Wall clock time and date at job start Mon Mar 30 2020 02:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47591 * 2 1 4 4 C 1.50703 * 109.47480 * 239.99974 * 2 1 3 5 5 H 1.07997 * 119.99852 * 275.01185 * 4 2 1 6 6 C 1.37871 * 120.00042 * 95.00263 * 4 2 1 7 7 N 1.31521 * 119.99982 * 184.92285 * 6 4 2 8 8 Si 1.86794 * 120.00071 * 4.92367 * 6 4 2 9 9 H 1.48503 * 109.47496 * 84.83399 * 8 6 4 10 10 H 1.48502 * 109.47075 * 204.83216 * 8 6 4 11 11 H 1.48504 * 109.46993 * 324.83017 * 8 6 4 12 12 N 1.46902 * 109.47216 * 119.99993 * 2 1 3 13 13 O 1.46301 * 110.99985 * 59.99709 * 12 2 1 14 14 C 1.42895 * 114.00245 * 180.02562 * 13 12 2 15 15 C 1.52999 * 109.47273 * 179.97438 * 14 13 12 16 16 C 1.53002 * 117.49973 * 243.74674 * 15 14 13 17 17 C 1.53008 * 117.49714 * 175.08689 * 15 14 13 18 18 H 1.09001 * 109.47245 * 294.98103 * 1 2 3 19 19 H 1.09006 * 109.47044 * 54.97691 * 1 2 3 20 20 H 1.08996 * 109.47541 * 174.97401 * 1 2 3 21 21 H 0.96998 * 119.99833 * 180.02562 * 7 6 4 22 22 H 1.00902 * 111.00072 * 183.95029 * 12 2 1 23 23 H 1.09002 * 109.46905 * 59.99909 * 14 13 12 24 24 H 1.08995 * 109.47624 * 300.00513 * 14 13 12 25 25 H 1.09000 * 115.54665 * 29.42091 * 15 14 13 26 26 H 1.09002 * 117.49730 * 0.02562 * 16 15 14 27 27 H 1.08999 * 117.49481 * 145.02521 * 16 15 14 28 28 H 1.09001 * 117.49802 * 214.97969 * 17 15 14 29 29 H 1.09003 * 117.49798 * 0.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1353 -1.7855 -1.2290 6 6 2.3603 0.0121 -2.3580 7 7 2.7060 -0.6132 -3.4622 8 14 2.3139 1.8790 -2.3173 9 1 3.5995 2.3947 -1.7821 10 1 2.1061 2.3990 -3.6927 11 1 1.1989 2.3275 -1.4449 12 7 2.0196 -0.6925 1.1994 13 8 1.5505 -2.0778 1.2333 14 6 1.9904 -2.8127 2.3771 15 6 1.4428 -4.2397 2.3081 16 6 0.4682 -4.6762 3.4038 17 6 1.8976 -5.2239 3.3878 18 1 -0.3634 0.4340 0.9315 19 1 -0.3633 0.5898 -0.8416 20 1 -0.3634 -1.0236 -0.0900 21 1 2.9371 -0.1049 -4.2553 22 1 3.0262 -0.6501 1.2559 23 1 1.6262 -2.3276 3.2827 24 1 3.0798 -2.8416 2.3935 25 1 1.2809 -4.6330 1.3045 26 1 0.2168 -3.9466 4.1736 27 1 -0.3347 -5.3570 3.1211 28 1 2.0343 -6.2648 3.0946 29 1 2.5865 -4.8546 4.1475 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307892926.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:45 Heat of formation + Delta-G solvation = -3.758582 kcal Electronic energy + Delta-G solvation = -11290.055241 eV Core-core repulsion = 9214.935907 eV Total energy + Delta-G solvation = -2075.119334 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.83736 -37.48793 -35.56652 -33.65985 -29.43840 -27.37907 -26.98201 -23.24184 -21.89146 -21.42706 -19.26740 -18.00600 -16.97537 -16.39773 -15.86313 -15.61339 -14.81814 -14.48417 -14.23290 -13.97068 -13.08789 -12.83377 -12.64366 -12.47177 -12.38369 -12.08453 -11.80609 -11.69845 -11.38340 -11.26028 -10.78895 -10.61674 -9.39532 -8.33800 -6.41765 1.35185 1.36284 1.47994 2.02446 2.31697 2.90642 3.04085 3.84479 3.96125 4.06315 4.27033 4.41520 4.62151 4.63481 4.76342 4.79775 4.87760 4.95590 5.00820 5.14875 5.25919 5.26421 5.40426 5.62184 5.93541 6.23103 6.58333 6.67682 7.26301 8.83692 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.068093 B = 0.009048 C = 0.008583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.102702 B = 3093.981396 C = 3261.569552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.165 3.835 3 H 0.074 0.926 4 C -0.545 4.545 5 H 0.023 0.977 6 C 0.012 3.988 7 N -0.948 5.948 8 Si 0.948 3.052 9 H -0.259 1.259 10 H -0.286 1.286 11 H -0.238 1.238 12 N -0.489 5.489 13 O -0.271 6.271 14 C 0.089 3.911 15 C -0.180 4.180 16 C -0.168 4.168 17 C -0.153 4.153 18 H 0.057 0.943 19 H 0.045 0.955 20 H 0.032 0.968 21 H 0.267 0.733 22 H 0.327 0.673 23 H 0.060 0.940 24 H 0.046 0.954 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.798 -1.955 13.166 13.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.056 3.944 3 H 0.091 0.909 4 C -0.584 4.584 5 H 0.042 0.958 6 C -0.186 4.186 7 N -0.587 5.587 8 Si 0.770 3.230 9 H -0.184 1.184 10 H -0.212 1.212 11 H -0.161 1.161 12 N -0.157 5.157 13 O -0.279 6.279 14 C 0.012 3.988 15 C -0.199 4.199 16 C -0.205 4.205 17 C -0.190 4.190 18 H 0.076 0.924 19 H 0.064 0.936 20 H 0.051 0.949 21 H 0.076 0.924 22 H 0.141 0.859 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.105 0.895 26 H 0.122 0.878 27 H 0.120 0.880 28 H 0.127 0.873 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.406 -1.791 13.248 13.583 hybrid contribution 0.925 0.048 -1.354 1.640 sum -1.481 -1.744 11.894 12.112 Atomic orbital electron populations 1.21660 0.96003 1.00158 0.99837 1.19920 0.94534 0.93659 0.86328 0.90871 1.21694 1.44003 0.94016 0.98680 0.95824 1.26097 0.93611 1.04542 0.94374 1.70097 1.47490 1.38435 1.02708 0.85727 0.80563 0.78628 0.78058 1.18367 1.21176 1.16134 1.67068 1.15092 0.93975 1.39612 1.90870 1.72100 1.20313 1.44658 1.21971 0.97564 0.89872 0.89439 1.22076 1.07371 0.94394 0.96103 1.23155 0.93516 1.03670 1.00168 1.23085 0.97698 0.98566 0.99630 0.92422 0.93571 0.94918 0.92372 0.85911 0.92190 0.93554 0.89526 0.87834 0.87955 0.87287 0.87299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.27 9.15 71.98 0.66 -4.61 15 2 C 0.16 7.88 2.81 44.17 0.12 8.01 15 3 H 0.07 3.29 5.29 -2.39 -0.01 3.27 15 4 C -0.54 -31.89 8.82 25.60 0.23 -31.67 15 5 H 0.02 1.60 7.71 -2.91 -0.02 1.58 15 6 C 0.01 0.69 5.47 84.65 0.46 1.15 15 7 N -0.95 -59.84 13.96 21.45 0.30 -59.54 15 8 Si 0.95 42.82 26.99 68.60 1.85 44.67 15 9 H -0.26 -11.03 7.11 99.48 0.71 -10.32 15 10 H -0.29 -12.83 7.11 99.48 0.71 -12.12 15 11 H -0.24 -9.77 6.82 99.48 0.68 -9.09 15 12 N -0.49 -21.13 7.11 -171.80 -1.22 -22.35 15 13 O -0.27 -12.16 9.88 -50.16 -0.50 -12.66 15 14 C 0.09 3.01 6.67 71.98 0.48 3.49 15 15 C -0.18 -5.33 6.05 -10.79 -0.07 -5.39 15 16 C -0.17 -3.82 10.18 30.62 0.31 -3.51 15 17 C -0.15 -3.22 10.26 30.62 0.31 -2.90 15 18 H 0.06 2.22 8.14 -2.39 -0.02 2.20 15 19 H 0.05 1.99 8.14 -2.38 -0.02 1.97 15 20 H 0.03 1.54 7.80 -2.39 -0.02 1.52 15 21 H 0.27 15.67 8.31 -92.71 -0.77 14.90 15 22 H 0.33 13.26 8.99 -89.69 -0.81 12.46 15 23 H 0.06 1.83 7.87 -2.39 -0.02 1.81 15 24 H 0.05 1.49 8.14 -2.39 -0.02 1.47 15 25 H 0.09 2.97 8.14 -2.39 -0.02 2.95 15 26 H 0.10 2.16 8.03 -2.39 -0.02 2.14 15 27 H 0.10 2.11 8.14 -2.39 -0.02 2.09 15 28 H 0.11 1.99 8.14 -2.39 -0.02 1.97 15 29 H 0.11 1.97 8.14 -2.39 -0.02 1.95 15 Total: -1.00 -67.80 249.39 3.23 -64.57 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.29 Total: 20.73 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 2.51 Total: -35.43 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -0.92 Total: -81.89 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.50 Total: -12.66 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.85 Total: 44.67 kcal Total: -67.80 3.23 -64.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307892926.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.811 kcal (2) G-P(sol) polarization free energy of solvation -67.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds