si 1.86804 * 120.00006 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.47093 * 90.00088 * 8 6 4 10 10 H 1.48495 * 109.46891 * 210.00496 * 8 6 4 11 11 H 1.48504 * 109.47189 * 330.00185 * 8 6 4 12 12 C 1.46901 * 111.00040 * 123.95736 * 2 1 3 13 13 H 1.09004 * 115.55079 * 211.72000 * 12 2 1 14 14 C 1.53000 * 117.49606 * 357.42049 * 12 2 1 15 15 C 1.53002 * 60.00061 * 107.49346 * 14 12 2 16 16 H 1.09003 * 117.49557 * 252.51162 * 15 14 12 17 17 C 1.52995 * 117.51823 * 107.47980 * 15 14 12 18 18 O 1.42902 * 109.46873 * 116.37209 * 17 15 14 19 19 H 1.09005 * 109.46528 * 59.99744 * 1 2 3 20 20 H 1.09000 * 109.46785 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47044 * 300.00388 * 1 2 3 22 22 H 1.09002 * 109.47043 * 53.95437 * 3 2 1 23 23 H 1.09001 * 109.47354 * 173.95499 * 3 2 1 24 24 H 0.97000 * 119.99684 * 180.02562 * 7 6 4 25 25 H 1.09000 * 117.49610 * 214.98400 * 14 12 2 26 26 H 1.09000 * 117.50170 * 0.02562 * 14 12 2 27 27 H 1.09000 * 109.47307 * 236.37241 * 17 15 14 28 28 H 1.09007 * 109.47314 * 356.37309 * 17 15 14 29 29 H 0.96703 * 113.99549 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0747 1.5112 -2.0488 6 6 2.0278 3.3491 -1.5289 7 7 1.7145 3.9389 -2.6618 8 14 3.0011 4.2758 -0.2314 9 1 4.4534 4.0622 -0.4556 10 1 2.6937 5.7256 -0.3237 11 1 2.6297 3.7760 1.1168 12 6 1.9955 -0.7661 1.1375 13 1 2.9449 -0.4149 1.5418 14 6 0.9829 -1.3551 2.1217 15 6 1.7342 -2.2735 1.1557 16 1 1.1717 -2.6968 0.3235 17 6 2.8256 -3.1726 1.7397 18 8 2.4575 -4.5425 1.5665 19 1 -0.3632 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.5612 1.9273 0.8309 23 1 3.0798 1.3444 0.1082 24 1 1.9898 4.8548 -2.8241 25 1 1.2660 -1.3915 3.1736 26 1 -0.0739 -1.1747 1.9249 27 1 3.7675 -2.9817 1.2254 28 1 2.9421 -2.9593 2.8023 29 1 3.1053 -5.1708 1.9140 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307730863.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:07 Heat of formation + Delta-G solvation = -16.708375 kcal Electronic energy + Delta-G solvation = -11284.923508 eV Core-core repulsion = 9209.242629 eV Total energy + Delta-G solvation = -2075.680879 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.67451 -36.47544 -33.94455 -32.07265 -27.96055 -26.39087 -25.41304 -21.73102 -20.39713 -19.45885 -17.43808 -16.76550 -15.76663 -14.82676 -14.50085 -14.10219 -13.63331 -13.27263 -12.64005 -12.29429 -11.81341 -11.47328 -11.08482 -10.88583 -10.74194 -10.54998 -10.37643 -10.27858 -9.93200 -9.47652 -9.20582 -8.58218 -7.28146 -6.06298 -4.04072 3.27491 3.34850 3.36585 3.90400 4.27194 4.40742 4.86963 5.06901 5.18873 5.26250 5.39011 5.51571 5.59834 5.78855 5.91352 6.03882 6.20138 6.31642 6.49305 6.66094 6.83699 6.96538 7.55669 7.62070 7.88278 8.00285 8.63625 9.01938 9.54830 11.06777 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.065210 B = 0.008854 C = 0.008496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.281957 B = 3161.699086 C = 3294.878878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.501 5.501 3 C 0.163 3.837 4 C -0.511 4.511 5 H 0.081 0.919 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.875 3.125 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.041 3.959 13 H 0.109 0.891 14 C -0.216 4.216 15 C -0.152 4.152 16 H 0.111 0.889 17 C 0.110 3.890 18 O -0.573 6.573 19 H 0.080 0.920 20 H 0.050 0.950 21 H 0.019 0.981 22 H -0.008 1.008 23 H 0.025 0.975 24 H 0.264 0.736 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.051 0.949 28 H 0.043 0.957 29 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -10.327 10.322 14.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.222 5.222 3 C 0.037 3.963 4 C -0.550 4.550 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.069 4.069 13 H 0.127 0.873 14 C -0.255 4.255 15 C -0.171 4.171 16 H 0.130 0.870 17 C 0.033 3.967 18 O -0.378 6.378 19 H 0.099 0.901 20 H 0.068 0.932 21 H 0.038 0.962 22 H 0.009 0.991 23 H 0.043 0.957 24 H 0.074 0.926 25 H 0.105 0.895 26 H 0.119 0.881 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 1.479 -10.059 9.479 13.900 hybrid contribution 0.782 0.753 1.615 1.946 sum 2.260 -9.306 11.094 14.655 Atomic orbital electron populations 1.22339 0.87946 0.99676 1.01387 1.61709 1.07511 1.16337 1.36618 1.20237 0.94934 0.83666 0.97452 1.21032 1.35807 0.97288 1.00834 0.90093 1.24891 0.95776 0.97306 0.95310 1.69893 1.46794 1.13312 1.23862 0.86859 0.80891 0.79300 0.82705 1.20097 1.21162 1.19258 1.22795 0.98587 0.92548 0.93000 0.87317 1.23733 0.99521 1.06101 0.96129 1.22309 1.01082 0.91976 1.01732 0.87047 1.21670 0.96201 0.80847 0.98012 1.86501 1.50238 1.16316 1.84725 0.90100 0.93174 0.96236 0.99063 0.95706 0.92622 0.89451 0.88131 0.93129 0.93869 0.77849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 7.99 60.07 0.48 1.16 15 2 N -0.50 -10.83 4.95 -236.32 -1.17 -12.00 15 3 C 0.16 4.01 3.74 -4.98 -0.02 3.99 15 4 C -0.51 -14.67 9.07 -34.44 -0.31 -14.98 15 5 H 0.08 2.53 7.35 -52.49 -0.39 2.14 15 6 C 0.07 2.00 5.47 -17.82 -0.10 1.90 15 7 N -0.90 -27.64 13.96 55.43 0.77 -26.87 15 8 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 15 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 11 H -0.27 -6.33 6.54 56.52 0.37 -5.96 15 12 C 0.04 0.73 5.83 -67.71 -0.39 0.34 15 13 H 0.11 1.82 7.89 -51.93 -0.41 1.41 15 14 C -0.22 -3.25 9.10 -26.73 -0.24 -3.49 15 15 C -0.15 -2.36 5.57 -90.62 -0.51 -2.87 15 16 H 0.11 1.92 7.88 -51.93 -0.41 1.51 15 17 C 0.11 1.40 7.33 37.15 0.27 1.67 15 18 O -0.57 -7.17 13.66 -35.23 -0.48 -7.66 15 19 H 0.08 1.75 6.86 -51.93 -0.36 1.39 15 20 H 0.05 0.87 6.70 -51.93 -0.35 0.52 15 21 H 0.02 0.37 7.49 -51.93 -0.39 -0.02 15 22 H -0.01 -0.21 7.18 -51.93 -0.37 -0.58 15 23 H 0.02 0.60 7.39 -51.93 -0.38 0.22 15 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 15 25 H 0.09 1.15 8.03 -51.93 -0.42 0.73 15 26 H 0.10 1.53 5.86 -51.93 -0.30 1.22 15 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 15 28 H 0.04 0.48 7.88 -51.93 -0.41 0.07 15 29 H 0.38 2.68 9.12 45.56 0.42 3.10 15 LS Contribution 240.95 15.07 3.63 3.63 Total: -1.00 -31.86 240.95 -6.09 -37.95 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -3.36 Total: 0.43 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -0.82 Total: -12.28 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: -0.40 Total: -38.87 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.48 Total: -7.66 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.86 -6.09 -37.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307730863.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.246 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds