Wall clock time and date at job start Mon Mar 30 2020 02:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.33391 * 2 1 4 4 C 1.54479 * 110.46780 * 237.68887 * 2 1 3 5 5 C 1.54507 * 104.06223 * 217.13993 * 4 2 1 6 6 H 1.09009 * 110.62293 * 118.70357 * 5 4 2 7 7 N 1.46495 * 110.51384 * 241.35184 * 5 4 2 8 8 C 1.46505 * 119.99883 * 56.09958 * 7 5 4 9 9 C 1.36933 * 120.00354 * 236.09896 * 7 5 4 10 10 H 1.08001 * 120.00311 * 340.08894 * 9 7 5 11 11 C 1.38818 * 120.00207 * 160.08928 * 9 7 5 12 12 N 1.31617 * 119.99751 * 344.20004 * 11 9 7 13 13 Si 1.86795 * 120.00121 * 164.20192 * 11 9 7 14 14 H 1.48499 * 109.47189 * 265.42288 * 13 11 9 15 15 H 1.48503 * 109.47342 * 25.41999 * 13 11 9 16 16 H 1.48500 * 109.47295 * 145.41905 * 13 11 9 17 17 C 1.54478 * 104.06480 * 0.02562 * 5 4 2 18 18 O 1.44420 * 110.37563 * 122.25033 * 2 1 3 19 19 H 1.08999 * 109.47031 * 299.20452 * 1 2 3 20 20 H 1.09003 * 109.47027 * 59.20014 * 1 2 3 21 21 H 1.08998 * 109.46801 * 179.19849 * 1 2 3 22 22 H 1.08997 * 110.50880 * 98.49635 * 4 2 1 23 23 H 1.09004 * 110.51185 * 335.78865 * 4 2 1 24 24 H 1.09007 * 109.47066 * 265.39199 * 8 7 5 25 25 H 1.09002 * 109.46903 * 25.38796 * 8 7 5 26 26 H 1.08998 * 109.47233 * 145.39030 * 8 7 5 27 27 H 0.97002 * 119.99496 * 179.97438 * 12 11 9 28 28 H 1.08996 * 110.37286 * 142.81060 * 17 5 4 29 29 H 1.08998 * 110.37200 * 265.14640 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0702 -0.7736 -1.2232 5 6 3.3208 -1.5031 -0.6836 6 1 3.2027 -2.5832 -0.7708 7 7 4.5212 -1.0601 -1.3971 8 6 4.8666 0.3631 -1.4364 9 6 5.3204 -1.9762 -2.0271 10 1 5.2710 -3.0184 -1.7482 11 6 6.1943 -1.5655 -3.0245 12 7 6.0469 -0.3825 -3.5823 13 14 7.5793 -2.6916 -3.5748 14 1 8.8182 -2.3535 -2.8292 15 1 7.2074 -4.1033 -3.3024 16 1 7.8133 -2.5135 -5.0304 17 6 3.3879 -1.0845 0.8018 18 8 2.0328 -0.7224 1.1450 19 1 -0.3633 0.5014 0.8970 20 1 -0.3633 0.5262 -0.8828 21 1 -0.3633 -1.0276 -0.0144 22 1 2.3450 -0.0833 -2.0207 23 1 1.3314 -1.4928 -1.5770 24 1 4.4691 0.8084 -2.3486 25 1 4.4367 0.8654 -0.5698 26 1 5.9507 0.4745 -1.4202 27 1 6.6578 -0.0953 -4.2789 28 1 3.7255 -1.9190 1.4163 29 1 4.0514 -0.2286 0.9252 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401663767.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:18 Heat of formation + Delta-G solvation = -26.292957 kcal Electronic energy + Delta-G solvation = -11856.158129 eV Core-core repulsion = 9780.061631 eV Total energy + Delta-G solvation = -2076.096498 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.99586 -35.16076 -31.76590 -31.43428 -28.64358 -26.04522 -25.38802 -22.96960 -20.81041 -19.32382 -16.94108 -15.81777 -15.07287 -14.88616 -14.48205 -13.57517 -13.01311 -12.57070 -12.31873 -12.10101 -11.66925 -11.52878 -10.93312 -10.89602 -10.65084 -10.47935 -10.24201 -10.12210 -9.84772 -9.80500 -9.17405 -8.54980 -6.80889 -5.75137 -3.18506 3.37870 3.44451 3.45922 4.37806 4.53366 5.24432 5.30738 5.44808 5.49392 5.62091 5.78361 5.82280 5.99013 6.09566 6.16352 6.35779 6.40123 6.51273 6.68972 6.78336 6.90276 7.31027 7.43103 7.69638 7.79242 8.35977 9.20633 9.84382 10.32565 11.30233 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.078151 B = 0.010690 C = 0.010336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.196406 B = 2618.760444 C = 2708.242509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.070 3.930 3 H 0.060 0.940 4 C -0.168 4.168 5 C 0.149 3.851 6 H 0.074 0.926 7 N -0.591 5.591 8 C 0.161 3.839 9 C -0.258 4.258 10 H 0.071 0.929 11 C 0.001 3.999 12 N -0.907 5.907 13 Si 0.906 3.094 14 H -0.288 1.288 15 H -0.279 1.279 16 H -0.291 1.291 17 C 0.026 3.974 18 O -0.386 6.386 19 H 0.055 0.945 20 H 0.065 0.935 21 H 0.060 0.940 22 H 0.081 0.919 23 H 0.064 0.936 24 H 0.029 0.971 25 H 0.000 1.000 26 H 0.045 0.955 27 H 0.253 0.747 28 H 0.082 0.918 29 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.594 0.631 5.168 8.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.012 3.988 3 H 0.078 0.922 4 C -0.208 4.208 5 C 0.040 3.960 6 H 0.093 0.907 7 N -0.313 5.313 8 C 0.017 3.983 9 C -0.387 4.387 10 H 0.089 0.911 11 C -0.197 4.197 12 N -0.552 5.552 13 Si 0.736 3.264 14 H -0.215 1.215 15 H -0.204 1.204 16 H -0.218 1.218 17 C -0.053 4.053 18 O -0.305 6.305 19 H 0.074 0.926 20 H 0.084 0.916 21 H 0.079 0.921 22 H 0.099 0.901 23 H 0.082 0.918 24 H 0.048 0.952 25 H 0.018 0.982 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.590 0.664 5.218 8.432 hybrid contribution 0.930 -0.437 -0.629 1.204 sum -5.660 0.228 4.589 7.290 Atomic orbital electron populations 1.21777 0.94185 1.02355 1.01627 1.22901 0.94244 0.95444 0.86229 0.92190 1.23520 0.99037 1.00263 0.97954 1.21666 0.86540 0.97811 0.90014 0.90745 1.43994 1.23240 1.03985 1.60081 1.20771 0.98981 0.83072 0.95505 1.19291 1.15323 0.90615 1.13497 0.91136 1.24960 1.00857 0.97254 0.96645 1.70102 1.37827 1.20218 1.27064 0.86211 0.82531 0.80101 0.77551 1.21517 1.20426 1.21799 1.24075 0.83200 0.99811 0.98201 1.89004 1.28062 1.74903 1.38511 0.92582 0.91588 0.92131 0.90072 0.91765 0.95241 0.98199 0.93668 0.93734 0.89979 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.53 37.16 0.35 -1.58 15 2 C 0.07 1.18 3.92 -25.95 -0.10 1.08 15 3 H 0.06 1.01 8.14 -51.92 -0.42 0.59 15 4 C -0.17 -3.18 6.10 -25.16 -0.15 -3.33 15 5 C 0.15 3.17 3.61 -66.37 -0.24 2.94 15 6 H 0.07 1.58 7.91 -51.92 -0.41 1.17 15 7 N -0.59 -14.92 2.88 -171.68 -0.49 -15.41 15 8 C 0.16 3.98 7.74 59.85 0.46 4.45 15 9 C -0.26 -7.12 9.63 -15.06 -0.14 -7.26 15 10 H 0.07 1.90 7.84 -52.49 -0.41 1.49 15 11 C 0.00 0.03 5.04 -17.43 -0.09 -0.06 15 12 N -0.91 -26.47 10.69 55.49 0.59 -25.88 15 13 Si 0.91 21.86 29.58 -169.99 -5.03 16.84 15 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 15 H -0.28 -6.57 7.11 56.52 0.40 -6.16 15 16 H -0.29 -7.10 7.11 56.52 0.40 -6.69 15 17 C 0.03 0.49 7.14 37.93 0.27 0.77 15 18 O -0.39 -7.20 11.34 -35.23 -0.40 -7.60 15 19 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 20 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.06 0.81 8.13 -51.93 -0.42 0.38 15 22 H 0.08 1.69 7.27 -51.93 -0.38 1.31 15 23 H 0.06 1.13 7.87 -51.93 -0.41 0.72 15 24 H 0.03 0.78 7.33 -51.92 -0.38 0.40 15 25 H 0.00 -0.01 6.47 -51.93 -0.34 -0.35 15 26 H 0.04 1.20 7.17 -51.93 -0.37 0.83 15 27 H 0.25 7.13 8.31 -40.82 -0.34 6.79 15 28 H 0.08 1.46 8.14 -51.93 -0.42 1.04 15 29 H 0.06 1.18 6.34 -51.93 -0.33 0.85 15 LS Contribution 235.71 15.07 3.55 3.55 Total: -1.00 -29.35 235.71 -5.69 -35.04 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -4.27 Total: -3.53 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 0.36 Total: -3.01 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.10 Total: -41.29 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.40 Total: -7.60 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.35 -5.69 -35.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401663767.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.749 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds