Wall clock time and date at job start Mon Mar 30 2020 02:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47591 * 2 1 4 4 C 1.50703 * 109.47480 * 239.99974 * 2 1 3 5 5 H 1.07997 * 119.99852 * 275.01185 * 4 2 1 6 6 C 1.37871 * 120.00042 * 95.00263 * 4 2 1 7 7 N 1.31521 * 119.99982 * 184.92285 * 6 4 2 8 8 Si 1.86794 * 120.00071 * 4.92367 * 6 4 2 9 9 H 1.48503 * 109.47496 * 84.83399 * 8 6 4 10 10 H 1.48502 * 109.47075 * 204.83216 * 8 6 4 11 11 H 1.48504 * 109.46993 * 324.83017 * 8 6 4 12 12 N 1.46902 * 109.47216 * 119.99993 * 2 1 3 13 13 O 1.46301 * 110.99985 * 59.99709 * 12 2 1 14 14 C 1.42895 * 114.00245 * 180.02562 * 13 12 2 15 15 C 1.52999 * 109.47273 * 179.97438 * 14 13 12 16 16 C 1.53002 * 117.49973 * 243.74674 * 15 14 13 17 17 C 1.53008 * 117.49714 * 175.08689 * 15 14 13 18 18 H 1.09001 * 109.47245 * 294.98103 * 1 2 3 19 19 H 1.09006 * 109.47044 * 54.97691 * 1 2 3 20 20 H 1.08996 * 109.47541 * 174.97401 * 1 2 3 21 21 H 0.96998 * 119.99833 * 180.02562 * 7 6 4 22 22 H 1.00902 * 111.00072 * 183.95029 * 12 2 1 23 23 H 1.09002 * 109.46905 * 59.99909 * 14 13 12 24 24 H 1.08995 * 109.47624 * 300.00513 * 14 13 12 25 25 H 1.09000 * 115.54665 * 29.42091 * 15 14 13 26 26 H 1.09002 * 117.49730 * 0.02562 * 16 15 14 27 27 H 1.08999 * 117.49481 * 145.02521 * 16 15 14 28 28 H 1.09001 * 117.49802 * 214.97969 * 17 15 14 29 29 H 1.09003 * 117.49798 * 0.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1353 -1.7855 -1.2290 6 6 2.3603 0.0121 -2.3580 7 7 2.7060 -0.6132 -3.4622 8 14 2.3139 1.8790 -2.3173 9 1 3.5995 2.3947 -1.7821 10 1 2.1061 2.3990 -3.6927 11 1 1.1989 2.3275 -1.4449 12 7 2.0196 -0.6925 1.1994 13 8 1.5505 -2.0778 1.2333 14 6 1.9904 -2.8127 2.3771 15 6 1.4428 -4.2397 2.3081 16 6 0.4682 -4.6762 3.4038 17 6 1.8976 -5.2239 3.3878 18 1 -0.3634 0.4340 0.9315 19 1 -0.3633 0.5898 -0.8416 20 1 -0.3634 -1.0236 -0.0900 21 1 2.9371 -0.1049 -4.2553 22 1 3.0262 -0.6501 1.2559 23 1 1.6262 -2.3276 3.2827 24 1 3.0798 -2.8416 2.3935 25 1 1.2809 -4.6330 1.3045 26 1 0.2168 -3.9466 4.1736 27 1 -0.3347 -5.3570 3.1211 28 1 2.0343 -6.2648 3.0946 29 1 2.5865 -4.8546 4.1475 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307892926.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:45 Heat of formation + Delta-G solvation = 17.359906 kcal Electronic energy + Delta-G solvation = -11289.139475 eV Core-core repulsion = 9214.935907 eV Total energy + Delta-G solvation = -2074.203568 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.58145 -35.86323 -33.72736 -31.57614 -27.73388 -25.77507 -24.98508 -22.29559 -20.41820 -19.74922 -17.18743 -16.36455 -15.24913 -14.98247 -14.41705 -13.93842 -13.35102 -12.55470 -12.48961 -12.20211 -11.49750 -11.31822 -10.95864 -10.90496 -10.77910 -10.49416 -10.31103 -10.15132 -9.82014 -9.44415 -9.12193 -8.61178 -7.57719 -6.12290 -4.13220 3.22395 3.32124 3.33628 3.59031 3.99504 4.35783 4.96664 5.04578 5.10232 5.25318 5.63225 5.67045 5.93347 5.96371 5.98667 6.06600 6.18108 6.38483 6.50448 6.72649 6.79315 7.04373 7.38667 7.43791 7.87763 8.21254 8.48900 8.98527 9.50027 11.01172 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.068093 B = 0.009048 C = 0.008583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.102702 B = 3093.981396 C = 3261.569552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.165 3.835 3 H 0.058 0.942 4 C -0.539 4.539 5 H 0.079 0.921 6 C 0.072 3.928 7 N -0.896 5.896 8 Si 0.874 3.126 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.263 1.263 12 N -0.498 5.498 13 O -0.240 6.240 14 C 0.092 3.908 15 C -0.144 4.144 16 C -0.178 4.178 17 C -0.178 4.178 18 H 0.028 0.972 19 H 0.042 0.958 20 H 0.052 0.948 21 H 0.264 0.736 22 H 0.321 0.679 23 H 0.046 0.954 24 H 0.042 0.958 25 H 0.112 0.888 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.492 -3.252 11.298 11.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.057 3.943 3 H 0.076 0.924 4 C -0.578 4.578 5 H 0.097 0.903 6 C -0.131 4.131 7 N -0.533 5.533 8 Si 0.701 3.299 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.187 1.187 12 N -0.168 5.168 13 O -0.247 6.247 14 C 0.013 3.987 15 C -0.164 4.164 16 C -0.215 4.215 17 C -0.215 4.215 18 H 0.048 0.952 19 H 0.062 0.938 20 H 0.071 0.929 21 H 0.074 0.926 22 H 0.134 0.866 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.130 0.870 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.100 -3.075 11.343 11.939 hybrid contribution 0.820 0.613 -0.811 1.306 sum -1.280 -2.461 10.532 10.891 Atomic orbital electron populations 1.21756 0.97163 1.01049 0.98260 1.19929 0.93588 0.93193 0.87639 0.92417 1.21569 1.43556 0.96284 0.96380 0.90257 1.25104 0.94346 0.98350 0.95264 1.69929 1.45887 1.35869 1.01640 0.86908 0.79134 0.86348 0.77541 1.20044 1.21248 1.18718 1.67203 1.14662 0.93353 1.41570 1.90887 1.71407 1.20375 1.42015 1.21738 0.97117 0.89245 0.90594 1.22152 1.03534 0.94703 0.95970 1.23039 0.92894 1.03715 1.01865 1.22952 0.97952 0.98774 1.01798 0.95246 0.93846 0.92923 0.92604 0.86575 0.93608 0.93944 0.87013 0.88775 0.88941 0.88754 0.88888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.85 9.15 37.15 0.34 -2.51 15 2 C 0.16 4.03 2.81 -68.87 -0.19 3.84 15 3 H 0.06 1.39 5.29 -51.93 -0.27 1.11 15 4 C -0.54 -15.43 8.82 -34.44 -0.30 -15.73 15 5 H 0.08 2.55 7.71 -52.49 -0.40 2.15 15 6 C 0.07 2.08 5.47 -17.82 -0.10 1.99 15 7 N -0.90 -27.54 13.96 55.43 0.77 -26.77 15 8 Si 0.87 21.18 26.99 -169.99 -4.59 16.60 15 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 11 H -0.26 -6.08 6.82 56.52 0.39 -5.69 15 12 N -0.50 -10.95 7.11 -5.65 -0.04 -10.99 15 13 O -0.24 -5.30 9.88 -13.92 -0.14 -5.44 15 14 C 0.09 1.56 6.67 37.16 0.25 1.81 15 15 C -0.14 -2.16 6.05 -90.61 -0.55 -2.71 15 16 C -0.18 -2.20 10.18 -26.69 -0.27 -2.47 15 17 C -0.18 -2.07 10.26 -26.69 -0.27 -2.34 15 18 H 0.03 0.60 8.14 -51.93 -0.42 0.18 15 19 H 0.04 0.98 8.14 -51.93 -0.42 0.56 15 20 H 0.05 1.25 7.80 -51.93 -0.41 0.85 15 21 H 0.26 7.58 8.31 -40.82 -0.34 7.25 15 22 H 0.32 6.60 8.99 -39.29 -0.35 6.25 15 23 H 0.05 0.73 7.87 -51.93 -0.41 0.32 15 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 15 25 H 0.11 1.83 8.14 -51.93 -0.42 1.40 15 26 H 0.09 1.11 8.03 -51.93 -0.42 0.69 15 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 15 28 H 0.09 0.98 8.14 -51.93 -0.42 0.56 15 29 H 0.09 0.99 8.14 -51.93 -0.42 0.56 15 LS Contribution 249.39 15.07 3.76 3.76 Total: -1.00 -30.82 249.39 -5.71 -36.53 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.37 Total: 4.45 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -1.10 Total: -18.13 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.73 Total: -37.76 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.14 Total: -5.44 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.59 Total: 16.60 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.82 -5.71 -36.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307892926.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.892 kcal (2) G-P(sol) polarization free energy of solvation -30.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds